pycom11g13710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000260
Physical Location & Seq
Forward (+)
13318683 .. 13319396
714 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g13710.2

Sequence Viewer

Length: 396 bp
ATGGCCTACTTAGAGGAGACCTTAGCAAATCGGTACAAACATTGGAAGAACTATCTTCACACGCATTTTAAGCGATGGGATGATCCGGAGTTTGCTTGCCTACATGGTTACCCAACCGAGTTGCAGGACCGCCCGGAGGATTGGGAGTGGCTCTGCAAACATTTTACAGACCCAAAATTTGTGAAGAAATCTATTGCTAGCAAGATAGCTCGTGACTCAAAGACACTTCTCCACCATTCTGGTTCGAAGCCCTTTTCGTATAGGCTTGAGGCACGACGTCAGGAGGGTTCTAAGTTCCCAGAGATCGACATGTTCGAGAACGTTTACGTTCGACCTGGTGATGAGATAGCTAAGCAGCTTCATCGCACTACTGTTCTCCAAGAAGCAACATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

132

Amino Acids

15.68

Weight (kDa)

7.83

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 280
AccIII TCCGGA 1 cut(s) 85
AciI CCGC 1 cut(s) 130
AclI AACGTT 1 cut(s) 321
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 277
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 136
AflIII ACRYGT 1 cut(s) 309
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 3 cut(s) 209, 350, 358
AluI AGCT 3 cut(s) 209, 350, 358
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 1 cut(s) 77
Aor13HI TCCGGA 1 cut(s) 85
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 355
ApoI RAATTY 1 cut(s) 176
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AspS9I GGNCC 1 cut(s) 127
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 350
AsuII TTCGAA 1 cut(s) 245
AsuNHI GCTAGC 1 cut(s) 197
AvaII GGWCC 1 cut(s) 127
BauI CACGAG 1 cut(s) 210
BbvI GCAGC 1 cut(s) 367
BccI CCATC 1 cut(s) 69
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 1 cut(s) 336
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 1 cut(s) 198
BisI GCNGC 1 cut(s) 356
BlpI GCTNAGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 357
Bme1390I CCNGG 2 cut(s) 134, 336
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmrFI CCNGG 2 cut(s) 134, 336
BmtI GCTAGC 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 22
Bpu1102I GCTNAGC 1 cut(s) 351
Bpu14I TTCGAA 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 277
BsaI GGTCTC 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 85
Bsc4I CCNNNNNNNGG 1 cut(s) 136
BseAI TCCGGA 1 cut(s) 85
BseBI CCWGG 1 cut(s) 336
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 367
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 2 cut(s) 86, 134
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 11
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 11
Bsp119I TTCGAA 1 cut(s) 245
Bsp13I TCCGGA 1 cut(s) 85
Bsp143I GATC 2 cut(s) 82, 303
Bsp1720I GCTNAGC 1 cut(s) 351
BspACI CCGC 1 cut(s) 130
BspANI GGCC 1 cut(s) 5
BspEI TCCGGA 1 cut(s) 85
BspOI GCTAGC 1 cut(s) 201
BspPI GGATC 1 cut(s) 77
BspT104I TTCGAA 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 11
BssMI GATC 2 cut(s) 82, 303
BssNI GRCGYC 1 cut(s) 277
BssSI CACGAG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 373
BstACI GRCGYC 1 cut(s) 277
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 2 cut(s) 97, 199
BstDEI CTNAG 4 cut(s) 10, 22, 291, 351
BstEII GGTNACC 1 cut(s) 107
BstF5I GGATG 1 cut(s) 85
BstKTI GATC 2 cut(s) 85, 306
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 2 cut(s) 82, 303
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 313
BstPI GGTNACC 1 cut(s) 107
BstSCI CCNGG 2 cut(s) 132, 334
BstV1I GCAGC 1 cut(s) 367
BstXI CCANNNNNNTGG 1 cut(s) 239
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 2 cut(s) 88, 347
BtsCI GGATG 1 cut(s) 85
Cac8I GCNNGC 2 cut(s) 97, 199
Cfr13I GGNCC 1 cut(s) 127
CsiI ACCWGGT 1 cut(s) 334
Csp6I GTAC 1 cut(s) 34
CviAII CATG 2 cut(s) 104, 310
CviJI RGCY 7 cut(s) 5, 151, 209, 250, 265, 350, 358
CviKI_1 RGCY 7 cut(s) 5, 151, 209, 250, 265, 350, 358
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 4 cut(s) 10, 22, 291, 351
DpnI GATC 2 cut(s) 84, 305
DpnII GATC 2 cut(s) 82, 303
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 127
Eco91I GGTNACC 1 cut(s) 107
EcoO65I GGTNACC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 2 cut(s) 107, 313
FaiI YATR 4 cut(s) 105, 261, 311, 394
FatI CATG 2 cut(s) 103, 309
Fnu4HI GCNGC 1 cut(s) 356
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 356
FspBI CTAG 1 cut(s) 198
GluI GCNGC 1 cut(s) 356
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 86, 134
Hin1I GRCGYC 1 cut(s) 277
Hin1II CATG 2 cut(s) 107, 313
HinfI GANTC 1 cut(s) 215
HpaII CCGG 2 cut(s) 86, 134
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 325
Hpy188III TCNNGA 4 cut(s) 86, 212, 281, 316
Hpy8I GTNNAC 1 cut(s) 325
Hpy99I CGWCG 1 cut(s) 279
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 3 cut(s) 277, 321, 327
HpyCH4V TGCA 2 cut(s) 124, 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpyF3I CTNAG 4 cut(s) 10, 22, 291, 351
HpySE526I ACGT 3 cut(s) 277, 321, 327
Hsp92I GRCGYC 1 cut(s) 277
Hsp92II CATG 2 cut(s) 107, 313
Kpn2I TCCGGA 1 cut(s) 85
Kzo9I GATC 2 cut(s) 82, 303
LpnPI CCDG 8 cut(s) 99, 110, 147, 225, 266, 312, 321, 348
Lsp1109I GCAGC 1 cut(s) 367
MabI ACCWGGT 1 cut(s) 334
MaeI CTAG 1 cut(s) 198
MaeII ACGT 3 cut(s) 277, 321, 327
MaeIII GTNAC 2 cut(s) 107, 212
MalI GATC 2 cut(s) 84, 305
MboI GATC 2 cut(s) 82, 303
MboII GAAGA 3 cut(s) 47, 58, 196
MluCI AATT 1 cut(s) 176
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 4 cut(s) 7, 130, 262, 277
MroI TCCGGA 1 cut(s) 85
MseI TTAA 1 cut(s) 69
MspI CCGG 2 cut(s) 86, 134
MspR9I CCNGG 2 cut(s) 134, 336
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 70
NciI CCSGG 1 cut(s) 134
NdeII GATC 2 cut(s) 82, 303
NheI GCTAGC 1 cut(s) 197
NlaIII CATG 2 cut(s) 107, 313
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 313
NspV TTCGAA 1 cut(s) 245
PciI ACATGT 1 cut(s) 309
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PkrI GCNGC 1 cut(s) 357
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PscI ACATGT 1 cut(s) 309
Psp1406I AACGTT 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 334
PspEI GGTNACC 1 cut(s) 107
PspGI CCWGG 1 cut(s) 334
PspPI GGNCC 1 cut(s) 127
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 1 cut(s) 356
Sau3AI GATC 2 cut(s) 82, 303
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 2 cut(s) 134, 336
SetI ASST 8 cut(s) 23, 211, 280, 324, 330, 337, 352, 360
SexAI ACCWGGT 1 cut(s) 334
SfuI TTCGAA 1 cut(s) 245
SinI GGWCC 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 1 cut(s) 176
SsiI CCGC 1 cut(s) 130
SspMI CTAG 1 cut(s) 198
StyD4I CCNGG 2 cut(s) 132, 334
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 3 cut(s) 280, 324, 330
TaqI TCGA 4 cut(s) 245, 306, 315, 331
TasI AATT 1 cut(s) 176
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 355
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 1 cut(s) 176
XceI RCATGY 1 cut(s) 313
XspI CTAG 1 cut(s) 198
ZraI GACGTC 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.