pycom12g02240

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000260
Physical Location & Seq
Forward (+)
1951100 .. 1951881
782 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g02240.2

Sequence Viewer

Length: 435 bp
ATGTCATCAGTGTCGGTTCAATCGCTTAGTGCACGGTGGCCTCACCGGCGCCGTCATGAGCCTGAGCCTTCTAATCACACTTCCTTGGCATCCAGAGTCGAGGGTGAGGCCTCCCAGCCAGCTAAAAAAAACACTAGGGGGCTTAGTCGAATGCTGAAGCAGGCACAAGGCGTACGTCAGGCCACCTCCAAGGTCAAGATTGCATATGACCCGCGACATTGTGGAGCGGCTACCTCACAACAGCATAGCAGTGTCGTTAGTAGCTGTGGTGTTGTTATTCGACAAAATTGTCATTTTCAGTGGGACTCTTGGGCAGAAATTCTCGAGGAGATGAAGAAACTGGTGCGACACAAGTTGTCGGTCATTTATGATCTTGAGGATATATTCCCCGAGGCCATGGCCTACTTAGAGGTGGCCTTAGCAACCCGGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

145

Amino Acids

16.29

Weight (kDa)

9.47

Isoelectric Point (pI)

66.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 288
AccB1I GGYRCC 1 cut(s) 48
AccBSI CCGCTC 1 cut(s) 227
AccII CGCG 1 cut(s) 214
AciI CCGC 2 cut(s) 212, 227
AcsI RAATTY 1 cut(s) 318
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 49
AfaI GTAC 2 cut(s) 174, 431
AgsI TTSAA 1 cut(s) 20
AluBI AGCT 2 cut(s) 122, 264
AluI AGCT 2 cut(s) 122, 264
Alw21I GWGCWC 1 cut(s) 34
Alw44I GTGCAC 1 cut(s) 30
Ama87I CYCGRG 2 cut(s) 323, 389
AoxI GGCC 6 cut(s) 38, 108, 180, 393, 399, 414
ApaLI GTGCAC 1 cut(s) 30
ApoI RAATTY 1 cut(s) 318
AspLEI GCGC 1 cut(s) 51
AsuC2I CCSGG 1 cut(s) 427
AsuHPI GGTGA 2 cut(s) 35, 116
AvaI CYCGRG 2 cut(s) 323, 389
BaeGI GKGCMC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 34
BceAI ACGGC 1 cut(s) 36
BcnI CCSGG 1 cut(s) 427
BfaI CTAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 52
BglI GCCNNNNNGGC 1 cut(s) 46
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 427
BmeT110I CYCGRG 2 cut(s) 323, 389
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 427
BmsI GCATC 1 cut(s) 98
Bpu10I CCTNAGC 2 cut(s) 63, 418
BpuEI CTTGAG 1 cut(s) 395
BpuMI CCSGG 1 cut(s) 427
BsaHI GRCGYC 1 cut(s) 49
BsaJI CCNNGG 4 cut(s) 84, 189, 390, 396
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 345
BseDI CCNNGG 4 cut(s) 84, 189, 390, 396
BseGI GGATG 1 cut(s) 89
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 345
BseRI GAGGAG 1 cut(s) 341
BseSI GKGCMC 1 cut(s) 34
BseYI CCCAGC 1 cut(s) 114
Bsh1236I CGCG 1 cut(s) 214
BshFI GGCC 6 cut(s) 40, 110, 182, 395, 401, 416
BshNI GGYRCC 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 34
BsiHKCI CYCGRG 2 cut(s) 323, 389
BsiSI CCGG 2 cut(s) 46, 427
BsiWI CGTACG 1 cut(s) 172
BslFI GGGAC 1 cut(s) 317
BsmFI GGGAC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 6 cut(s) 40, 110, 182, 395, 401, 416
BsoBI CYCGRG 2 cut(s) 323, 389
Bsp1286I GDGCHC 1 cut(s) 34
Bsp143I GATC 1 cut(s) 370
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 2 cut(s) 212, 227
BspANI GGCC 6 cut(s) 40, 110, 182, 395, 401, 416
BspCNI CTCAG 1 cut(s) 55
BspFNI CGCG 1 cut(s) 214
BspHI TCATGA 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 50
BspT107I GGYRCC 1 cut(s) 48
BsrBI CCGCTC 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 1 cut(s) 345
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 4 cut(s) 84, 189, 390, 396
BssMI GATC 1 cut(s) 370
BssNI GRCGYC 1 cut(s) 49
BssT1I CCWWGG 3 cut(s) 84, 189, 396
Bst4CI ACNGT 1 cut(s) 36
BstACI GRCGYC 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 120, 162
BstDEI CTNAG 5 cut(s) 26, 63, 143, 406, 418
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 1 cut(s) 89
BstFNI CGCG 1 cut(s) 214
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 1 cut(s) 373
BstMBI GATC 1 cut(s) 370
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 425
BstSLI GKGCMC 1 cut(s) 34
BstUI CGCG 1 cut(s) 214
BsuRI GGCC 6 cut(s) 40, 110, 182, 395, 401, 416
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 1 cut(s) 89
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 3 cut(s) 15, 256, 305
Cac8I GCNNGC 2 cut(s) 120, 162
CciI TCATGA 1 cut(s) 55
CfoI GCGC 1 cut(s) 51
Cfr10I RCCGGY 1 cut(s) 45
Csp6I GTAC 2 cut(s) 173, 430
CviAII CATG 2 cut(s) 56, 397
CviQI GTAC 2 cut(s) 173, 430
DdeI CTNAG 5 cut(s) 26, 63, 143, 406, 418
DinI GGCGCC 1 cut(s) 50
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
DrdI GACNNNNNNGTC 1 cut(s) 288
DseDI GACNNNNNNGTC 1 cut(s) 288
Eco130I CCWWGG 3 cut(s) 84, 189, 396
Eco147I AGGCCT 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 176
Eco88I CYCGRG 2 cut(s) 323, 389
EcoT14I CCWWGG 3 cut(s) 84, 189, 396
EgeI GGCGCC 1 cut(s) 50
EheI GGCGCC 1 cut(s) 50
ErhI CCWWGG 3 cut(s) 84, 189, 396
FaeI CATG 2 cut(s) 59, 400
FaiI YATR 7 cut(s) 57, 205, 207, 246, 369, 383, 398
FaqI GGGAC 1 cut(s) 317
FatI CATG 2 cut(s) 55, 396
FauI CCCGC 1 cut(s) 219
FauNDI CATATG 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 228
FokI GGATG 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 1 cut(s) 135
GlaI GCGC 1 cut(s) 50
GluI GCNGC 1 cut(s) 228
GsaI CCCAGC 1 cut(s) 118
HaeII RGCGCY 1 cut(s) 52
HaeIII GGCC 6 cut(s) 40, 110, 182, 395, 401, 416
HapII CCGG 2 cut(s) 46, 427
HhaI GCGC 1 cut(s) 51
Hin1I GRCGYC 1 cut(s) 49
Hin1II CATG 2 cut(s) 59, 400
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HinfI GANTC 2 cut(s) 96, 305
HpaII CCGG 2 cut(s) 46, 427
HphI GGTGA 2 cut(s) 35, 116
Hpy166II GTNNAC 1 cut(s) 32
Hpy188III TCNNGA 5 cut(s) 56, 93, 196, 323, 374
Hpy8I GTNNAC 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 2 cut(s) 32, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 5 cut(s) 26, 63, 143, 406, 418
HpySE526I ACGT 1 cut(s) 175
Hsp92I GRCGYC 1 cut(s) 49
Hsp92II CATG 2 cut(s) 59, 400
HspAI GCGC 1 cut(s) 49
KasI GGCGCC 1 cut(s) 48
Kzo9I GATC 1 cut(s) 370
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 8 cut(s) 59, 75, 106, 128, 132, 146, 164, 326
LweI GCATC 1 cut(s) 98
MaeI CTAG 1 cut(s) 135
MaeII ACGT 1 cut(s) 175
MalI GATC 1 cut(s) 372
MbiI CCGCTC 1 cut(s) 227
MboI GATC 1 cut(s) 370
MboII GAAGA 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 34
MluCI AATT 2 cut(s) 286, 318
Mly113I GGCGCC 1 cut(s) 49
MlyI GAGTC 2 cut(s) 105, 299
MslI CAYNNNNRTG 1 cut(s) 249
MspI CCGG 2 cut(s) 46, 427
MspR9I CCNGG 1 cut(s) 427
Mva1269I GAATGC 1 cut(s) 156
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 46
NarI GGCGCC 1 cut(s) 49
NciI CCSGG 1 cut(s) 427
NcoI CCATGG 1 cut(s) 396
NdeI CATATG 1 cut(s) 205
NdeII GATC 1 cut(s) 370
NlaIII CATG 2 cut(s) 59, 400
NlaIV GGNNCC 1 cut(s) 50
PaeR7I CTCGAG 1 cut(s) 323
PagI TCATGA 1 cut(s) 55
PceI AGGCCT 1 cut(s) 110
PctI GAATGC 1 cut(s) 156
Pfl23II CGTACG 1 cut(s) 172
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 2 cut(s) 104, 299
PluTI GGCGCC 1 cut(s) 52
PpsI GAGTC 2 cut(s) 104, 299
PspFI CCCAGC 1 cut(s) 114
PspLI CGTACG 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 50
RsaI GTAC 2 cut(s) 174, 431
RsaNI GTAC 2 cut(s) 173, 430
RseI CAYNNNNRTG 1 cut(s) 249
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 1 cut(s) 370
SchI GAGTC 2 cut(s) 105, 299
ScrFI CCNGG 1 cut(s) 427
SduI GDGCHC 1 cut(s) 34
SetI ASST 7 cut(s) 124, 178, 188, 195, 236, 266, 414
SfaNI GCATC 1 cut(s) 98
SfoI GGCGCC 1 cut(s) 50
Sfr274I CTCGAG 1 cut(s) 323
SgrAI CRCCGGYG 1 cut(s) 45
SlaI CTCGAG 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 2 cut(s) 323, 374
SmoI CTYRAG 2 cut(s) 323, 374
Sse9I AATT 2 cut(s) 286, 318
SseBI AGGCCT 1 cut(s) 110
SsiI CCGC 2 cut(s) 212, 227
SspDI GGCGCC 1 cut(s) 48
SspMI CTAG 1 cut(s) 135
StuI AGGCCT 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 425
StyI CCWWGG 3 cut(s) 84, 189, 396
TaaI ACNGT 1 cut(s) 36
TaiI ACGT 1 cut(s) 178
TaqI TCGA 4 cut(s) 99, 148, 280, 324
TaqII GACCGA 1 cut(s) 349
TasI AATT 2 cut(s) 286, 318
TauI GCSGC 1 cut(s) 230
TscAI CASTG 3 cut(s) 15, 256, 305
TspDTI ATGAA 1 cut(s) 347
TspRI CASTG 3 cut(s) 15, 256, 305
VneI GTGCAC 1 cut(s) 30
XapI RAATTY 1 cut(s) 318
XhoI CTCGAG 1 cut(s) 323
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.