pycom10g09940

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
13165830 .. 13167408
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g09940.3

Sequence Viewer

Length: 432 bp
ATGGGCACGACGGGTGTCCTTCCGGTCACGCCTTTGGGGCCAACGGTGTCTATGGCTCCTGCGTTATCGACTTCGTCGGTGATGCATCCTGTACTAAGCACTCAACGGACTCATCAACAGCCCCAGAGTTCTGAGAAGTATCACTATGAGCTCTCCAACCTCGATGCCAATCAAATGCAGTACATCAACGACCTTTGCTCCAGGAGGTTCACTCAATGGAAGAGCAACCTCCACAACCATTATGAGCTATATGACAATCTGGAGGTCACTCTAGTAGTTGGGTGCCCAATAAAGTTGGTGGACCGTCGGGATGAATGGGAGTGGCTCTGCGGCCATTTTCAAGACGAGAAATACCTCGGGGGGTCAAAGTTTCCGGAAATTGACATGTTCAAGGAAGTGTACATTCAGCCCAGGGATGAGCTGACGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

16.58

Weight (kDa)

5.29

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 282
AccIII TCCGGA 1 cut(s) 373
AciI CCGC 1 cut(s) 330
AcoI YGGCCR 1 cut(s) 331
AfaI GTAC 3 cut(s) 93, 182, 401
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 2 cut(s) 341, 391
AjnI CCWGG 2 cut(s) 200, 410
AluBI AGCT 3 cut(s) 151, 247, 421
AluI AGCT 3 cut(s) 151, 247, 421
Alw21I GWGCWC 1 cut(s) 153
Ama87I CYCGRG 1 cut(s) 356
Aor13HI TCCGGA 1 cut(s) 373
AoxI GGCC 2 cut(s) 38, 331
AspS9I GGNCC 2 cut(s) 38, 301
AsuHPI GGTGA 1 cut(s) 91
AvaI CYCGRG 1 cut(s) 356
AvaII GGWCC 1 cut(s) 301
BaeGI GKGCMC 2 cut(s) 8, 287
BanI GGYRCC 1 cut(s) 282
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 153
BciT130I CCWGG 2 cut(s) 202, 412
BfaI CTAG 1 cut(s) 272
BglI GCCNNNNNGGC 1 cut(s) 37
BisI GCNGC 1 cut(s) 331
BlsI GCNGC 1 cut(s) 332
Bme1390I CCNGG 2 cut(s) 202, 412
Bme18I GGWCC 1 cut(s) 301
BmeT110I CYCGRG 1 cut(s) 356
BmgT120I GGNCC 2 cut(s) 38, 301
BmiI GGNNCC 3 cut(s) 39, 57, 284
BmrFI CCNGG 2 cut(s) 202, 412
BmsI GCATC 3 cut(s) 72, 94, 154
BoxI GACNNNNGTC 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 196, 228
BpmI CTGGAG 2 cut(s) 184, 281
BsaBI GATNNNNATC 1 cut(s) 168
BsaJI CCNNGG 3 cut(s) 355, 410, 411
BsaWI WCCGGW 2 cut(s) 22, 373
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bse8I GATNNNNATC 1 cut(s) 168
BseAI TCCGGA 1 cut(s) 373
BseBI CCWGG 2 cut(s) 202, 412
BseDI CCNNGG 3 cut(s) 355, 410, 411
BseGI GGATG 3 cut(s) 85, 316, 421
BseJI GATNNNNATC 1 cut(s) 168
BseMII CTCAG 1 cut(s) 123
BseSI GKGCMC 2 cut(s) 8, 287
BshFI GGCC 2 cut(s) 40, 333
BshNI GGYRCC 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 2 cut(s) 23, 374
BsnI GGCC 2 cut(s) 40, 333
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 3 cut(s) 8, 153, 287
Bsp13I TCCGGA 1 cut(s) 373
Bsp1407I TGTACA 1 cut(s) 399
BspACI CCGC 1 cut(s) 330
BspANI GGCC 2 cut(s) 40, 333
BspCNI CTCAG 1 cut(s) 124
BspEI TCCGGA 1 cut(s) 373
BspLI GGNNCC 3 cut(s) 39, 57, 284
BspQI GCTCTTC 1 cut(s) 215
BspT107I GGYRCC 1 cut(s) 282
BsrGI TGTACA 1 cut(s) 399
BssECI CCNNGG 3 cut(s) 355, 410, 411
Bst2UI CCWGG 2 cut(s) 202, 412
Bst4CI ACNGT 2 cut(s) 46, 305
Bst6I CTCTTC 1 cut(s) 215
BstAUI TGTACA 1 cut(s) 399
BstDEI CTNAG 2 cut(s) 95, 132
BstF5I GGATG 3 cut(s) 85, 316, 421
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 2 cut(s) 202, 412
BstNSI RCATGY 1 cut(s) 388
BstPAI GACNNNNGTC 1 cut(s) 14
BstSCI CCNGG 2 cut(s) 200, 410
BstSLI GKGCMC 2 cut(s) 8, 287
BsuRI GGCC 2 cut(s) 40, 333
BtsCI GGATG 3 cut(s) 85, 316, 421
Cfr13I GGNCC 2 cut(s) 38, 301
Csp6I GTAC 3 cut(s) 92, 181, 400
CviAII CATG 1 cut(s) 385
CviJI RGCY 9 cut(s) 40, 56, 121, 151, 247, 325, 333, 409, 421
CviKI_1 RGCY 9 cut(s) 40, 56, 121, 151, 247, 325, 333, 409, 421
CviQI GTAC 3 cut(s) 92, 181, 400
DdeI CTNAG 2 cut(s) 95, 132
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Ecl136II GAGCTC 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 151
EcoRII CCWGG 2 cut(s) 200, 410
EcoT22I ATGCAT 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 1 cut(s) 388
FaiI YATR 6 cut(s) 53, 147, 243, 250, 252, 386
FatI CATG 1 cut(s) 384
Fnu4HI GCNGC 1 cut(s) 331
FokI GGATG 3 cut(s) 72, 323, 428
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 331
FspBI CTAG 1 cut(s) 272
GluI GCNGC 1 cut(s) 331
GsuI CTGGAG 2 cut(s) 184, 281
HaeIII GGCC 2 cut(s) 40, 333
HapII CCGG 2 cut(s) 23, 374
Hin1II CATG 1 cut(s) 388
HinfI GANTC 1 cut(s) 109
HpaII CCGG 2 cut(s) 23, 374
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 3 cut(s) 210, 301, 400
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 4 cut(s) 260, 308, 341, 374
Hpy8I GTNNAC 3 cut(s) 210, 301, 400
Hpy99I CGWCG 3 cut(s) 13, 79, 309
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 2 cut(s) 46, 305
HpyCH4V TGCA 2 cut(s) 85, 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 95, 132
Hsp92II CATG 1 cut(s) 388
Kpn2I TCCGGA 1 cut(s) 373
LguI GCTCTTC 1 cut(s) 215
LmnI GCTCC 2 cut(s) 61, 203
LweI GCATC 3 cut(s) 72, 94, 154
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 2 cut(s) 25, 265
MboII GAAGA 1 cut(s) 232
MhlI GDGCHC 3 cut(s) 8, 153, 287
MluCI AATT 1 cut(s) 378
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 5 cut(s) 170, 198, 239, 256, 365
Mph1103I ATGCAT 1 cut(s) 87
MroI TCCGGA 1 cut(s) 373
MspI CCGG 2 cut(s) 23, 374
MspR9I CCNGG 2 cut(s) 202, 412
MvaI CCWGG 2 cut(s) 202, 412
MwoI GCNNNNNNNGC 1 cut(s) 37
NlaIII CATG 1 cut(s) 388
NlaIV GGNNCC 3 cut(s) 39, 57, 284
NmuCI GTSAC 2 cut(s) 25, 265
NsiI ATGCAT 1 cut(s) 87
NspI RCATGY 1 cut(s) 388
PasI CCCWGGG 1 cut(s) 411
PciI ACATGT 1 cut(s) 384
PciSI GCTCTTC 1 cut(s) 215
PflFI GACNNNGTC 1 cut(s) 73
PfoI TCCNGGA 1 cut(s) 200
PkrI GCNGC 1 cut(s) 332
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PscI ACATGT 1 cut(s) 384
PshAI GACNNNNGTC 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 200, 410
PspGI CCWGG 2 cut(s) 200, 410
PspN4I GGNNCC 3 cut(s) 39, 57, 284
PspPI GGNCC 2 cut(s) 38, 301
PsyI GACNNNGTC 1 cut(s) 73
RsaI GTAC 3 cut(s) 93, 182, 401
RsaNI GTAC 3 cut(s) 92, 181, 400
SacI GAGCTC 1 cut(s) 153
SapI GCTCTTC 1 cut(s) 215
SatI GCNGC 1 cut(s) 331
Sau96I GGNCC 2 cut(s) 38, 301
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 2 cut(s) 202, 412
SduI GDGCHC 3 cut(s) 8, 153, 287
SetI ASST 9 cut(s) 153, 162, 195, 209, 231, 249, 267, 357, 423
SfaNI GCATC 3 cut(s) 72, 94, 154
SinI GGWCC 1 cut(s) 301
Sse9I AATT 1 cut(s) 378
SsiI CCGC 1 cut(s) 330
SspMI CTAG 1 cut(s) 272
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 200, 410
TaaI ACNGT 2 cut(s) 46, 305
TaqI TCGA 2 cut(s) 68, 162
TasI AATT 1 cut(s) 378
TatI WGTACW 3 cut(s) 91, 180, 399
TauI GCSGC 1 cut(s) 333
TseFI GTSAC 2 cut(s) 25, 265
Tsp45I GTSAC 2 cut(s) 25, 265
TspDTI ATGAA 1 cut(s) 327
TspGWI ACGGA 1 cut(s) 121
Tth111I GACNNNGTC 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 301
XceI RCATGY 1 cut(s) 388
XspI CTAG 1 cut(s) 272
Zsp2I ATGCAT 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.