pycom12g09950

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000260
Physical Location & Seq
Forward (+)
11834876 .. 11835467
592 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g09950.2

Sequence Viewer

Length: 294 bp
ATGACTATCAGTGGCTCTACGACCATTTTCAAGACGAAAAATACCTCTCAACAGAAAAAGGTGAAGGCAAACTCGATCAATCGGTTGAAGAAGAAACCTCTTCATTGCTTCGGCTTACGACGCTTCTCTTATAGGTTGGAGGAGCGATGTAAGGGGGGTTCAAAGTTTCCTGAGATTGACATGTTCAATGAGGTGTACGTTCGGCCTAGGGATGAGCTGACAGAGCAGCTTCATTCCACCATGGTGGAGAAGGCCACACCATTTCGAATGAGGTGGCTTCCCAGCTTCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

98

Amino Acids

11.46

Weight (kDa)

10.2

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 197
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 4 cut(s) 31, 88, 162, 187
AleI CACNNNNGTG 1 cut(s) 242
AluBI AGCT 3 cut(s) 217, 229, 285
AluI AGCT 3 cut(s) 217, 229, 285
AoxI GGCC 2 cut(s) 203, 252
ApeKI GCWGC 1 cut(s) 226
AspA2I CCTAGG 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 73
AsuII TTCGAA 1 cut(s) 265
AvrII CCTAGG 1 cut(s) 206
BbvI GCAGC 1 cut(s) 238
BfaI CTAG 2 cut(s) 207, 292
BisI GCNGC 1 cut(s) 227
BlnI CCTAGG 1 cut(s) 206
BlsI GCNGC 1 cut(s) 228
Bpu14I TTCGAA 1 cut(s) 265
BsaJI CCNNGG 2 cut(s) 206, 240
Bse3DI GCAATG 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 206, 240
BseGI GGATG 1 cut(s) 217
BseMI GCAATG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 238
BseYI CCCAGC 1 cut(s) 281
BshFI GGCC 2 cut(s) 205, 254
BsnI GGCC 2 cut(s) 205, 254
Bsp119I TTCGAA 1 cut(s) 265
Bsp143I GATC 1 cut(s) 75
Bsp19I CCATGG 1 cut(s) 240
BspANI GGCC 2 cut(s) 205, 254
BspCNI CTCAG 1 cut(s) 163
BspT104I TTCGAA 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 103
BssECI CCNNGG 2 cut(s) 206, 240
BssMI GATC 1 cut(s) 75
BssT1I CCWWGG 2 cut(s) 206, 240
Bst6I CTCTTC 1 cut(s) 105
BstBI TTCGAA 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 1 cut(s) 78
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 2 cut(s) 120, 223
BstNSI RCATGY 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 238
BstXI CCANNNNNNTGG 1 cut(s) 244
BsuRI GGCC 2 cut(s) 205, 254
BtgI CCRYGG 1 cut(s) 240
BtgZI GCGATG 1 cut(s) 160
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 16
CseI GACGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 196
CviAII CATG 2 cut(s) 181, 241
CviJI RGCY 8 cut(s) 15, 114, 205, 217, 229, 254, 277, 285
CviKI_1 RGCY 8 cut(s) 15, 114, 205, 217, 229, 254, 277, 285
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 1 cut(s) 171
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 2 cut(s) 206, 240
EcoT14I CCWWGG 2 cut(s) 206, 240
ErhI CCWWGG 2 cut(s) 206, 240
FaeI CATG 2 cut(s) 184, 244
FaiI YATR 3 cut(s) 132, 182, 242
FatI CATG 2 cut(s) 180, 240
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 2 cut(s) 207, 292
GluI GCNGC 1 cut(s) 227
GsaI CCCAGC 1 cut(s) 285
HaeIII GGCC 2 cut(s) 205, 254
HgaI GACGC 1 cut(s) 129
Hin1II CATG 2 cut(s) 184, 244
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 31, 170
Hpy8I GTNNAC 1 cut(s) 196
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 2 cut(s) 58, 244
HpyCH4IV ACGT 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 223
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 2 cut(s) 184, 244
Kzo9I GATC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 1 cut(s) 183
Lsp1109I GCAGC 1 cut(s) 238
MaeI CTAG 2 cut(s) 207, 292
MaeII ACGT 1 cut(s) 198
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 3 cut(s) 92, 100, 103
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 5 cut(s) 55, 108, 133, 184, 264
MslI CAYNNNNRTG 1 cut(s) 242
MwoI GCNNNNNNNGC 2 cut(s) 120, 223
NcoI CCATGG 1 cut(s) 240
NdeII GATC 1 cut(s) 75
NlaIII CATG 2 cut(s) 184, 244
NspI RCATGY 1 cut(s) 184
NspV TTCGAA 1 cut(s) 265
OliI CACNNNNGTG 1 cut(s) 242
PciI ACATGT 1 cut(s) 180
PkrI GCNGC 1 cut(s) 228
PscI ACATGT 1 cut(s) 180
PspFI CCCAGC 1 cut(s) 281
PsrI GAACNNNNNNTAC 2 cut(s) 142, 174
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 242
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 1 cut(s) 75
SfuI TTCGAA 1 cut(s) 265
SgeI CNNG 6 cut(s) 43, 85, 182, 193, 219, 253
SmiMI CAYNNNNRTG 1 cut(s) 242
SspMI CTAG 2 cut(s) 207, 292
StyI CCWWGG 2 cut(s) 206, 240
TaiI ACGT 1 cut(s) 201
TaqI TCGA 2 cut(s) 74, 265
TscAI CASTG 1 cut(s) 16
TseI GCWGC 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 92, 221
TspRI CASTG 1 cut(s) 16
XceI RCATGY 1 cut(s) 184
XmaJI CCTAGG 1 cut(s) 206
XspI CTAG 2 cut(s) 207, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.