MD04G1142700.v1.1

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000260
Physical Location & Seq
Reverse (-)
23243583 .. 23247440
3858 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1142700.v1.1.491

Sequence Viewer

Length: 618 bp
ATGTTGAAGGAGCTACAACTTGTACGTATGTCTGCCTCCTTGATCAAGATTGCGTATGATGAGCGACATCGTGGAGCGGTTACCTCACAGCAGCATAACAGCGTCGTTAATTGCTGTGGTTTTATTATTAGGAATTTTTGTCCTATGCGGTGGGAGAGTTGGGCAAAAATTCCCGAGGAGACGAGGACCCTGGTGCGAGACAATTTGGAGGTCGTTTTTGAAATGGAGGACATATCCCCTGAGGTCAGTGCCTACTTAGAGGAGACCTTAGCAAGCCGGTACAAAGATTGGAAGAGCGCTCTTCACAAGCATTTTCAGCTATGGGAATCTCCGGAGATTGCTCGCCTACAGGGTTGCCCACTCGAGTATAAGGAACGGCGAGAGGATTGGGAGTGGCTCTGCACACATTTTACGGATCCAAAATTTTTGAAGAAATCTGCTACTGGCAAGAAAGCTCGGGACTCAAAGACACTTCTCCACCATTCCGGTTCGAAGCCCTTTTCGTATAGGGTTGAGGCACGACGTGAGGAGGGTTCTAAGTTCCCACAGATTGACCTGTTCAAGCATGTTTACGTTCATCCCAACAATGAGAAAAGTGACCAGCTTTATGTAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

206

Amino Acids

24.3

Weight (kDa)

8.53

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 128 - 197 2.2e-08 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 77
AccIII TCCGGA 1 cut(s) 331
AciI CCGC 2 cut(s) 77, 148
AclWI GGATC 2 cut(s) 410, 423
AcsI RAATTY 3 cut(s) 133, 168, 422
AdeI CACNNNGTG 1 cut(s) 524
AfaI GTAC 2 cut(s) 24, 281
AfeI AGCGCT 1 cut(s) 298
AgsI TTSAA 4 cut(s) 7, 221, 430, 562
AjiI CACGTC 1 cut(s) 524
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 4 cut(s) 13, 319, 455, 604
AluI AGCT 4 cut(s) 13, 319, 455, 604
Alw26I GTCTC 3 cut(s) 173, 192, 257
AlwI GGATC 2 cut(s) 410, 423
Ama87I CYCGRG 3 cut(s) 173, 362, 456
Aor13HI TCCGGA 1 cut(s) 331
Aor51HI AGCGCT 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 91
ApoI RAATTY 3 cut(s) 133, 168, 422
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 186
AsuII TTCGAA 1 cut(s) 491
AvaI CYCGRG 3 cut(s) 173, 362, 456
AvaII GGWCC 1 cut(s) 186
AxyI CCTNAGG 1 cut(s) 240
BamHI GGATCC 1 cut(s) 415
BbvI GCAGC 1 cut(s) 103
BceAI ACGGC 1 cut(s) 392
BciT130I CCWGG 1 cut(s) 191
BclI TGATCA 1 cut(s) 42
BcoDI GTCTC 3 cut(s) 173, 192, 257
BfmI CTRYAG 1 cut(s) 347
BfoI RGCGCY 1 cut(s) 300
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 186
BmeT110I CYCGRG 3 cut(s) 173, 362, 456
BmgBI CACGTC 1 cut(s) 524
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 2 cut(s) 188, 417
BmrFI CCNGG 1 cut(s) 191
Bpu10I CCTNAGC 1 cut(s) 268
Bpu14I TTCGAA 1 cut(s) 491
BsaAI YACGTR 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 174, 189
BsaWI WCCGGW 2 cut(s) 331, 485
Bse118I RCCGGY 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 448
Bse21I CCTNAGG 1 cut(s) 240
BseAI TCCGGA 1 cut(s) 331
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 2 cut(s) 174, 189
BseGI GGATG 1 cut(s) 577
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 448
BseRI GAGGAG 3 cut(s) 191, 275, 542
BseXI GCAGC 1 cut(s) 103
BsgI GTGCAG 1 cut(s) 385
BsiHKCI CYCGRG 3 cut(s) 173, 362, 456
BsiSI CCGG 3 cut(s) 277, 332, 486
BslFI GGGAC 1 cut(s) 473
BsmAI GTCTC 3 cut(s) 173, 192, 257
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 473
Bso31I GGTCTC 1 cut(s) 257
BsoBI CYCGRG 3 cut(s) 173, 362, 456
Bsp119I TTCGAA 1 cut(s) 491
Bsp13I TCCGGA 1 cut(s) 331
Bsp143I GATC 2 cut(s) 42, 415
BspACI CCGC 2 cut(s) 77, 148
BspCNI CTCAG 1 cut(s) 232
BspEI TCCGGA 1 cut(s) 331
BspLI GGNNCC 2 cut(s) 188, 417
BspPI GGATC 2 cut(s) 410, 423
BspQI GCTCTTC 2 cut(s) 287, 306
BspT104I TTCGAA 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 257
BsrBI CCGCTC 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 276
BsrI ACTGG 1 cut(s) 448
BssAI RCCGGY 1 cut(s) 276
BssECI CCNNGG 2 cut(s) 174, 189
BssMI GATC 2 cut(s) 42, 415
Bst2UI CCWGG 1 cut(s) 191
Bst6I CTCTTC 2 cut(s) 287, 306
BstBAI YACGTR 1 cut(s) 26
BstBI TTCGAA 1 cut(s) 491
BstC8I GCNNGC 2 cut(s) 274, 343
BstDEI CTNAG 4 cut(s) 240, 256, 268, 537
BstEII GGTNACC 1 cut(s) 79
BstF5I GGATG 1 cut(s) 577
BstH2I RGCGCY 1 cut(s) 300
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 2 cut(s) 45, 418
BstMAI GTCTC 3 cut(s) 173, 192, 257
BstMBI GATC 2 cut(s) 42, 415
BstMWI GCNNNNNNNGC 1 cut(s) 316
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 569
BstPI GGTNACC 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 1 cut(s) 347
BstSNI TACGTA 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
Bsu36I CCTNAGG 1 cut(s) 240
BtrI CACGTC 1 cut(s) 524
BtsCI GGATG 1 cut(s) 577
BtsIMutI CAGTG 1 cut(s) 253
Cac8I GCNNGC 2 cut(s) 274, 343
CfoI GCGC 1 cut(s) 299
Cfr10I RCCGGY 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 186
CseI GACGC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 23, 280
CviAII CATG 1 cut(s) 566
CviJI RGCY 7 cut(s) 13, 276, 319, 397, 455, 496, 604
CviKI_1 RGCY 7 cut(s) 13, 276, 319, 397, 455, 496, 604
CviQI GTAC 2 cut(s) 23, 280
DdeI CTNAG 4 cut(s) 240, 256, 268, 537
DpnI GATC 2 cut(s) 44, 417
DpnII GATC 2 cut(s) 42, 415
DraIII CACNNNGTG 1 cut(s) 524
Eam1104I CTCTTC 2 cut(s) 287, 306
EarI CTCTTC 2 cut(s) 287, 306
Eco105I TACGTA 1 cut(s) 26
Eco31I GGTCTC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 186
Eco47III AGCGCT 1 cut(s) 298
Eco81I CCTNAGG 1 cut(s) 240
Eco88I CYCGRG 3 cut(s) 173, 362, 456
Eco91I GGTNACC 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 186
EcoO65I GGTNACC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 189
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 1 cut(s) 569
FaqI GGGAC 1 cut(s) 473
FatI CATG 1 cut(s) 565
FbaI TGATCA 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 92
FokI GGATG 1 cut(s) 564
Fsp4HI GCNGC 1 cut(s) 92
GlaI GCGC 1 cut(s) 298
GluI GCNGC 1 cut(s) 92
HaeII RGCGCY 1 cut(s) 300
HapII CCGG 3 cut(s) 277, 332, 486
HgaI GACGC 1 cut(s) 91
HhaI GCGC 1 cut(s) 299
Hin1II CATG 1 cut(s) 569
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HinfI GANTC 2 cut(s) 326, 461
HpaII CCGG 3 cut(s) 277, 332, 486
Hpy166II GTNNAC 1 cut(s) 571
Hpy188III TCNNGA 4 cut(s) 46, 173, 332, 458
Hpy8I GTNNAC 1 cut(s) 571
Hpy99I CGWCG 2 cut(s) 107, 525
HpyCH4IV ACGT 3 cut(s) 25, 523, 573
HpyCH4V TGCA 1 cut(s) 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 316
HpyF3I CTNAG 4 cut(s) 240, 256, 268, 537
HpySE526I ACGT 3 cut(s) 25, 523, 573
Hsp92II CATG 1 cut(s) 569
HspAI GCGC 1 cut(s) 297
Kpn2I TCCGGA 1 cut(s) 331
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 2 cut(s) 42, 415
LguI GCTCTTC 2 cut(s) 287, 306
LmnI GCTCC 2 cut(s) 10, 74
Lsp1109I GCAGC 1 cut(s) 103
MaeII ACGT 3 cut(s) 25, 523, 573
MaeIII GTNAC 2 cut(s) 79, 596
MalI GATC 2 cut(s) 44, 417
MbiI CCGCTC 1 cut(s) 77
MboI GATC 2 cut(s) 42, 415
MboII GAAGA 3 cut(s) 293, 304, 442
MflI RGATCY 1 cut(s) 415
MluCI AATT 5 cut(s) 109, 133, 168, 202, 422
MlyI GAGTC 1 cut(s) 455
MroI TCCGGA 1 cut(s) 331
MseI TTAA 1 cut(s) 108
MspI CCGG 3 cut(s) 277, 332, 486
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 316
NdeII GATC 2 cut(s) 42, 415
NlaIII CATG 1 cut(s) 569
NlaIV GGNNCC 2 cut(s) 188, 417
NmuCI GTSAC 1 cut(s) 596
NspI RCATGY 1 cut(s) 569
NspV TTCGAA 1 cut(s) 491
PaeR7I CTCGAG 1 cut(s) 362
PciSI GCTCTTC 2 cut(s) 287, 306
PfeI GAWTC 1 cut(s) 326
PkrI GCNGC 1 cut(s) 93
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
Ppu21I YACGTR 1 cut(s) 26
PpuMI RGGWCCY 1 cut(s) 186
Psp5II RGGWCCY 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 189
PspEI GGTNACC 1 cut(s) 79
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 2 cut(s) 188, 417
PspPI GGNCC 1 cut(s) 186
PspPPI RGGWCCY 1 cut(s) 186
PspXI VCTCGAGB 1 cut(s) 362
PsuI RGATCY 1 cut(s) 415
RsaI GTAC 2 cut(s) 24, 281
RsaNI GTAC 2 cut(s) 23, 280
SapI GCTCTTC 2 cut(s) 287, 306
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 92
Sau3AI GATC 2 cut(s) 42, 415
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 1 cut(s) 191
SfcI CTRYAG 1 cut(s) 347
Sfr274I CTCGAG 1 cut(s) 362
SfuI TTCGAA 1 cut(s) 491
SinI GGWCC 1 cut(s) 186
SlaI CTCGAG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SnaBI TACGTA 1 cut(s) 26
Sse9I AATT 5 cut(s) 109, 133, 168, 202, 422
SsiI CCGC 2 cut(s) 77, 148
StyD4I CCNGG 1 cut(s) 189
TaiI ACGT 3 cut(s) 28, 526, 576
TaqI TCGA 2 cut(s) 363, 491
TasI AATT 5 cut(s) 109, 133, 168, 202, 422
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 1 cut(s) 596
TseI GCWGC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 596
TspDTI ATGAA 1 cut(s) 566
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 3 cut(s) 133, 168, 422
XceI RCATGY 1 cut(s) 569
XhoI CTCGAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.