pycom17g09630

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000260
Physical Location & Seq
Forward (+)
7320242 .. 7320973
732 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g09630.3

Sequence Viewer

Length: 369 bp
ATGTTGGCTCAGCCGCTCAGTGCACAGAGGCCTCACTGGCGCCGCCGCAAGCCTAAGCCTTCTGATCACACTTCCTCGGCATCCACAGTCGAGGGTGAGGCCTCCCAGCCAGCTAAAAAAAACACCAGGGGGTCTAGTCGAATGCTGAAGCAGGCACAGGGCGTATGTCAGGCTGCCTCCAAGATCAAGATTGCGTATGACTCGCGACATCTTGGAGCGGCTACCTCACAGCAGTATAGCAACGTCGTTAGTAGCTATGGTGTTGTTATTCGACAAAATTGTCCTTTTCAGTGGGAATCTTGGGCAAAAATTCTCGAGCAGACGAAGGAACTGGTGCGACACAAGTTGTCGGTCATTGATCGATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

123

Amino Acids

13.67

Weight (kDa)

10.33

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 279
AccB1I GGYRCC 1 cut(s) 39
AccBSI CCGCTC 2 cut(s) 16, 218
AccII CGCG 1 cut(s) 205
AciI CCGC 4 cut(s) 14, 43, 46, 218
AcsI RAATTY 1 cut(s) 309
AcuI CTGAAG 1 cut(s) 167
AcyI GRCGYC 1 cut(s) 40
AjnI CCWGG 1 cut(s) 125
AluBI AGCT 2 cut(s) 113, 255
AluI AGCT 2 cut(s) 113, 255
Alw21I GWGCWC 1 cut(s) 25
Alw44I GTGCAC 1 cut(s) 21
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 2 cut(s) 29, 99
ApaLI GTGCAC 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 309
AspLEI GCGC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 107
AvaI CYCGRG 1 cut(s) 314
BaeGI GKGCMC 1 cut(s) 25
BanI GGYRCC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 127
BclI TGATCA 1 cut(s) 64
BfaI CTAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 43
BglI GCCNNNNNGGC 1 cut(s) 37
BisI GCNGC 5 cut(s) 14, 43, 46, 174, 219
BlpI GCTNAGC 1 cut(s) 9
BlsI GCNGC 5 cut(s) 15, 44, 47, 175, 220
Bme1390I CCNGG 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 314
BmiI GGNNCC 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 54
Bpu1102I GCTNAGC 1 cut(s) 9
Bsa29I ATCGAT 1 cut(s) 361
BsaHI GRCGYC 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 75, 126
Bse1I ACTGG 2 cut(s) 41, 336
BseBI CCWGG 1 cut(s) 127
BseCI ATCGAT 1 cut(s) 361
BseDI CCNNGG 2 cut(s) 75, 126
BseGI GGATG 1 cut(s) 80
BseMII CTCAG 2 cut(s) 23, 31
BseNI ACTGG 2 cut(s) 41, 336
BseSI GKGCMC 1 cut(s) 25
BseXI GCAGC 1 cut(s) 160
BseYI CCCAGC 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 205
BshFI GGCC 2 cut(s) 31, 101
BshNI GGYRCC 1 cut(s) 39
BshVI ATCGAT 1 cut(s) 361
BsiHKAI GWGCWC 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 314
BsmI GAATGC 1 cut(s) 147
BsnI GGCC 2 cut(s) 31, 101
BsoBI CYCGRG 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 4 cut(s) 64, 183, 358, 362
Bsp1720I GCTNAGC 1 cut(s) 9
Bsp68I TCGCGA 1 cut(s) 205
BspACI CCGC 4 cut(s) 14, 43, 46, 218
BspANI GGCC 2 cut(s) 31, 101
BspCNI CTCAG 2 cut(s) 22, 30
BspDI ATCGAT 1 cut(s) 361
BspFNI CGCG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 39
BsrBI CCGCTC 2 cut(s) 16, 218
BsrI ACTGG 2 cut(s) 41, 336
BssECI CCNNGG 2 cut(s) 75, 126
BssMI GATC 4 cut(s) 64, 183, 358, 362
BssNI GRCGYC 1 cut(s) 40
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 40
BstC8I GCNNGC 3 cut(s) 50, 111, 153
BstDEI CTNAG 3 cut(s) 9, 17, 54
BstF5I GGATG 1 cut(s) 80
BstFNI CGCG 1 cut(s) 205
BstH2I RGCGCY 1 cut(s) 43
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 4 cut(s) 67, 186, 361, 365
BstMBI GATC 4 cut(s) 64, 183, 358, 362
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 125
BstSLI GKGCMC 1 cut(s) 25
BstUI CGCG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 160
Bsu15I ATCGAT 1 cut(s) 361
BsuRI GGCC 2 cut(s) 31, 101
BsuTUI ATCGAT 1 cut(s) 361
BtsCI GGATG 1 cut(s) 80
BtsIMutI CAGTG 3 cut(s) 25, 34, 296
BtuMI TCGCGA 1 cut(s) 205
Cac8I GCNNGC 3 cut(s) 50, 111, 153
CfoI GCGC 1 cut(s) 42
ClaI ATCGAT 1 cut(s) 361
DdeI CTNAG 3 cut(s) 9, 17, 54
DinI GGCGCC 1 cut(s) 41
DpnI GATC 4 cut(s) 66, 185, 360, 364
DpnII GATC 4 cut(s) 64, 183, 358, 362
DrdI GACNNNNNNGTC 1 cut(s) 279
DseDI GACNNNNNNGTC 1 cut(s) 279
Eco147I AGGCCT 2 cut(s) 31, 101
Eco57I CTGAAG 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 125
EgeI GGCGCC 1 cut(s) 41
EheI GGCGCC 1 cut(s) 41
FaiI YATR 4 cut(s) 166, 198, 237, 258
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 5 cut(s) 14, 43, 46, 174, 219
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 5 cut(s) 14, 43, 46, 174, 219
FspBI CTAG 1 cut(s) 135
GlaI GCGC 1 cut(s) 41
GluI GCNGC 5 cut(s) 14, 43, 46, 174, 219
GsaI CCCAGC 1 cut(s) 109
HaeII RGCGCY 1 cut(s) 43
HaeIII GGCC 2 cut(s) 31, 101
HhaI GCGC 1 cut(s) 42
Hin1I GRCGYC 1 cut(s) 40
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HinfI GANTC 2 cut(s) 200, 296
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 4 cut(s) 187, 204, 314, 366
Hpy8I GTNNAC 1 cut(s) 23
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 2 cut(s) 69, 319
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 3 cut(s) 9, 17, 54
HpySE526I ACGT 1 cut(s) 243
Hsp92I GRCGYC 1 cut(s) 40
HspAI GCGC 1 cut(s) 40
KasI GGCGCC 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 4 cut(s) 64, 183, 358, 362
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 9 cut(s) 22, 112, 119, 123, 137, 139, 143, 155, 317
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 89
MaeI CTAG 1 cut(s) 135
MaeII ACGT 1 cut(s) 243
MalI GATC 4 cut(s) 66, 185, 360, 364
MbiI CCGCTC 2 cut(s) 16, 218
MboI GATC 4 cut(s) 64, 183, 358, 362
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 2 cut(s) 277, 309
Mly113I GGCGCC 1 cut(s) 40
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 8 cut(s) 21, 42, 85, 85, 91, 112, 187, 235
MspR9I CCNGG 1 cut(s) 127
Mva1269I GAATGC 1 cut(s) 147
MvaI CCWGG 1 cut(s) 127
MvnI CGCG 1 cut(s) 205
MwoI GCNNNNNNNGC 1 cut(s) 37
NarI GGCGCC 1 cut(s) 40
NdeII GATC 4 cut(s) 64, 183, 358, 362
NlaIV GGNNCC 1 cut(s) 41
NmeAIII GCCGAG 1 cut(s) 56
NruI TCGCGA 1 cut(s) 205
PaeR7I CTCGAG 1 cut(s) 314
PceI AGGCCT 2 cut(s) 31, 101
PctI GAATGC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 296
PkrI GCNGC 5 cut(s) 15, 44, 47, 175, 220
PleI GAGTC 1 cut(s) 194
PluTI GGCGCC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 105
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 41
RruI TCGCGA 1 cut(s) 205
SatI GCNGC 5 cut(s) 14, 43, 46, 174, 219
Sau3AI GATC 4 cut(s) 64, 183, 358, 362
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 127
SduI GDGCHC 1 cut(s) 25
SetI ASST 4 cut(s) 115, 227, 246, 257
SfaNI GCATC 1 cut(s) 89
SfoI GGCGCC 1 cut(s) 41
Sfr274I CTCGAG 1 cut(s) 314
SlaI CTCGAG 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 2 cut(s) 277, 309
SseBI AGGCCT 2 cut(s) 31, 101
SsiI CCGC 4 cut(s) 14, 43, 46, 218
SspDI GGCGCC 1 cut(s) 39
SspMI CTAG 1 cut(s) 135
StuI AGGCCT 2 cut(s) 31, 101
StyD4I CCNGG 1 cut(s) 125
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 1 cut(s) 246
TaqI TCGA 5 cut(s) 90, 139, 271, 315, 361
TaqII GACCGA 1 cut(s) 340
TasI AATT 2 cut(s) 277, 309
TauI GCSGC 4 cut(s) 16, 45, 48, 221
TfiI GAWTC 1 cut(s) 296
TscAI CASTG 3 cut(s) 25, 41, 296
TseI GCWGC 1 cut(s) 173
TspRI CASTG 3 cut(s) 25, 41, 296
VneI GTGCAC 1 cut(s) 21
XapI RAATTY 1 cut(s) 309
XhoI CTCGAG 1 cut(s) 314
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.