MD15G1306500.v1.1

Plant transposase (Ptta/En/Spm family)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
30315539 .. 30319620
4082 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1306500.v1.1.491

Sequence Viewer

Length: 543 bp
ATGTTGAAGGAGCTACAGCTTGTACGTATGTCTGCCTCCTTGATCAAGATTGCGTATGATGAGCGACATCGTGGAGCGGTTACCTCACAGCAGCATAACAGCGTCGTTAATTGCTGTGGTTTTATTATTAGGAATTTTTGTCCTATGCGGTGGGAGAGTTGGGCAAAAATTCCCGAGGAGACAAGGACCCTGGTGCGAGACAATTTGGAGGTCGTTTTTGAAATGGAGGACATATCCCCTGAGGTCAGTGCCTACTTAGAGGAGACATTAGCAAGCCGGTATAAAGATTGGAAGAGCGCTCTTCACAAGCATTATCAGCTATGGGAATCTCCGGAGATTGCTCGCCTACAGGGTTGCCCACTCGAGTATAAGGAACGGCGAGAGGATTGGGAGTGGCTCTGCACATATTTTACGGATCCAAAATTTTTGAAGAAATCTGCTGCTGGCAAGAAAGCTCGGGACTCAAAGACACTTCTCCACCATTCCGGTTCGAAGCCCTTTTCGTATAGGGTTGAGGCACGACGTGAGGTAAAAGTATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

181

Amino Acids

21.33

Weight (kDa)

8.75

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 77
AccIII TCCGGA 1 cut(s) 331
AciI CCGC 2 cut(s) 77, 148
AclWI GGATC 2 cut(s) 410, 423
AcsI RAATTY 3 cut(s) 133, 168, 422
AdeI CACNNNGTG 1 cut(s) 524
AfaI GTAC 1 cut(s) 24
AfeI AGCGCT 1 cut(s) 298
AgsI TTSAA 3 cut(s) 7, 221, 430
AjiI CACGTC 1 cut(s) 524
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 4 cut(s) 13, 19, 319, 455
AluI AGCT 4 cut(s) 13, 19, 319, 455
Alw26I GTCTC 3 cut(s) 173, 192, 257
AlwI GGATC 2 cut(s) 410, 423
Ama87I CYCGRG 3 cut(s) 173, 362, 456
Aor13HI TCCGGA 1 cut(s) 331
Aor51HI AGCGCT 1 cut(s) 298
ApeKI GCWGC 2 cut(s) 91, 440
ApoI RAATTY 3 cut(s) 133, 168, 422
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 186
AsuII TTCGAA 1 cut(s) 491
AvaI CYCGRG 3 cut(s) 173, 362, 456
AvaII GGWCC 1 cut(s) 186
AxyI CCTNAGG 1 cut(s) 240
BamHI GGATCC 1 cut(s) 415
BbvI GCAGC 2 cut(s) 103, 427
BceAI ACGGC 1 cut(s) 392
BciT130I CCWGG 1 cut(s) 191
BclI TGATCA 1 cut(s) 42
BcoDI GTCTC 3 cut(s) 173, 192, 257
BfmI CTRYAG 2 cut(s) 14, 347
BfoI RGCGCY 1 cut(s) 300
BisI GCNGC 2 cut(s) 92, 441
BlsI GCNGC 2 cut(s) 93, 442
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 186
BmeT110I CYCGRG 3 cut(s) 173, 362, 456
BmgBI CACGTC 1 cut(s) 524
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 2 cut(s) 188, 417
BmrFI CCNGG 1 cut(s) 191
Bpu14I TTCGAA 1 cut(s) 491
BsaAI YACGTR 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 174, 189
BsaWI WCCGGW 2 cut(s) 331, 485
Bse118I RCCGGY 1 cut(s) 276
Bse21I CCTNAGG 1 cut(s) 240
BseAI TCCGGA 1 cut(s) 331
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 2 cut(s) 174, 189
BseMII CTCAG 1 cut(s) 231
BseRI GAGGAG 2 cut(s) 191, 275
BseXI GCAGC 2 cut(s) 103, 427
BsgI GTGCAG 1 cut(s) 385
BsiHKCI CYCGRG 3 cut(s) 173, 362, 456
BsiSI CCGG 3 cut(s) 277, 332, 486
BslFI GGGAC 1 cut(s) 473
BsmAI GTCTC 3 cut(s) 173, 192, 257
BsmFI GGGAC 1 cut(s) 473
BsoBI CYCGRG 3 cut(s) 173, 362, 456
Bsp119I TTCGAA 1 cut(s) 491
Bsp13I TCCGGA 1 cut(s) 331
Bsp143I GATC 2 cut(s) 42, 415
BspACI CCGC 2 cut(s) 77, 148
BspCNI CTCAG 1 cut(s) 232
BspEI TCCGGA 1 cut(s) 331
BspLI GGNNCC 2 cut(s) 188, 417
BspPI GGATC 2 cut(s) 410, 423
BspQI GCTCTTC 2 cut(s) 287, 306
BspT104I TTCGAA 1 cut(s) 491
BsrBI CCGCTC 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 276
BssAI RCCGGY 1 cut(s) 276
BssECI CCNNGG 2 cut(s) 174, 189
BssMI GATC 2 cut(s) 42, 415
Bst2UI CCWGG 1 cut(s) 191
Bst6I CTCTTC 2 cut(s) 287, 306
BstBAI YACGTR 1 cut(s) 26
BstBI TTCGAA 1 cut(s) 491
BstC8I GCNNGC 3 cut(s) 274, 343, 445
BstDEI CTNAG 2 cut(s) 240, 256
BstEII GGTNACC 1 cut(s) 79
BstH2I RGCGCY 1 cut(s) 300
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 2 cut(s) 45, 418
BstMAI GTCTC 3 cut(s) 173, 192, 257
BstMBI GATC 2 cut(s) 42, 415
BstMWI GCNNNNNNNGC 1 cut(s) 316
BstNI CCWGG 1 cut(s) 191
BstPI GGTNACC 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 2 cut(s) 14, 347
BstSNI TACGTA 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 103, 427
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
Bsu36I CCTNAGG 1 cut(s) 240
BtrI CACGTC 1 cut(s) 524
BtsIMutI CAGTG 1 cut(s) 253
Cac8I GCNNGC 3 cut(s) 274, 343, 445
CfoI GCGC 1 cut(s) 299
Cfr10I RCCGGY 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 186
CseI GACGC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 23
CviJI RGCY 7 cut(s) 13, 19, 276, 319, 397, 455, 496
CviKI_1 RGCY 7 cut(s) 13, 19, 276, 319, 397, 455, 496
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 2 cut(s) 240, 256
DpnI GATC 2 cut(s) 44, 417
DpnII GATC 2 cut(s) 42, 415
DraIII CACNNNGTG 1 cut(s) 524
Eam1104I CTCTTC 2 cut(s) 287, 306
EarI CTCTTC 2 cut(s) 287, 306
Eco105I TACGTA 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 186
Eco47III AGCGCT 1 cut(s) 298
Eco81I CCTNAGG 1 cut(s) 240
Eco88I CYCGRG 3 cut(s) 173, 362, 456
Eco91I GGTNACC 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 186
EcoO65I GGTNACC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 189
FaqI GGGAC 1 cut(s) 473
FbaI TGATCA 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 92, 441
Fsp4HI GCNGC 2 cut(s) 92, 441
GlaI GCGC 1 cut(s) 298
GluI GCNGC 2 cut(s) 92, 441
HaeII RGCGCY 1 cut(s) 300
HapII CCGG 3 cut(s) 277, 332, 486
HgaI GACGC 1 cut(s) 91
HhaI GCGC 1 cut(s) 299
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HinfI GANTC 2 cut(s) 326, 461
HpaII CCGG 3 cut(s) 277, 332, 486
Hpy188III TCNNGA 4 cut(s) 46, 173, 332, 458
Hpy99I CGWCG 2 cut(s) 107, 525
HpyCH4IV ACGT 2 cut(s) 25, 523
HpyCH4V TGCA 1 cut(s) 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 316
HpyF3I CTNAG 2 cut(s) 240, 256
HpySE526I ACGT 2 cut(s) 25, 523
HspAI GCGC 1 cut(s) 297
Kpn2I TCCGGA 1 cut(s) 331
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 2 cut(s) 42, 415
LguI GCTCTTC 2 cut(s) 287, 306
LmnI GCTCC 2 cut(s) 10, 74
LpnPI CCDG 8 cut(s) 176, 203, 252, 290, 335, 345, 429, 499
Lsp1109I GCAGC 2 cut(s) 103, 427
MaeII ACGT 2 cut(s) 25, 523
MaeIII GTNAC 1 cut(s) 79
MalI GATC 2 cut(s) 44, 417
MbiI CCGCTC 1 cut(s) 77
MboI GATC 2 cut(s) 42, 415
MboII GAAGA 3 cut(s) 293, 304, 442
MflI RGATCY 1 cut(s) 415
MluCI AATT 5 cut(s) 109, 133, 168, 202, 422
MlyI GAGTC 1 cut(s) 455
MroI TCCGGA 1 cut(s) 331
MseI TTAA 2 cut(s) 108, 541
MspI CCGG 3 cut(s) 277, 332, 486
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 316
NdeII GATC 2 cut(s) 42, 415
NlaIV GGNNCC 2 cut(s) 188, 417
NspV TTCGAA 1 cut(s) 491
PaeR7I CTCGAG 1 cut(s) 362
PciSI GCTCTTC 2 cut(s) 287, 306
PfeI GAWTC 1 cut(s) 326
PkrI GCNGC 2 cut(s) 93, 442
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
Ppu21I YACGTR 1 cut(s) 26
PpuMI RGGWCCY 1 cut(s) 186
Psp5II RGGWCCY 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 189
PspEI GGTNACC 1 cut(s) 79
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 2 cut(s) 188, 417
PspPI GGNCC 1 cut(s) 186
PspPPI RGGWCCY 1 cut(s) 186
PspXI VCTCGAGB 1 cut(s) 362
PsuI RGATCY 1 cut(s) 415
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SapI GCTCTTC 2 cut(s) 287, 306
SaqAI TTAA 2 cut(s) 108, 541
SatI GCNGC 2 cut(s) 92, 441
Sau3AI GATC 2 cut(s) 42, 415
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 1 cut(s) 191
SfcI CTRYAG 2 cut(s) 14, 347
Sfr274I CTCGAG 1 cut(s) 362
SfuI TTCGAA 1 cut(s) 491
SinI GGWCC 1 cut(s) 186
SlaI CTCGAG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SnaBI TACGTA 1 cut(s) 26
Sse9I AATT 5 cut(s) 109, 133, 168, 202, 422
SsiI CCGC 2 cut(s) 77, 148
StyD4I CCNGG 1 cut(s) 189
TaiI ACGT 2 cut(s) 28, 526
TaqI TCGA 2 cut(s) 363, 491
TasI AATT 5 cut(s) 109, 133, 168, 202, 422
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 2 cut(s) 108, 541
Tru9I TTAA 2 cut(s) 108, 541
TscAI CASTG 1 cut(s) 253
TseI GCWGC 2 cut(s) 91, 440
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 3 cut(s) 133, 168, 422
XhoI CTCGAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.