pycom17g16800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000260
Physical Location & Seq
Forward (+)
14803237 .. 14804055
819 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 555 bp
ATGTTGAAAACCACGAAACTTGAGGGTAGTAAACTGATATTTACCCTATATATAAATATTATTTATTTATTGCATTGGATACATATTGTTTATTGTTATTTTTTAGGGTTTGGAAAATGTTTTAATTATATGGAGGTTCTGCCGAAATTTTGGTACCAAGAAAAACACCTAGGGATCTTGCAGCAATTGAAGACAATAAAGGTCACCCGAGTGACCAACGATTGTATTACAATCGGATACAATGAGCAACATCTGGTTGCACCAACGATAGAACAACATAGTGCATTGGCCCACAACATTGGGCACATTGTTTGGACCTTTTGCCTTATGCGGTGGAACAATAAGTATCCTCGCCTTTTTAATGGTTTTCATATAAAATTTATATATTTATATTTATTAATTTATTTAAATACTAATACTTTCGTAATATTTGTTACATTGCAGACAAACTACAATTTCAGCAACATTAATGAGCACATGTTGTCCGTTCTATTCCGGGGATTAGAAGGGATTAACAACAAAACAATGACTGCGGGGGAGTTTGGACGAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

185

Amino Acids

21.84

Weight (kDa)

9.25

Isoelectric Point (pI)

34.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 153
AccB1I GGYRCC 1 cut(s) 153
AciI CCGC 2 cut(s) 331, 533
AclWI GGATC 1 cut(s) 182
AcsI RAATTY 3 cut(s) 146, 377, 549
AfaI GTAC 1 cut(s) 155
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 2 cut(s) 7, 190
AleI CACNNNNGTG 1 cut(s) 209
Alw21I GWGCWC 1 cut(s) 477
AlwI GGATC 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 207
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 1 cut(s) 181
ApoI RAATTY 3 cut(s) 146, 377, 549
AseI ATTAAT 2 cut(s) 398, 468
Asp718I GGTACC 1 cut(s) 153
AspA2I CCTAGG 1 cut(s) 169
AspS9I GGNCC 2 cut(s) 289, 315
AsuC2I CCSGG 1 cut(s) 497
AsuHPI GGTGA 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 207
AvaII GGWCC 1 cut(s) 315
AvrII CCTAGG 1 cut(s) 169
BaeGI GKGCMC 1 cut(s) 306
BanI GGYRCC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 1 cut(s) 193
BciVI GTATCC 3 cut(s) 72, 230, 357
BcnI CCSGG 1 cut(s) 497
BfaI CTAG 1 cut(s) 170
BfuI GTATCC 3 cut(s) 72, 230, 357
BisI GCNGC 1 cut(s) 182
BlnI CCTAGG 1 cut(s) 169
BlsI GCNGC 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 497
Bme18I GGWCC 1 cut(s) 315
BmeT110I CYCGRG 1 cut(s) 207
BmgT120I GGNCC 2 cut(s) 289, 315
BmiI GGNNCC 1 cut(s) 155
BmrFI CCNGG 1 cut(s) 497
BpiI GAAGAC 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 497
BsaJI CCNNGG 2 cut(s) 169, 496
Bse3DI GCAATG 1 cut(s) 437
BseDI CCNNGG 2 cut(s) 169, 496
BseMI GCAATG 1 cut(s) 437
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 1 cut(s) 290
BshNI GGYRCC 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 477
BsiHKCI CYCGRG 1 cut(s) 207
BsiSI CCGG 1 cut(s) 496
BsnI GGCC 1 cut(s) 290
BsoBI CYCGRG 1 cut(s) 207
Bsp1286I GDGCHC 2 cut(s) 306, 477
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 2 cut(s) 331, 533
BspANI GGCC 1 cut(s) 290
BspLI GGNNCC 1 cut(s) 155
BspPI GGATC 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 437
BssECI CCNNGG 2 cut(s) 169, 496
BssMI GATC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 169
BstEII GGTNACC 1 cut(s) 202
BstKTI GATC 1 cut(s) 177
BstMBI GATC 1 cut(s) 174
BstNSI RCATGY 1 cut(s) 481
BstPI GGTNACC 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 495
BstSLI GKGCMC 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 174
BstXI CCANNNNNNTGG 1 cut(s) 299
BstYI RGATCY 1 cut(s) 174
BsuI GTATCC 3 cut(s) 72, 230, 357
BsuRI GGCC 1 cut(s) 290
Cfr13I GGNCC 2 cut(s) 289, 315
Csp6I GTAC 1 cut(s) 154
CspCI CAANNNNNGTGG 1 cut(s) 36
CviAII CATG 1 cut(s) 478
CviJI RGCY 1 cut(s) 290
CviKI_1 RGCY 1 cut(s) 290
CviQI GTAC 1 cut(s) 154
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
DraI TTTAAA 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 315
Eco88I CYCGRG 1 cut(s) 207
Eco91I GGTNACC 1 cut(s) 202
EcoO65I GGTNACC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 1 cut(s) 481
FatI CATG 1 cut(s) 477
FauI CCCGC 1 cut(s) 526
Fnu4HI GCNGC 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 182
FspBI CTAG 1 cut(s) 170
GluI GCNGC 1 cut(s) 182
HaeIII GGCC 1 cut(s) 290
HapII CCGG 1 cut(s) 496
Hin1II CATG 1 cut(s) 481
HpaII CCGG 1 cut(s) 496
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 1 cut(s) 236
Hpy8I GTNNAC 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 500
HpyCH4V TGCA 5 cut(s) 73, 181, 260, 284, 442
Hsp92II CATG 1 cut(s) 481
KpnI GGTACC 1 cut(s) 157
Kzo9I GATC 1 cut(s) 174
LpnPI CCDG 2 cut(s) 239, 509
Lsp1109I GCAGC 1 cut(s) 193
MaeI CTAG 1 cut(s) 170
MaeIII GTNAC 3 cut(s) 202, 211, 433
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 1 cut(s) 202
MfeI CAATTG 1 cut(s) 185
MflI RGATCY 1 cut(s) 174
MhlI GDGCHC 2 cut(s) 306, 477
MluCI AATT 7 cut(s) 124, 146, 185, 377, 399, 454, 549
MnlI CCTC 3 cut(s) 16, 127, 360
MseI TTAA 7 cut(s) 123, 360, 398, 407, 468, 513, 553
MslI CAYNNNNRTG 1 cut(s) 209
MspI CCGG 1 cut(s) 496
MspR9I CCNGG 1 cut(s) 497
MunI CAATTG 1 cut(s) 185
NciI CCSGG 1 cut(s) 497
NdeII GATC 1 cut(s) 174
NlaIII CATG 1 cut(s) 481
NlaIV GGNNCC 1 cut(s) 155
NmuCI GTSAC 2 cut(s) 202, 211
NspI RCATGY 1 cut(s) 481
OliI CACNNNNGTG 1 cut(s) 209
PciI ACATGT 1 cut(s) 477
PkrI GCNGC 1 cut(s) 183
PscI ACATGT 1 cut(s) 477
PshBI ATTAAT 2 cut(s) 398, 468
PspEI GGTNACC 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 155
PspPI GGNCC 2 cut(s) 289, 315
PsuI RGATCY 1 cut(s) 174
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 209
SaqAI TTAA 7 cut(s) 123, 360, 398, 407, 468, 513, 553
SatI GCNGC 1 cut(s) 182
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 2 cut(s) 289, 315
ScrFI CCNGG 1 cut(s) 497
SduI GDGCHC 2 cut(s) 306, 477
SetI ASST 4 cut(s) 138, 171, 204, 320
SinI GGWCC 1 cut(s) 315
SmiI ATTTAAAT 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 7 cut(s) 124, 146, 185, 377, 399, 454, 549
SsiI CCGC 2 cut(s) 331, 533
SspI AATATT 2 cut(s) 58, 429
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 495
StyI CCWWGG 1 cut(s) 169
SwaI ATTTAAAT 1 cut(s) 408
TasI AATT 7 cut(s) 124, 146, 185, 377, 399, 454, 549
Tru1I TTAA 7 cut(s) 123, 360, 398, 407, 468, 513, 553
Tru9I TTAA 7 cut(s) 123, 360, 398, 407, 468, 513, 553
TseFI GTSAC 2 cut(s) 202, 211
TseI GCWGC 1 cut(s) 181
Tsp45I GTSAC 2 cut(s) 202, 211
TspDTI ATGAA 1 cut(s) 359
TspGWI ACGGA 1 cut(s) 475
VpaK11BI GGWCC 1 cut(s) 315
VspI ATTAAT 2 cut(s) 398, 468
XapI RAATTY 3 cut(s) 146, 377, 549
XceI RCATGY 1 cut(s) 481
XmaJI CCTAGG 1 cut(s) 169
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.