MD08G1151000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000260
Physical Location & Seq
Reverse (-)
15387654 .. 15390336
2683 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1151000.v1.1.491

Sequence Viewer

Length: 189 bp
ATGATGGCCCAGAGCGAGCAGAGGAGGGCGCAGCTGAGGGCCCAGGGCGAAGAGATGAGGAACTATGCCGGGACGGTGCGAGACCTTGTACAAGCCATACAGATGTCCAGCCTCCAAATCTCGCTACCACCACCTCATCTTGCTCCACCTTCGACCTCAGCGCCACCTTGCCTTGCCGATACCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

63

Amino Acids

6.78

Weight (kDa)

6.53

Isoelectric Point (pI)

81.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 90
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 75
AoxI GGCC 2 cut(s) 6, 39
ApaI GGGCCC 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 31
AspLEI GCGC 2 cut(s) 31, 163
AspS9I GGNCC 3 cut(s) 7, 39, 40
AsuC2I CCSGG 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 43
BanII GRGCYC 1 cut(s) 43
BbvCI CCTCAGC 2 cut(s) 35, 157
BbvI GCAGC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 44
BcnI CCSGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 75
BfoI RGCGCY 1 cut(s) 164
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
Bme1390I CCNGG 2 cut(s) 44, 70
BmgT120I GGNCC 3 cut(s) 7, 39, 40
BmiI GGNNCC 1 cut(s) 41
BmrFI CCNGG 2 cut(s) 44, 70
BmrI ACTGGG 1 cut(s) 178
BmuI ACTGGG 1 cut(s) 178
Bpu10I CCTNAGC 2 cut(s) 35, 157
BpuMI CCSGG 1 cut(s) 70
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 42, 43
Bse1I ACTGG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 42, 43
BseMII CTCAG 2 cut(s) 26, 171
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 37
BseSI GKGCMC 1 cut(s) 43
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 2 cut(s) 8, 41
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 2 cut(s) 8, 41
Bso31I GGTCTC 1 cut(s) 75
Bsp120I GGGCCC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 88
BspANI GGCC 2 cut(s) 8, 41
BspCNI CTCAG 2 cut(s) 27, 170
BspLI GGNNCC 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 75
BsrGI TGTACA 1 cut(s) 88
BsrI ACTGG 1 cut(s) 184
BssECI CCNNGG 2 cut(s) 42, 43
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 45
BstAUI TGTACA 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 35, 157
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 2 cut(s) 31, 163
BstMAI GTCTC 1 cut(s) 75
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 2 cut(s) 42, 68
BstSLI GKGCMC 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 43
BsuRI GGCC 2 cut(s) 8, 41
Cac8I GCNNGC 1 cut(s) 17
CfoI GCGC 2 cut(s) 31, 163
Cfr13I GGNCC 3 cut(s) 7, 39, 40
Csp6I GTAC 1 cut(s) 89
CviJI RGCY 5 cut(s) 8, 34, 41, 95, 111
CviKI_1 RGCY 5 cut(s) 8, 34, 41, 95, 111
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 2 cut(s) 35, 157
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 75
EcoO109I RGGNCCY 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 43
FaiI YATR 2 cut(s) 66, 98
FaqI GGGAC 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 32
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 32
GlaI GCGC 2 cut(s) 30, 162
GluI GCNGC 1 cut(s) 32
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 2 cut(s) 8, 41
HapII CCGG 1 cut(s) 69
HhaI GCGC 2 cut(s) 31, 163
Hin6I GCGC 2 cut(s) 29, 161
HinP1I GCGC 2 cut(s) 29, 161
HpaII CCGG 1 cut(s) 69
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 76
HpyF3I CTNAG 2 cut(s) 35, 157
HspAI GCGC 2 cut(s) 29, 161
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 5 cut(s) 23, 29, 56, 82, 121
Lsp1109I GCAGC 1 cut(s) 43
MboII GAAGA 1 cut(s) 62
MhlI GDGCHC 1 cut(s) 43
MnlI CCTC 7 cut(s) 15, 18, 30, 51, 122, 144, 166
MslI CAYNNNNRTG 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 2 cut(s) 44, 70
MvaI CCWGG 1 cut(s) 44
NciI CCSGG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 41
PasI CCCWGGG 1 cut(s) 43
PkrI GCNGC 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 41
PspOMI GGGCCC 1 cut(s) 39
PspPI GGNCC 3 cut(s) 7, 39, 40
PvuII CAGCTG 1 cut(s) 34
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 101
SatI GCNGC 1 cut(s) 32
Sau96I GGNCC 3 cut(s) 7, 39, 40
ScrFI CCNGG 2 cut(s) 44, 70
SduI GDGCHC 1 cut(s) 43
SetI ASST 6 cut(s) 36, 87, 136, 151, 158, 169
SmiMI CAYNNNNRTG 1 cut(s) 101
StyD4I CCNGG 2 cut(s) 42, 68
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 1 cut(s) 152
TatI WGTACW 1 cut(s) 88
TseI GCWGC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.