Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000162

Physical Location & Seq

Genomic Coordinates Forward (+)

22001504 .. 22003575

Gene Structure 2072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G59790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGATTCGAGAAGAATGTCCCGACCCAGACAGATTAAATTTGAGGAAGGATGGTCCAACATTCAGAAAGGTATTACCAAGCTGATAAGGATTCTAGAAGGAGAGCCTGAACCAACATTTTATTTTAGTGAATGTTTTAAACTTTACACGATTATCTACGATATGTGTGTCCAGAGATCCGATTATTCACAGCAGCTTTATGAAAAGTATCGTAAAGTAATTGAAGATTATACTATCCAAACGGTGTTGCCGTCTTTAAGGGAGAAGCATGATGAAGATATGCTAAGAGAGCTTGTTAAGAGGTGGAATAACCATAAAATTATGGTCAAATGGTTAAGCAAGTTCTTCGTTTATATTGACCGTCACTTGGTTCGTCGGAGTAAGATTCCAATTCCATCACTAGATGAAGTTGGATTGACATGCTTTCTTGACCTGGTTTATTGTGAGATGCAGTCCACGGCCAAAGAAGTTGTAATAGCACTTATTCATAAAGAACGTGAGGGCGAACAGATAGATAGGGCACTAGTGAAGAACGTATTAGATATCTATGTGGAGAATGGGATGGGAACCTTGGAAAAATATGAAGAGGATTTTGAAAGCTTCATGCTTCAAGATACTGCTTCTTACTATTCTCGCAAGGCGTCAAGGTGGACCGAGGAGGATTCTTGTCCTGATTACATGATAAAGGTTGAGGAGTGTCTAAAGATGGAGAGGGAGAGAGTCACTCACTATCTCCATTCAATTACCGAACCCAAACTAGTTGAGAAAATACAAAACGAATTGTTGGTTATGGTTACAAAAAACCGCCTAGAAAATGAGCACTCAGGGTTTAGTGCATTGCTAAGAGATGACAAGAAGAATGATCTCTCTAGGATATACCGTCTTTATCTTCCAATCCCTAAGAGGTTGGGACGTGTTGCAGACTTATTCAAGAAGCATATTACTGAAGAGGGAAATGCCCTTATCAAACAAGCTGACGACAAAACTACTAATCAACTACTAATTGAGCTACACAATAAGTTCATTGTCTATGTCATCGAGTGTTTTCAAAACCACACCCTCTTCCATAAGGTTAGAGTTTTGTTCATGTGTGTCTATCTTTTCCAACAATATTATATCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000228 GO:0000793 GO:0000794 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009941 GO:0009987 GO:0010033 GO:0010087 GO:0010154 GO:0015630 GO:0019005 GO:0019899 GO:0022414 GO:0023052 GO:0031461 GO:0031625 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0099402 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Cullin Cullin_Nedd8

Protein Analysis

374

Amino Acids

44.92

Weight (kDa)

6.63

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin	PF00888	43 - 366	3.2e-71	Cullin alpha solenoid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca	FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica	MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica	Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis	pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis	RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata	RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora	Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa	Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha	Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana	Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	805
AclWI	GGATC	1 cut(s)	171
AcoI	YGGCCR	1 cut(s)	459
AcsI	RAATTY	1 cut(s)	38
AcuI	CTGAAG	1 cut(s)	966
AcyI	GRCGYC	1 cut(s)	641
AfiI	CCNNNNNNNGG	1 cut(s)	367
AflIII	ACRYGT	1 cut(s)	913
AgsI	TTSAA	6 cut(s)	224, 596, 611, 741, 931, 1049
AhlI	ACTAGT	2 cut(s)	523, 757
AjiI	CACGTC	1 cut(s)	914
AjnI	CCWGG	1 cut(s)	432
AluBI	AGCT	6 cut(s)	82, 196, 292, 600, 974, 1009
AluI	AGCT	6 cut(s)	82, 196, 292, 600, 974, 1009
Alw21I	GWGCWC	1 cut(s)	822
AlwI	GGATC	1 cut(s)	171
AoxI	GGCC	1 cut(s)	459
ApeKI	GCWGC	1 cut(s)	193
ApoI	RAATTY	1 cut(s)	38
AspS9I	GGNCC	2 cut(s)	54, 651
AvaII	GGWCC	2 cut(s)	54, 651
BaeGI	GKGCMC	1 cut(s)	523
Bbv12I	GWGCWC	1 cut(s)	822
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	4 cut(s)	45, 403, 556, 700
BceAI	ACGGC	2 cut(s)	235, 474
BcgI	CGANNNNNNTGC	2 cut(s)	328, 362
BciT130I	CCWGG	1 cut(s)	434
BcuI	ACTAGT	2 cut(s)	523, 757
BfaI	CTAG	6 cut(s)	95, 401, 524, 758, 809, 870
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	434
Bme18I	GGWCC	2 cut(s)	54, 651
BmgBI	CACGTC	1 cut(s)	914
BmgT120I	GGNCC	2 cut(s)	54, 651
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	1 cut(s)	438
BplI	GAGNNNNNCTC	2 cut(s)	709, 741
BsaHI	GRCGYC	1 cut(s)	641
BsaJI	CCNNGG	3 cut(s)	456, 570, 654
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	836
BseBI	CCWGG	1 cut(s)	434
BseDI	CCNNGG	3 cut(s)	456, 570, 654
BseGI	GGATG	2 cut(s)	56, 567
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMI	GCAATG	1 cut(s)	836
BseMII	CTCAG	1 cut(s)	837
BseRI	GAGGAG	2 cut(s)	671, 707
BseSI	GKGCMC	1 cut(s)	523
BseXI	GCAGC	1 cut(s)	205
BshFI	GGCC	1 cut(s)	461
BsiHKAI	GWGCWC	1 cut(s)	822
BslFI	GGGAC	2 cut(s)	4, 924
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmFI	GGGAC	2 cut(s)	4, 924
BsnI	GGCC	1 cut(s)	461
Bsp1286I	GDGCHC	2 cut(s)	523, 822
Bsp143I	GATC	2 cut(s)	176, 862
BspACI	CCGC	1 cut(s)	805
BspANI	GGCC	1 cut(s)	461
BspCNI	CTCAG	1 cut(s)	836
BspLI	GGNNCC	1 cut(s)	568
BspPI	GGATC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	836
BssECI	CCNNGG	3 cut(s)	456, 570, 654
BssMI	GATC	2 cut(s)	176, 862
BssNI	GRCGYC	1 cut(s)	641
BssT1I	CCWWGG	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	3 cut(s)	244, 362, 881
Bst6I	CTCTTC	3 cut(s)	579, 942, 1067
BstACI	GRCGYC	1 cut(s)	641
BstDEI	CTNAG	4 cut(s)	284, 823, 842, 900
BstDSI	CCRYGG	1 cut(s)	456
BstF5I	GGATG	2 cut(s)	56, 567
BstKTI	GATC	2 cut(s)	179, 865
BstMBI	GATC	2 cut(s)	176, 862
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstNI	CCWGG	1 cut(s)	434
BstNSI	RCATGY	1 cut(s)	423
BstSCI	CCNGG	1 cut(s)	432
BstSLI	GKGCMC	1 cut(s)	523
BstV1I	GCAGC	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	461
BtgI	CCRYGG	1 cut(s)	456
BtrI	CACGTC	1 cut(s)	914
BtsCI	GGATG	2 cut(s)	56, 567
Cfr13I	GGNCC	2 cut(s)	54, 651
CseI	GACGC	1 cut(s)	630
CsiI	ACCWGGT	1 cut(s)	432
CviAII	CATG	5 cut(s)	269, 420, 604, 679, 1087
CviJI	RGCY	8 cut(s)	82, 106, 196, 292, 461, 600, 974, 1009
CviKI_1	RGCY	8 cut(s)	82, 106, 196, 292, 461, 600, 974, 1009
DdeI	CTNAG	4 cut(s)	284, 823, 842, 900
DpnI	GATC	2 cut(s)	178, 864
DpnII	GATC	2 cut(s)	176, 862
DraI	TTTAAA	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	459
Eam1104I	CTCTTC	3 cut(s)	579, 942, 1067
EarI	CTCTTC	3 cut(s)	579, 942, 1067
Eco130I	CCWWGG	1 cut(s)	570
Eco32I	GATATC	1 cut(s)	544
Eco47I	GGWCC	2 cut(s)	54, 651
Eco57I	CTGAAG	1 cut(s)	966
EcoRII	CCWGG	1 cut(s)	432
EcoRV	GATATC	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	5 cut(s)	272, 423, 607, 682, 1090
FaqI	GGGAC	2 cut(s)	4, 924
FatI	CATG	5 cut(s)	268, 419, 603, 678, 1086
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	2 cut(s)	63, 574
Fsp4HI	GCNGC	1 cut(s)	194
FspBI	CTAG	6 cut(s)	95, 401, 524, 758, 809, 870
GluI	GCNGC	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	461
HgaI	GACGC	1 cut(s)	630
Hin1I	GRCGYC	1 cut(s)	641
Hin1II	CATG	5 cut(s)	272, 423, 607, 682, 1090
HindIII	AAGCTT	1 cut(s)	598
HinfI	GANTC	5 cut(s)	5, 91, 385, 662, 720
Hpy166II	GTNNAC	2 cut(s)	456, 651
Hpy188I	TCNGA	3 cut(s)	66, 181, 378
Hpy188III	TCNNGA	8 cut(s)	9, 21, 95, 172, 428, 611, 671, 931
Hpy8I	GTNNAC	2 cut(s)	456, 651
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	2 cut(s)	41, 92
HpyCH4III	ACNGT	3 cut(s)	244, 362, 881
HpyCH4IV	ACGT	3 cut(s)	496, 534, 913
HpyCH4V	TGCA	3 cut(s)	451, 836, 920
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpyF3I	CTNAG	4 cut(s)	284, 823, 842, 900
HpySE526I	ACGT	3 cut(s)	496, 534, 913
Hsp92I	GRCGYC	1 cut(s)	641
Hsp92II	CATG	5 cut(s)	272, 423, 607, 682, 1090
Kzo9I	GATC	2 cut(s)	176, 862
LpnPI	CCDG	7 cut(s)	40, 120, 185, 419, 446, 684, 810
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	1 cut(s)	438
MabI	ACCWGGT	1 cut(s)	432
MaeI	CTAG	6 cut(s)	95, 401, 524, 758, 809, 870
MaeII	ACGT	3 cut(s)	496, 534, 913
MaeIII	GTNAC	3 cut(s)	362, 721, 793
MalI	GATC	2 cut(s)	178, 864
MboI	GATC	2 cut(s)	176, 862
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	2 cut(s)	523, 822
MluCI	AATT	7 cut(s)	38, 219, 318, 390, 741, 779, 1002
MlyI	GAGTC	1 cut(s)	729
MmeI	TCCRAC	3 cut(s)	81, 356, 391
MseI	TTAA	5 cut(s)	36, 138, 257, 297, 335
MspR9I	CCNGG	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	1 cut(s)	289
NdeII	GATC	2 cut(s)	176, 862
NlaIII	CATG	5 cut(s)	272, 423, 607, 682, 1090
NlaIV	GGNNCC	1 cut(s)	568
NmuCI	GTSAC	2 cut(s)	362, 721
NspI	RCATGY	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	248
PfeI	GAWTC	4 cut(s)	5, 91, 385, 662
PkrI	GCNGC	1 cut(s)	195
PleI	GAGTC	1 cut(s)	728
PpsI	GAGTC	1 cut(s)	728
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	2 cut(s)	54, 651
PsuI	RGATCY	1 cut(s)	176
SaqAI	TTAA	5 cut(s)	36, 138, 257, 297, 335
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	2 cut(s)	176, 862
Sau96I	GGNCC	2 cut(s)	54, 651
SchI	GAGTC	1 cut(s)	729
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	2 cut(s)	523, 822
SexAI	ACCWGGT	1 cut(s)	432
SfaNI	GCATC	1 cut(s)	438
SinI	GGWCC	2 cut(s)	54, 651
SpeI	ACTAGT	2 cut(s)	523, 757
Sse9I	AATT	7 cut(s)	38, 219, 318, 390, 741, 779, 1002
SsiI	CCGC	1 cut(s)	805
SspI	AATATT	1 cut(s)	1112
SspMI	CTAG	6 cut(s)	95, 401, 524, 758, 809, 870
StyD4I	CCNGG	1 cut(s)	432
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	3 cut(s)	244, 362, 881
TaiI	ACGT	3 cut(s)	499, 537, 916
TaqI	TCGA	3 cut(s)	8, 1038, 1119
TaqII	GACCGA	1 cut(s)	668
TasI	AATT	7 cut(s)	38, 219, 318, 390, 741, 779, 1002
TfiI	GAWTC	4 cut(s)	5, 91, 385, 662
Tru1I	TTAA	5 cut(s)	36, 138, 257, 297, 335
Tru9I	TTAA	5 cut(s)	36, 138, 257, 297, 335
TseFI	GTSAC	2 cut(s)	362, 721
TseI	GCWGC	1 cut(s)	193
Tsp45I	GTSAC	2 cut(s)	362, 721
TspDTI	ATGAA	8 cut(s)	216, 288, 420, 476, 592, 597, 1012, 1075
VpaK11BI	GGWCC	2 cut(s)	54, 651
XapI	RAATTY	1 cut(s)	38
XbaI	TCTAGA	1 cut(s)	94
XceI	RCATGY	1 cut(s)	423
XspI	CTAG	6 cut(s)	95, 401, 524, 758, 809, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.