pycom06g08420

Plant transposase (Ptta/En/Spm family)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
13575775 .. 13576504
730 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g08420.3

Sequence Viewer

Length: 399 bp
ATGATATGTTGGCGTACGTCAACAGGCACTTCGCTAAACGGCCCGAAGGAGTTTGAGTACCGGGAACATAATTGGGTATGGCTCTGCAGTCATTTTCAGGAGCCCAGCTATGTGAAGAAGGCAAAAGCCAACAAGAGCAATCGGGAGAAGAAGACTCTTCTCCACAATTCCGGTTCAATGCCCTTCTCATATAGGATGGAGGGCGATTCAAAATTCGCTTCATGTAAGTATTCTCTTGTTCCCTTCATTTTTCTTCTCTTTAGCGATGTTGATGTTCGACCCGGGAATGAGTTGGCCGAGTCCCTTCATAGGCAGTTGGTTCTTCAGGAGTCCGCCTCCCAGCTTCCTCCCGAGACTTTACTCAAGTCTATGGATCCCCTAGAGGATGCAGGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

133

Amino Acids

15.16

Weight (kDa)

6.9

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 333
AclWI GGATC 2 cut(s) 368, 381
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 308
AfaI GTAC 2 cut(s) 16, 59
AfiI CCNNNNNNNGG 1 cut(s) 309
AgsI TTSAA 2 cut(s) 177, 210
AluBI AGCT 2 cut(s) 108, 343
AluI AGCT 2 cut(s) 108, 343
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 2 cut(s) 368, 381
Ama87I CYCGRG 2 cut(s) 281, 350
AoxI GGCC 2 cut(s) 40, 294
ApoI RAATTY 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 41
AsuC2I CCSGG 3 cut(s) 62, 282, 283
AvaI CYCGRG 2 cut(s) 281, 350
BamHI GGATCC 1 cut(s) 373
BanII GRGCYC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 158
BccI CCATC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 55
BcnI CCSGG 3 cut(s) 62, 282, 283
BcoDI GTCTC 1 cut(s) 347
BfaI CTAG 1 cut(s) 380
BfmI CTRYAG 1 cut(s) 85
Bme1390I CCNGG 3 cut(s) 62, 282, 283
BmeT110I CYCGRG 2 cut(s) 281, 350
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 2 cut(s) 102, 375
BmrFI CCNGG 3 cut(s) 62, 282, 283
BmsI GCATC 1 cut(s) 376
BpiI GAAGAC 1 cut(s) 158
BplI GAGNNNNNCTC 2 cut(s) 320, 352
BpuEI CTTGAG 1 cut(s) 347
BpuMI CCSGG 3 cut(s) 62, 282, 283
BsaJI CCNNGG 1 cut(s) 281
BsaWI WCCGGW 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 2 cut(s) 201, 391
BseLI CCNNNNNNNGG 1 cut(s) 309
BseYI CCCAGC 2 cut(s) 104, 339
BshFI GGCC 2 cut(s) 42, 296
BsiHKCI CYCGRG 2 cut(s) 281, 350
BsiSI CCGG 3 cut(s) 61, 171, 282
BsiWI CGTACG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 309
BsmAI GTCTC 1 cut(s) 347
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 2 cut(s) 42, 296
BsoBI CYCGRG 2 cut(s) 281, 350
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 373
BspACI CCGC 1 cut(s) 333
BspANI GGCC 2 cut(s) 42, 296
BspLI GGNNCC 2 cut(s) 102, 375
BspMAI CTGCAG 1 cut(s) 89
BspPI GGATC 2 cut(s) 368, 381
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 1 cut(s) 373
Bst6I CTCTTC 1 cut(s) 162
BstF5I GGATG 2 cut(s) 201, 391
BstKTI GATC 1 cut(s) 376
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 1 cut(s) 373
BstSCI CCNGG 3 cut(s) 60, 280, 281
BstSFI CTRYAG 1 cut(s) 85
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BsuRI GGCC 2 cut(s) 42, 296
BtgZI GCGATG 1 cut(s) 279
BtsCI GGATG 2 cut(s) 201, 391
Cfr13I GGNCC 1 cut(s) 41
Cfr9I CCCGGG 1 cut(s) 281
Csp6I GTAC 2 cut(s) 15, 58
CviAII CATG 1 cut(s) 222
CviJI RGCY 7 cut(s) 42, 82, 103, 108, 128, 296, 343
CviKI_1 RGCY 7 cut(s) 42, 82, 103, 108, 128, 296, 343
CviQI GTAC 2 cut(s) 15, 58
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
EciI GGCGGA 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 308
Eco88I CYCGRG 2 cut(s) 281, 350
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 1 cut(s) 225
FaiI YATR 9 cut(s) 7, 69, 79, 111, 190, 192, 223, 309, 371
FaqI GGGAC 1 cut(s) 286
FatI CATG 1 cut(s) 221
FokI GGATG 1 cut(s) 208
FriOI GRGCYC 1 cut(s) 105
FspBI CTAG 1 cut(s) 380
GsaI CCCAGC 2 cut(s) 108, 343
HaeIII GGCC 2 cut(s) 42, 296
HapII CCGG 3 cut(s) 61, 171, 282
Hin1II CATG 1 cut(s) 225
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 4 cut(s) 154, 206, 299, 329
HpaII CCGG 3 cut(s) 61, 171, 282
Hpy166II GTNNAC 1 cut(s) 21
Hpy188III TCNNGA 4 cut(s) 98, 143, 326, 350
Hpy8I GTNNAC 1 cut(s) 21
HpyAV CCTTC 5 cut(s) 40, 112, 193, 253, 314
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 2 cut(s) 87, 389
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 1 cut(s) 225
Kzo9I GATC 1 cut(s) 373
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 9 cut(s) 9, 74, 83, 118, 184, 295, 311, 353, 375
LweI GCATC 1 cut(s) 376
MaeI CTAG 1 cut(s) 380
MaeII ACGT 1 cut(s) 17
MalI GATC 1 cut(s) 375
MboI GATC 1 cut(s) 373
MboII GAAGA 6 cut(s) 127, 149, 160, 163, 245, 314
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 3 cut(s) 70, 166, 212
MlyI GAGTC 3 cut(s) 148, 308, 338
MnlI CCTC 4 cut(s) 193, 346, 357, 376
MspI CCGG 3 cut(s) 61, 171, 282
MspR9I CCNGG 3 cut(s) 62, 282, 283
NciI CCSGG 3 cut(s) 62, 282, 283
NdeII GATC 1 cut(s) 373
NlaIII CATG 1 cut(s) 225
NlaIV GGNNCC 2 cut(s) 102, 375
NmeAIII GCCGAG 1 cut(s) 322
PfeI GAWTC 1 cut(s) 206
Pfl23II CGTACG 1 cut(s) 14
PleI GAGTC 3 cut(s) 148, 307, 337
PpsI GAGTC 3 cut(s) 148, 307, 337
PspFI CCCAGC 2 cut(s) 104, 339
PspLI CGTACG 1 cut(s) 14
PspN4I GGNNCC 2 cut(s) 102, 375
PspPI GGNCC 1 cut(s) 41
PstI CTGCAG 1 cut(s) 89
PsuI RGATCY 1 cut(s) 373
RsaI GTAC 2 cut(s) 16, 59
RsaNI GTAC 2 cut(s) 15, 58
Sau3AI GATC 1 cut(s) 373
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 3 cut(s) 148, 308, 338
ScrFI CCNGG 3 cut(s) 62, 282, 283
SduI GDGCHC 1 cut(s) 105
SetI ASST 3 cut(s) 20, 110, 345
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 85
SmaI CCCGGG 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 3 cut(s) 70, 166, 212
SsiI CCGC 1 cut(s) 333
SspMI CTAG 1 cut(s) 380
StyD4I CCNGG 3 cut(s) 60, 280, 281
TaiI ACGT 1 cut(s) 20
TaqI TCGA 1 cut(s) 277
TasI AATT 3 cut(s) 70, 166, 212
TfiI GAWTC 1 cut(s) 206
TspDTI ATGAA 3 cut(s) 210, 235, 296
TspMI CCCGGG 1 cut(s) 281
XapI RAATTY 1 cut(s) 212
XmaI CCCGGG 1 cut(s) 281
XspI CTAG 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.