Rorug07G0084600

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
6661687 .. 6663628
1942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0084600.1

Sequence Viewer

Length: 387 bp
ATGACGAGCAACAACAACGAGAGTGTCGCCGCCGGTGAGCCACCGGTTCCACTGATGAACATCGTCGTTTCTGCACCACCGACCGGCACCGCCGCTACAGATCACTCGGTTTGGAGAGTTGAAATTAAACCAGAAAATCGAGACAGGTGCTGTATGAGAGCACTGGCCGTGGCATTTTTAATTGTCATAGCTTGTCTGGCGGTGTACATGATTTTATATGCTACCCTTAATATCTCTAAGCTGCCGGCTTACATTCTGTACGGTGTTCTTATGGTTCTCGCACTTGGAAGTGCACTGAGACTAGCTTTCTTCTATGAACAGATATTGACAGCGGCCACAGATGTGCAAAAGGTACGTGGAAAATCAGATGCAAGTCATGCAACCTGA

Protein Analysis

128

Amino Acids

13.8

Weight (kDa)

7.72

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 86
AciI CCGC 5 cut(s) 30, 90, 93, 200, 332
AcoI YGGCCR 2 cut(s) 165, 333
AfaI GTAC 3 cut(s) 206, 260, 354
AfiI CCNNNNNNNGG 1 cut(s) 83
AgeI ACCGGT 1 cut(s) 43
AgsI TTSAA 1 cut(s) 122
AleI CACNNNNGTG 1 cut(s) 341
AluBI AGCT 3 cut(s) 191, 241, 305
AluI AGCT 3 cut(s) 191, 241, 305
Alw21I GWGCWC 2 cut(s) 163, 295
Alw26I GTCTC 2 cut(s) 135, 292
Alw44I GTGCAC 1 cut(s) 291
AlwNI CAGNNNCTG 1 cut(s) 150
AoxI GGCC 2 cut(s) 165, 333
ApaLI GTGCAC 1 cut(s) 291
ApeKI GCWGC 1 cut(s) 241
AsiGI ACCGGT 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 47
BaeGI GKGCMC 1 cut(s) 295
BanI GGYRCC 1 cut(s) 86
Bbv12I GWGCWC 2 cut(s) 163, 295
BbvI GCAGC 1 cut(s) 228
BceAI ACGGC 1 cut(s) 152
BcgI CGANNNNNNTGC 2 cut(s) 129, 163
BcoDI GTCTC 2 cut(s) 135, 292
BfaI CTAG 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 96
BisI GCNGC 4 cut(s) 30, 93, 242, 333
BlsI GCNGC 4 cut(s) 31, 94, 243, 334
BmiI GGNNCC 2 cut(s) 48, 88
BmsI GCATC 1 cut(s) 358
BsaAI YACGTR 1 cut(s) 356
BsaBI GATNNNNATC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse118I RCCGGY 4 cut(s) 32, 43, 83, 244
Bse1I ACTGG 1 cut(s) 168
Bse8I GATNNNNATC 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 168
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 1 cut(s) 168
BseSI GKGCMC 1 cut(s) 295
BseXI GCAGC 1 cut(s) 228
BsgI GTGCAG 1 cut(s) 57
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 2 cut(s) 167, 335
BshNI GGYRCC 1 cut(s) 86
BshTI ACCGGT 1 cut(s) 43
BsiEI CGRYCG 1 cut(s) 84
BsiHKAI GWGCWC 2 cut(s) 163, 295
BsiSI CCGG 4 cut(s) 33, 44, 84, 245
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 2 cut(s) 135, 292
BsnI GGCC 2 cut(s) 167, 335
Bsp1286I GDGCHC 2 cut(s) 163, 295
Bsp1407I TGTACA 1 cut(s) 204
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 5 cut(s) 30, 90, 93, 200, 332
BspANI GGCC 2 cut(s) 167, 335
BspCNI CTCAG 1 cut(s) 288
BspLI GGNNCC 2 cut(s) 48, 88
BspT107I GGYRCC 1 cut(s) 86
BsrFI RCCGGY 4 cut(s) 32, 43, 83, 244
BsrGI TGTACA 1 cut(s) 204
BsrI ACTGG 1 cut(s) 168
BssAI RCCGGY 4 cut(s) 32, 43, 83, 244
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 263
BstAPI GCANNNNNTGC 1 cut(s) 377
BstAUI TGTACA 1 cut(s) 204
BstBAI YACGTR 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 2 cut(s) 237, 296
BstDSI CCRYGG 1 cut(s) 168
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 2 cut(s) 135, 292
BstMBI GATC 1 cut(s) 100
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 2 cut(s) 197, 377
BstSFI CTRYAG 1 cut(s) 96
BstSLI GKGCMC 1 cut(s) 295
BstV1I GCAGC 1 cut(s) 228
BsuRI GGCC 2 cut(s) 167, 335
BtgI CCRYGG 1 cut(s) 168
BtsIMutI CAGTG 3 cut(s) 50, 161, 293
Cac8I GCNNGC 1 cut(s) 246
CaiI CAGNNNCTG 1 cut(s) 150
Cfr10I RCCGGY 4 cut(s) 32, 43, 83, 244
Csp6I GTAC 3 cut(s) 205, 259, 353
CspAI ACCGGT 1 cut(s) 43
CviAII CATG 2 cut(s) 208, 377
CviJI RGCY 7 cut(s) 40, 167, 191, 241, 248, 305, 335
CviKI_1 RGCY 7 cut(s) 40, 167, 191, 241, 248, 305, 335
CviQI GTAC 3 cut(s) 205, 259, 353
DdeI CTNAG 2 cut(s) 237, 296
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
EaeI YGGCCR 2 cut(s) 165, 333
FaeI CATG 2 cut(s) 211, 380
FaiI YATR 8 cut(s) 155, 188, 209, 217, 219, 272, 315, 378
FatI CATG 2 cut(s) 207, 376
Fnu4HI GCNGC 4 cut(s) 30, 93, 242, 333
Fsp4HI GCNGC 4 cut(s) 30, 93, 242, 333
FspBI CTAG 1 cut(s) 302
GluI GCNGC 4 cut(s) 30, 93, 242, 333
HaeIII GGCC 2 cut(s) 167, 335
HapII CCGG 4 cut(s) 33, 44, 84, 245
Hin1II CATG 2 cut(s) 211, 380
HpaII CCGG 4 cut(s) 33, 44, 84, 245
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 2 cut(s) 205, 293
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 2 cut(s) 205, 293
Hpy99I CGWCG 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 5 cut(s) 74, 293, 346, 371, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 377
HpyF3I CTNAG 2 cut(s) 237, 296
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 2 cut(s) 211, 380
KroI GCCGGC 1 cut(s) 244
KroNI GCCGGC 1 cut(s) 246
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 8 cut(s) 46, 57, 97, 130, 144, 149, 182, 258
Lsp1109I GCAGC 1 cut(s) 228
LweI GCATC 1 cut(s) 358
MaeI CTAG 1 cut(s) 302
MaeII ACGT 1 cut(s) 355
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 1 cut(s) 301
MhlI GDGCHC 2 cut(s) 163, 295
MluCI AATT 2 cut(s) 123, 180
MroNI GCCGGC 1 cut(s) 244
MseI TTAA 3 cut(s) 126, 179, 228
MslI CAYNNNNRTG 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 4 cut(s) 33, 44, 84, 245
MwoI GCNNNNNNNGC 2 cut(s) 197, 377
NaeI GCCGGC 1 cut(s) 246
NdeII GATC 1 cut(s) 100
NgoMIV GCCGGC 1 cut(s) 244
NlaIII CATG 2 cut(s) 211, 380
NlaIV GGNNCC 2 cut(s) 48, 88
OliI CACNNNNGTG 1 cut(s) 341
PdiI GCCGGC 1 cut(s) 246
PinAI ACCGGT 1 cut(s) 43
PkrI GCNGC 4 cut(s) 31, 94, 243, 334
Ppu21I YACGTR 1 cut(s) 356
PspN4I GGNNCC 2 cut(s) 48, 88
PstNI CAGNNNCTG 1 cut(s) 150
RsaI GTAC 3 cut(s) 206, 260, 354
RsaNI GTAC 3 cut(s) 205, 259, 353
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 3 cut(s) 126, 179, 228
SatI GCNGC 4 cut(s) 30, 93, 242, 333
Sau3AI GATC 1 cut(s) 100
SduI GDGCHC 2 cut(s) 163, 295
SetI ASST 7 cut(s) 149, 193, 243, 307, 354, 358, 386
SfaNI GCATC 1 cut(s) 358
SfcI CTRYAG 1 cut(s) 96
SgrAI CRCCGGYG 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 341
Sse9I AATT 2 cut(s) 123, 180
SsiI CCGC 5 cut(s) 30, 90, 93, 200, 332
SspMI CTAG 1 cut(s) 302
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 1 cut(s) 358
TaqI TCGA 1 cut(s) 139
TasI AATT 2 cut(s) 123, 180
TatI WGTACW 1 cut(s) 204
TauI GCSGC 3 cut(s) 32, 95, 335
Tru1I TTAA 3 cut(s) 126, 179, 228
Tru9I TTAA 3 cut(s) 126, 179, 228
TscAI CASTG 3 cut(s) 57, 168, 300
TseI GCWGC 1 cut(s) 241
TspDTI ATGAA 2 cut(s) 71, 330
TspRI CASTG 3 cut(s) 57, 168, 300
VneI GTGCAC 1 cut(s) 291
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.