MD17G1199400.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
24067206 .. 24067608
403 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1199400.v1.1.491

Sequence Viewer

Length: 210 bp
ATGTCGAACTTAATTTCAAACCATAGGGTAGCTAGTAGGGTCAGTCAAACACCTTTTCTAGTAGGTAGTGCTGTTGCCACCTCCCCACCTGATAAGGGCACGACGGATGTCCCTCCGGTCACGCCTTTGGGGCCAACAGTGTCTACGGCTCATGCGTCATCGACTTCTTCAGTGACATATCATGTACTAAGTGCCCGGTGGACTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.17

Weight (kDa)

9.98

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 1 cut(s) 18
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
AoxI GGCC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 131
AsuC2I CCSGG 1 cut(s) 196
BaeGI GKGCMC 2 cut(s) 101, 196
BceAI ACGGC 1 cut(s) 162
BcnI CCSGG 1 cut(s) 196
BfaI CTAG 2 cut(s) 33, 59
BglI GCCNNNNNGGC 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 196
BoxI GACNNNNGTC 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 196
BsaWI WCCGGW 1 cut(s) 115
Bsc4I CCNNNNNNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 95
BseSI GKGCMC 2 cut(s) 101, 196
BshFI GGCC 1 cut(s) 133
BsiSI CCGG 2 cut(s) 116, 196
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 101, 196
BspANI GGCC 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 139
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstPAI GACNNNNGTC 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 194
BstSLI GKGCMC 2 cut(s) 101, 196
BsuRI GGCC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 2 cut(s) 144, 177
Cfr13I GGNCC 1 cut(s) 131
CseI GACGC 1 cut(s) 144
Csp6I GTAC 1 cut(s) 185
CviAII CATG 2 cut(s) 152, 182
CviJI RGCY 3 cut(s) 32, 133, 149
CviKI_1 RGCY 3 cut(s) 32, 133, 149
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 153
FaeI CATG 2 cut(s) 155, 185
FaiI YATR 4 cut(s) 24, 153, 178, 183
FaqI GGGAC 1 cut(s) 95
FatI CATG 2 cut(s) 151, 181
FblI GTMKAC 1 cut(s) 143
FokI GGATG 1 cut(s) 119
FspBI CTAG 2 cut(s) 33, 59
HaeIII GGCC 1 cut(s) 133
HapII CCGG 2 cut(s) 116, 196
HgaI GACGC 1 cut(s) 144
Hin1II CATG 2 cut(s) 155, 185
HinfI GANTC 1 cut(s) 202
HpaII CCGG 2 cut(s) 116, 196
Hpy166II GTNNAC 2 cut(s) 144, 201
Hpy8I GTNNAC 2 cut(s) 144, 201
Hpy99I CGWCG 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 1 cut(s) 188
Hsp92II CATG 2 cut(s) 155, 185
LpnPI CCDG 2 cut(s) 102, 129
MaeI CTAG 2 cut(s) 33, 59
MaeIII GTNAC 2 cut(s) 118, 172
MboII GAAGA 1 cut(s) 159
MhlI GDGCHC 2 cut(s) 101, 196
MluCI AATT 1 cut(s) 12
MlyI GAGTC 1 cut(s) 196
MnlI CCTC 2 cut(s) 91, 123
MseI TTAA 1 cut(s) 11
MspI CCGG 2 cut(s) 116, 196
MspR9I CCNGG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 130
NciI CCSGG 1 cut(s) 196
NlaIII CATG 2 cut(s) 155, 185
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 2 cut(s) 118, 172
PcsI WCGNNNNNNNCGW 1 cut(s) 152
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PshAI GACNNNNGTC 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 131
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SaqAI TTAA 1 cut(s) 11
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 2 cut(s) 101, 196
SetI ASST 5 cut(s) 34, 55, 67, 83, 91
SgeI CNNG 8 cut(s) 45, 71, 101, 112, 128, 133, 164, 194
Sse9I AATT 1 cut(s) 12
SspMI CTAG 2 cut(s) 33, 59
StyD4I CCNGG 1 cut(s) 194
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 2 cut(s) 5, 161
TasI AATT 1 cut(s) 12
TatI WGTACW 1 cut(s) 184
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 2 cut(s) 144, 177
TseFI GTSAC 2 cut(s) 118, 172
Tsp45I GTSAC 2 cut(s) 118, 172
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 2 cut(s) 144, 177
XmiI GTMKAC 1 cut(s) 143
XspI CTAG 2 cut(s) 33, 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.