pycom02g16940

MULE transposase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000260
Physical Location & Seq
Reverse (-)
14263503 .. 14279085
15583 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g16940.2

Sequence Viewer

Length: 486 bp
ATGGCTTGTTCTCGTACATTTACGTTATGTTTCTTTAGTTATTTTAGTTCTTTATGCTTCTTTTGTGTGTTTTCAGGTTCTAAGGGCTTAGGGAGCAACAAGGAGGCCGTTTGGCTTATTAGAAGTCGTAAGGCAGTGATGATTGCACCCCGTTCAATTCCCTCACCTCCTACTTCAACCGCCACTGCTCCAGCAGACATGGACCCCAGGCCGTTAGATCTGGTTGGTCCCCAGGTCTTCCAGGCAGTCGCGTCATCAGCCTCTTCAGTAGCGCTATCTGTTAGTGCTAGGCGTGGTCACTGCCGCCCCCGCACAACCGACTGGACATCGGCATTCACTACTGATGCCTCAGGGTCACAACAAGTAAAGAAAAATACCCAAGGACCTTATCGCCAGTTGAAGACGGCGAAGGTCACCCGAGTGACCAATGGACGTATCACAATCGGATACGACAACCGGCATCAGGCTGCACCAACGCCCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

162

Amino Acids

17.43

Weight (kDa)

10.19

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 251
AciI CCGC 3 cut(s) 180, 304, 310
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 1 cut(s) 16
AfeI AGCGCT 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 463
AgsI TTSAA 3 cut(s) 156, 177, 400
AjnI CCWGG 3 cut(s) 206, 231, 240
AleI CACNNNNGTG 1 cut(s) 419
Ama87I CYCGRG 2 cut(s) 417, 479
Aor51HI AGCGCT 1 cut(s) 273
AoxI GGCC 2 cut(s) 105, 209
ApeKI GCWGC 1 cut(s) 467
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 3 cut(s) 202, 227, 383
AsuHPI GGTGA 2 cut(s) 156, 406
AvaI CYCGRG 2 cut(s) 417, 479
AvaII GGWCC 3 cut(s) 202, 227, 383
AxyI CCTNAGG 1 cut(s) 349
BbsI GAAGAC 2 cut(s) 229, 407
BbvI GCAGC 1 cut(s) 454
BceAI ACGGC 3 cut(s) 92, 196, 420
BciT130I CCWGG 3 cut(s) 208, 233, 242
BciVI GTATCC 1 cut(s) 440
BfaI CTAG 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 275
BfuI GTATCC 1 cut(s) 440
BglII AGATCT 1 cut(s) 217
BisI GCNGC 2 cut(s) 304, 468
BlsI GCNGC 2 cut(s) 305, 469
Bme1390I CCNGG 3 cut(s) 208, 233, 242
Bme18I GGWCC 3 cut(s) 202, 227, 383
BmeT110I CYCGRG 2 cut(s) 417, 479
BmgT120I GGNCC 3 cut(s) 202, 227, 383
BmiI GGNNCC 2 cut(s) 204, 229
BmrFI CCNGG 3 cut(s) 208, 233, 242
BmsI GCATC 2 cut(s) 334, 469
BpiI GAAGAC 2 cut(s) 229, 407
BpmI CTGGAG 1 cut(s) 174
Bpu10I CCTNAGC 1 cut(s) 88
BsaJI CCNNGG 3 cut(s) 206, 231, 379
Bsc4I CCNNNNNNNGG 1 cut(s) 463
Bse118I RCCGGY 1 cut(s) 456
Bse1I ACTGG 2 cut(s) 326, 394
Bse21I CCTNAGG 1 cut(s) 349
BseBI CCWGG 3 cut(s) 208, 233, 242
BseDI CCNNGG 3 cut(s) 206, 231, 379
BseLI CCNNNNNNNGG 1 cut(s) 463
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 2 cut(s) 326, 394
BseXI GCAGC 1 cut(s) 454
BsgI GTGCAG 1 cut(s) 453
Bsh1236I CGCG 1 cut(s) 251
BshFI GGCC 2 cut(s) 107, 211
BsiHKCI CYCGRG 2 cut(s) 417, 479
BsiSI CCGG 1 cut(s) 457
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 463
BsmFI GGGAC 1 cut(s) 213
BsmI GAATGC 1 cut(s) 332
BsnI GGCC 2 cut(s) 107, 211
BsoBI CYCGRG 2 cut(s) 417, 479
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 3 cut(s) 180, 304, 310
BspANI GGCC 2 cut(s) 107, 211
BspCNI CTCAG 1 cut(s) 362
BspFNI CGCG 1 cut(s) 251
BspLI GGNNCC 2 cut(s) 204, 229
BsrFI RCCGGY 1 cut(s) 456
BsrI ACTGG 2 cut(s) 326, 394
BssAI RCCGGY 1 cut(s) 456
BssECI CCNNGG 3 cut(s) 206, 231, 379
BssMI GATC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 379
Bst2UI CCWGG 3 cut(s) 208, 233, 242
Bst6I CTCTTC 1 cut(s) 268
BstDEI CTNAG 3 cut(s) 81, 88, 349
BstEII GGTNACC 1 cut(s) 412
BstFNI CGCG 1 cut(s) 251
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 3 cut(s) 93, 257, 309
BstNI CCWGG 3 cut(s) 208, 233, 242
BstPI GGTNACC 1 cut(s) 412
BstSCI CCNGG 3 cut(s) 206, 231, 240
BstUI CGCG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 454
BstV2I GAAGAC 2 cut(s) 229, 407
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
Bsu36I CCTNAGG 1 cut(s) 349
BsuI GTATCC 1 cut(s) 440
BsuRI GGCC 2 cut(s) 107, 211
BtsI GCAGTG 3 cut(s) 141, 183, 298
BtsIMutI CAGTG 3 cut(s) 141, 183, 298
CfoI GCGC 1 cut(s) 274
Cfr10I RCCGGY 1 cut(s) 456
Cfr13I GGNCC 3 cut(s) 202, 227, 383
CseI GACGC 1 cut(s) 240
Csp6I GTAC 1 cut(s) 15
CviAII CATG 1 cut(s) 199
CviJI RGCY 7 cut(s) 5, 87, 107, 115, 211, 260, 467
CviKI_1 RGCY 7 cut(s) 5, 87, 107, 115, 211, 260, 467
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 3 cut(s) 81, 88, 349
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 379
Eco47I GGWCC 3 cut(s) 202, 227, 383
Eco47III AGCGCT 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 249
Eco81I CCTNAGG 1 cut(s) 349
Eco88I CYCGRG 2 cut(s) 417, 479
Eco91I GGTNACC 1 cut(s) 412
EcoO109I RGGNCCY 1 cut(s) 383
EcoO65I GGTNACC 1 cut(s) 412
EcoRII CCWGG 3 cut(s) 206, 231, 240
EcoT14I CCWWGG 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 379
FaeI CATG 1 cut(s) 202
FaiI YATR 3 cut(s) 28, 55, 200
FaqI GGGAC 1 cut(s) 213
FatI CATG 1 cut(s) 198
FauI CCCGC 1 cut(s) 317
Fnu4HI GCNGC 2 cut(s) 304, 468
Fsp4HI GCNGC 2 cut(s) 304, 468
FspBI CTAG 1 cut(s) 288
GlaI GCGC 1 cut(s) 273
GluI GCNGC 2 cut(s) 304, 468
GsuI CTGGAG 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 275
HaeIII GGCC 2 cut(s) 107, 211
HapII CCGG 1 cut(s) 457
HgaI GACGC 1 cut(s) 240
HhaI GCGC 1 cut(s) 274
Hin1II CATG 1 cut(s) 202
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HpaII CCGG 1 cut(s) 457
HphI GGTGA 2 cut(s) 156, 406
Hpy188I TCNGA 1 cut(s) 446
HpyAV CCTTC 1 cut(s) 403
HpyCH4IV ACGT 2 cut(s) 23, 433
HpyCH4V TGCA 2 cut(s) 146, 470
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 257, 309
HpyF3I CTNAG 3 cut(s) 81, 88, 349
HpySE526I ACGT 2 cut(s) 23, 433
Hsp92II CATG 1 cut(s) 202
HspAI GCGC 1 cut(s) 272
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 2 cut(s) 93, 193
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 2 cut(s) 334, 469
MaeI CTAG 1 cut(s) 288
MaeII ACGT 2 cut(s) 23, 433
MaeIII GTNAC 4 cut(s) 296, 354, 412, 421
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 3 cut(s) 229, 255, 412
MflI RGATCY 1 cut(s) 217
MluCI AATT 1 cut(s) 156
MnlI CCTC 5 cut(s) 97, 172, 177, 271, 358
MslI CAYNNNNRTG 1 cut(s) 419
MspI CCGG 1 cut(s) 457
MspR9I CCNGG 3 cut(s) 208, 233, 242
Mva1269I GAATGC 1 cut(s) 332
MvaI CCWGG 3 cut(s) 208, 233, 242
MvnI CGCG 1 cut(s) 251
MwoI GCNNNNNNNGC 3 cut(s) 93, 257, 309
NdeII GATC 1 cut(s) 217
NlaIII CATG 1 cut(s) 202
NlaIV GGNNCC 2 cut(s) 204, 229
NmuCI GTSAC 4 cut(s) 296, 354, 412, 421
OliI CACNNNNGTG 1 cut(s) 419
PctI GAATGC 1 cut(s) 332
PkrI GCNGC 2 cut(s) 305, 469
PpuMI RGGWCCY 1 cut(s) 383
Psp5II RGGWCCY 1 cut(s) 383
Psp6I CCWGG 3 cut(s) 206, 231, 240
PspEI GGTNACC 1 cut(s) 412
PspGI CCWGG 3 cut(s) 206, 231, 240
PspN4I GGNNCC 2 cut(s) 204, 229
PspPI GGNCC 3 cut(s) 202, 227, 383
PspPPI RGGWCCY 1 cut(s) 383
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 419
SatI GCNGC 2 cut(s) 304, 468
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 3 cut(s) 202, 227, 383
ScrFI CCNGG 3 cut(s) 208, 233, 242
SetI ASST 7 cut(s) 26, 79, 169, 237, 388, 414, 436
SfaNI GCATC 2 cut(s) 334, 469
SinI GGWCC 3 cut(s) 202, 227, 383
SmiMI CAYNNNNRTG 1 cut(s) 419
Sse9I AATT 1 cut(s) 156
SsiI CCGC 3 cut(s) 180, 304, 310
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 3 cut(s) 206, 231, 240
StyI CCWWGG 1 cut(s) 379
TaiI ACGT 2 cut(s) 26, 436
TasI AATT 1 cut(s) 156
TauI GCSGC 1 cut(s) 306
TscAI CASTG 3 cut(s) 141, 190, 305
TseFI GTSAC 4 cut(s) 296, 354, 412, 421
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 4 cut(s) 296, 354, 412, 421
TspRI CASTG 3 cut(s) 141, 190, 305
VpaK11BI GGWCC 3 cut(s) 202, 227, 383
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.