Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000162

Physical Location & Seq

Genomic Coordinates Reverse (-)

20081216 .. 20084177

Gene Structure 2962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G018540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGATGTCTACATAGAGGATCTTGAAGCATGCTTGCTAAAAGATACTGGGGAATACTATTCTCAAAAAGCATCTAGTTGGATTGGGGAGGAATATTCTTATGCAGATTACATGGTGAAAGCTGAGGAGTGCTTGAGAAAGGAGAGGGAAAGTGCTTCTCATTACCTGCCTCCAAGCAGTGAGCAGAAGTTGGTGCGCACAGTGCAACATGAATTGTTTGAACCTCTTGCTGATGTATTAGTTAGACAAAAAGTTACGGCTGAATTGGCACCCTTGTTTCAACACATTGAAGATTCTGCAAGAAACCAGGCTTCTTCCATTGGAGCTGGGATGCCAGCACAGGTTCTTATCACAGATTTAGTTGAGCTGCATGATAAGTATACAGCATATGTCAATGATTGCTTTAGAAACTACTATCATTTTCACAAGGCTCTGAATGAGGCTTTTGAGGTATTTTGCAATAAAGTTGTTGCTGGAAGCTCGTGTGCTGAATTGCTTGCTGCATTCTGTGATGATCTTCTTAAAAAGGGTGGGTGTGAGAAATTGAGTGGTGATCAGGGCATAGAAGAAACACTTGAGAAGGCTATAAAAACGTTGCTTCCTTACATCAGTGACAAGGACCATTTTGCAGAATTCTACAGAAAAAAACTTGCTCGCCGGCTACTGTTTGATCGGAGTGCTAACAAGGACCATGAAAAAAGCGTTATAACAAAGATGAAACAGCAGTGTGGTGGACAGTTTACCTCAAAGATGGAGGGAATGGTCACTGATTGGACCTTAGCTCGGGACACTCAGAATAGCTTTGAGGAATATCTTCGTTGTAACCAAAATATAAATCCTGGAATGGATTTGGCAGTCACTGTACTTACAACTGGTTCTTGGCCAAGTTATGAATCGTCCAATCTGAACCTTCCTGCAGAGATGAGGATATGTGTTGAAATTTTCAAGGGATACTATGAAACTAAAACGAAACACAGAAAACTTACATGGGTTTACTCATTGGGCAGTTGCCACATTATAGGCAAGTTTGAGCCAAAAACAATTGAATTGGTTGTGTCAACCTATCAAGCAGCTCTCTTGCTACTCTTCAATACAGCAGATAGATTGAGCTATTCTGAAATCTCATGTCAGTTAAATCTTCCCGAGAATGCCTTGGTTAGAATTCTTCATTCACTGTCATGCGGCAAGTACAAGGTCCTCATTAAGGAGCCAAATACAAAGATTATCTCCCCAAATGACACCTTTGAGTTCAACTCTATGTTCACTGACAGAATGATAAGAATTAAGATTCCTCTCCCACCTGTGGATCATGAAAGGAAGGAGGTAATGAAAGATGTGGATAAAGACCGGCGATATGCTATTGATGCTGCAATCGTGAGGATTATGAAGATTATAGAATGTGTTGAGCAGTTGAGACATATGTTCAAGCCTGACATCAAAACAATTAAGAAGCGCATTGAAGATCTTATTACTCGTGACTACTTGGAGAGAGACAAGGAAAACCAAAAAGTGTATAGGTATGTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000228 GO:0000793 GO:0000794 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009524 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010154 GO:0015630 GO:0019899 GO:0022414 GO:0023052 GO:0031461 GO:0031625 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0099402 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Cullin Cullin_Nedd8

Protein Analysis

509

Amino Acids

58.77

Weight (kDa)

6.28

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin	PF00888	3 - 84	1.4e-14	Cullin alpha solenoid domain
Cullin	PF00888	88 - 264	4.7e-52	Cullin alpha solenoid domain
Cullin_AB	PF26557	288 - 421	3.3e-42	Cullin alpha+beta domain
Cullin_Nedd8	PF10557	449 - 501	6.4e-14	Cullin protein neddylation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca	FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica	MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica	Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis	pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis	RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata	RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora	Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa	Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha	Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana	Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	707
Acc16I	TGCGCA	1 cut(s)	197
Acc36I	ACCTGC	1 cut(s)	174
AccB1I	GGYRCC	1 cut(s)	268
AccI	GTMKAC	2 cut(s)	9, 380
AciI	CCGC	1 cut(s)	1182
AclI	AACGTT	1 cut(s)	593
AclWI	GGATC	2 cut(s)	27, 1314
AcoI	YGGCCR	1 cut(s)	881
AcsI	RAATTY	3 cut(s)	632, 939, 1161
AfaI	GTAC	2 cut(s)	864, 1190
AfiI	CCNNNNNNNGG	3 cut(s)	783, 1204, 1303
AjnI	CCWGG	2 cut(s)	306, 838
AluBI	AGCT	8 cut(s)	122, 326, 367, 480, 782, 801, 1073, 1110
AluI	AGCT	8 cut(s)	122, 326, 367, 480, 782, 801, 1073, 1110
Alw26I	GTCTC	2 cut(s)	1408, 1485
AlwI	GGATC	2 cut(s)	27, 1314
AlwNI	CAGNNNCTG	1 cut(s)	860
Ama87I	CYCGRG	2 cut(s)	783, 1142
AoxI	GGCC	1 cut(s)	881
ApeKI	GCWGC	4 cut(s)	367, 500, 1070, 1367
ApoI	RAATTY	3 cut(s)	632, 939, 1161
Asp700I	GAANNNNTTC	1 cut(s)	813
AspLEI	GCGC	2 cut(s)	198, 1455
AspS9I	GGNCC	4 cut(s)	619, 688, 774, 1195
AsuHPI	GGTGA	2 cut(s)	127, 563
AvaI	CYCGRG	2 cut(s)	783, 1142
AvaII	GGWCC	4 cut(s)	619, 688, 774, 1195
BalI	TGGCCA	1 cut(s)	883
BanI	GGYRCC	1 cut(s)	268
BauI	CACGAG	2 cut(s)	481, 1473
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	4 cut(s)	354, 487, 1082, 1354
BccI	CCATC	1 cut(s)	745
BceAI	ACGGC	1 cut(s)	273
BciT130I	CCWGG	2 cut(s)	308, 840
BciVI	GTATCC	1 cut(s)	944
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	2 cut(s)	1408, 1485
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	2 cut(s)	637, 915
BfuAI	ACCTGC	1 cut(s)	174
BfuI	GTATCC	1 cut(s)	944
BglII	AGATCT	1 cut(s)	1462
BisI	GCNGC	5 cut(s)	368, 501, 1071, 1183, 1368
BlsI	GCNGC	5 cut(s)	369, 502, 1072, 1184, 1369
Bme1390I	CCNGG	2 cut(s)	308, 840
Bme18I	GGWCC	4 cut(s)	619, 688, 774, 1195
BmeT110I	CYCGRG	2 cut(s)	783, 1142
BmgT120I	GGNCC	4 cut(s)	619, 688, 774, 1195
BmiI	GGNNCC	2 cut(s)	270, 1209
BmrFI	CCNGG	2 cut(s)	308, 840
BmrI	ACTGGG	1 cut(s)	57
BmsI	GCATC	3 cut(s)	80, 321, 1354
BmuI	ACTGGG	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	1238, 1270
Bpu10I	CCTNAGC	2 cut(s)	123, 778
BpuEI	CTTGAG	2 cut(s)	154, 596
BsaJI	CCNNGG	1 cut(s)	1152
Bsc4I	CCNNNNNNNGG	3 cut(s)	783, 1204, 1303
Bse118I	RCCGGY	2 cut(s)	657, 1347
Bse1I	ACTGG	2 cut(s)	52, 877
BseBI	CCWGG	2 cut(s)	308, 840
BseDI	CCNNGG	1 cut(s)	1152
BseGI	GGATG	2 cut(s)	10, 336
BseLI	CCNNNNNNNGG	3 cut(s)	783, 1204, 1303
BseMII	CTCAG	2 cut(s)	114, 806
BseNI	ACTGG	2 cut(s)	52, 877
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	4 cut(s)	354, 487, 1082, 1354
BseYI	CCCAGC	1 cut(s)	326
BshFI	GGCC	1 cut(s)	883
BshNI	GGYRCC	1 cut(s)	268
BsiHKCI	CYCGRG	2 cut(s)	783, 1142
BsiSI	CCGG	2 cut(s)	658, 1348
BslFI	GGGAC	1 cut(s)	800
BslI	CCNNNNNNNGG	3 cut(s)	783, 1204, 1303
BsmAI	GTCTC	2 cut(s)	1408, 1485
BsmFI	GGGAC	1 cut(s)	800
BsmI	GAATGC	2 cut(s)	503, 1153
BsnI	GGCC	1 cut(s)	883
BsoBI	CYCGRG	2 cut(s)	783, 1142
Bsp143I	GATC	6 cut(s)	19, 514, 553, 670, 1306, 1462
BspACI	CCGC	1 cut(s)	1182
BspANI	GGCC	1 cut(s)	883
BspCNI	CTCAG	2 cut(s)	115, 805
BspHI	TCATGA	1 cut(s)	1309
BspLI	GGNNCC	2 cut(s)	270, 1209
BspMAI	CTGCAG	1 cut(s)	919
BspMI	ACCTGC	1 cut(s)	174
BspPI	GGATC	2 cut(s)	27, 1314
BspT107I	GGYRCC	1 cut(s)	268
BsrFI	RCCGGY	2 cut(s)	657, 1347
BsrI	ACTGG	2 cut(s)	52, 877
BssAI	RCCGGY	2 cut(s)	657, 1347
BssECI	CCNNGG	1 cut(s)	1152
BssMI	GATC	6 cut(s)	19, 514, 553, 670, 1306, 1462
BssNAI	GTATAC	1 cut(s)	381
BssSI	CACGAG	2 cut(s)	481, 1473
BssT1I	CCWWGG	1 cut(s)	1152
Bst1107I	GTATAC	1 cut(s)	381
Bst2BI	CACGAG	2 cut(s)	481, 1473
Bst2UI	CCWGG	2 cut(s)	308, 840
Bst4CI	ACNGT	5 cut(s)	202, 666, 738, 862, 1176
Bst6I	CTCTTC	1 cut(s)	1091
BstC8I	GCNNGC	6 cut(s)	31, 35, 336, 498, 655, 659
BstDEI	CTNAG	3 cut(s)	123, 778, 792
BstENI	CCTNNNNNAGG	1 cut(s)	1202
BstF5I	GGATG	2 cut(s)	10, 336
BstHHI	GCGC	2 cut(s)	198, 1455
BstKTI	GATC	6 cut(s)	22, 517, 556, 673, 1309, 1465
BstMAI	GTCTC	2 cut(s)	1408, 1485
BstMBI	GATC	6 cut(s)	19, 514, 553, 670, 1306, 1462
BstMWI	GCNNNNNNNGC	3 cut(s)	202, 266, 1364
BstNI	CCWGG	2 cut(s)	308, 840
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	306, 838
BstSFI	CTRYAG	2 cut(s)	637, 915
BstV1I	GCAGC	4 cut(s)	354, 487, 1082, 1354
BstX2I	RGATCY	2 cut(s)	19, 1462
BstYI	RGATCY	2 cut(s)	19, 1462
BstZ17I	GTATAC	1 cut(s)	381
BsuI	GTATCC	1 cut(s)	944
BsuRI	GGCC	1 cut(s)	883
BtsCI	GGATG	2 cut(s)	10, 336
BtsI	GCAGTG	2 cut(s)	184, 731
BtsIMutI	CAGTG	8 cut(s)	184, 207, 616, 731, 765, 858, 1172, 1263
BveI	ACCTGC	1 cut(s)	174
Cac8I	GCNNGC	6 cut(s)	31, 35, 336, 498, 655, 659
CaiI	CAGNNNCTG	1 cut(s)	860
CciI	TCATGA	1 cut(s)	1309
CfoI	GCGC	2 cut(s)	198, 1455
Cfr10I	RCCGGY	2 cut(s)	657, 1347
Cfr13I	GGNCC	4 cut(s)	619, 688, 774, 1195
Csp6I	GTAC	2 cut(s)	863, 1189
CviAII	CATG	9 cut(s)	30, 112, 209, 371, 692, 987, 1125, 1179, 1310
CviQI	GTAC	2 cut(s)	863, 1189
DdeI	CTNAG	3 cut(s)	123, 778, 792
DpnI	GATC	6 cut(s)	21, 516, 555, 672, 1308, 1464
DpnII	GATC	6 cut(s)	19, 514, 553, 670, 1306, 1462
EaeI	YGGCCR	1 cut(s)	881
Eam1104I	CTCTTC	1 cut(s)	1091
EarI	CTCTTC	1 cut(s)	1091
Eco130I	CCWWGG	1 cut(s)	1152
Eco47I	GGWCC	4 cut(s)	619, 688, 774, 1195
Eco88I	CYCGRG	2 cut(s)	783, 1142
EcoNI	CCTNNNNNAGG	1 cut(s)	1202
EcoO109I	RGGNCCY	1 cut(s)	1195
EcoRI	GAATTC	2 cut(s)	632, 1161
EcoRII	CCWGG	2 cut(s)	306, 838
EcoT14I	CCWWGG	1 cut(s)	1152
ErhI	CCWWGG	1 cut(s)	1152
FaeI	CATG	9 cut(s)	33, 115, 212, 374, 695, 990, 1128, 1182, 1313
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FaqI	GGGAC	1 cut(s)	800
FatI	CATG	9 cut(s)	29, 111, 208, 370, 691, 986, 1124, 1178, 1309
FauNDI	CATATG	2 cut(s)	388, 1419
FbaI	TGATCA	1 cut(s)	553
FblI	GTMKAC	2 cut(s)	9, 380
Fnu4HI	GCNGC	5 cut(s)	368, 501, 1071, 1183, 1368
FokI	GGATG	2 cut(s)	17, 343
Fsp4HI	GCNGC	5 cut(s)	368, 501, 1071, 1183, 1368
FspAI	RTGCGCAY	1 cut(s)	197
FspBI	CTAG	1 cut(s)	75
FspI	TGCGCA	1 cut(s)	197
GlaI	GCGC	2 cut(s)	197, 1454
GluI	GCNGC	5 cut(s)	368, 501, 1071, 1183, 1368
GsaI	CCCAGC	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	883
HapII	CCGG	2 cut(s)	658, 1348
HhaI	GCGC	2 cut(s)	198, 1455
Hin1II	CATG	9 cut(s)	33, 115, 212, 374, 695, 990, 1128, 1182, 1313
Hin6I	GCGC	2 cut(s)	196, 1453
HinP1I	GCGC	2 cut(s)	196, 1453
HincII	GTYRAC	1 cut(s)	1059
HindII	GTYRAC	1 cut(s)	1059
HinfI	GANTC	3 cut(s)	293, 893, 1288
HpaII	CCGG	2 cut(s)	658, 1348
HphI	GGTGA	2 cut(s)	127, 563
Hpy166II	GTNNAC	7 cut(s)	10, 381, 734, 741, 994, 1059, 1263
Hpy188I	TCNGA	5 cut(s)	435, 675, 795, 906, 1117
Hpy188III	TCNNGA	6 cut(s)	23, 785, 1142, 1310, 1375, 1475
Hpy8I	GTNNAC	7 cut(s)	10, 381, 734, 741, 994, 1059, 1263
HpyAV	CCTTC	3 cut(s)	574, 920, 1312
HpyCH4III	ACNGT	5 cut(s)	202, 666, 738, 862, 1176
HpyCH4IV	ACGT	1 cut(s)	593
HpyCH4V	TGCA	9 cut(s)	104, 205, 299, 370, 459, 503, 629, 917, 1370
HpyF10VI	GCNNNNNNNGC	3 cut(s)	202, 266, 1364
HpyF3I	CTNAG	3 cut(s)	123, 778, 792
HpySE526I	ACGT	1 cut(s)	593
Hsp92II	CATG	9 cut(s)	33, 115, 212, 374, 695, 990, 1128, 1182, 1313
HspAI	GCGC	2 cut(s)	196, 1453
KroI	GCCGGC	1 cut(s)	657
KroNI	GCCGGC	1 cut(s)	659
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	6 cut(s)	19, 514, 553, 670, 1306, 1462
LmnI	GCTCC	2 cut(s)	323, 1207
Lsp1109I	GCAGC	4 cut(s)	354, 487, 1082, 1354
LweI	GCATC	3 cut(s)	80, 321, 1354
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	593
MaeIII	GTNAC	6 cut(s)	253, 611, 763, 821, 856, 1475
MalI	GATC	6 cut(s)	21, 516, 555, 672, 1308, 1464
MboI	GATC	6 cut(s)	19, 514, 553, 670, 1306, 1462
MfeI	CAATTG	1 cut(s)	1041
MflI	RGATCY	2 cut(s)	19, 1462
MlsI	TGGCCA	1 cut(s)	883
MluNI	TGGCCA	1 cut(s)	883
MmeI	TCCRAC	1 cut(s)	59
Mox20I	TGGCCA	1 cut(s)	883
MroNI	GCCGGC	1 cut(s)	657
MroXI	GAANNNNTTC	1 cut(s)	813
MscI	TGGCCA	1 cut(s)	883
MseI	TTAA	5 cut(s)	522, 1133, 1203, 1284, 1446
MslI	CAYNNNNRTG	1 cut(s)	1177
Msp20I	TGGCCA	1 cut(s)	883
MspI	CCGG	2 cut(s)	658, 1348
MspR9I	CCNGG	2 cut(s)	308, 840
MunI	CAATTG	1 cut(s)	1041
Mva1269I	GAATGC	2 cut(s)	503, 1153
MvaI	CCWGG	2 cut(s)	308, 840
MwoI	GCNNNNNNNGC	3 cut(s)	202, 266, 1364
NaeI	GCCGGC	1 cut(s)	659
NdeI	CATATG	2 cut(s)	388, 1419
NdeII	GATC	6 cut(s)	19, 514, 553, 670, 1306, 1462
NgoMIV	GCCGGC	1 cut(s)	657
NlaIII	CATG	9 cut(s)	33, 115, 212, 374, 695, 990, 1128, 1182, 1313
NlaIV	GGNNCC	2 cut(s)	270, 1209
NmuCI	GTSAC	4 cut(s)	611, 763, 856, 1475
NsbI	TGCGCA	1 cut(s)	197
NspI	RCATGY	1 cut(s)	33
PaeI	GCATGC	1 cut(s)	33
PagI	TCATGA	1 cut(s)	1309
PctI	GAATGC	2 cut(s)	503, 1153
PdiI	GCCGGC	1 cut(s)	659
PdmI	GAANNNNTTC	1 cut(s)	813
PfeI	GAWTC	3 cut(s)	293, 893, 1288
PfoI	TCCNGGA	1 cut(s)	838
PkrI	GCNGC	5 cut(s)	369, 502, 1072, 1184, 1369
PpuMI	RGGWCCY	1 cut(s)	1195
PsiI	TTATAA	1 cut(s)	707
Psp1406I	AACGTT	1 cut(s)	593
Psp5II	RGGWCCY	1 cut(s)	1195
Psp6I	CCWGG	2 cut(s)	306, 838
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	2 cut(s)	306, 838
PspN4I	GGNNCC	2 cut(s)	270, 1209
PspPI	GGNCC	4 cut(s)	619, 688, 774, 1195
PspPPI	RGGWCCY	1 cut(s)	1195
PstI	CTGCAG	1 cut(s)	919
PstNI	CAGNNNCTG	1 cut(s)	860
PsuI	RGATCY	2 cut(s)	19, 1462
RsaI	GTAC	2 cut(s)	864, 1190
RsaNI	GTAC	2 cut(s)	863, 1189
RseI	CAYNNNNRTG	1 cut(s)	1177
SaqAI	TTAA	5 cut(s)	522, 1133, 1203, 1284, 1446
SatI	GCNGC	5 cut(s)	368, 501, 1071, 1183, 1368
Sau3AI	GATC	6 cut(s)	19, 514, 553, 670, 1306, 1462
Sau96I	GGNCC	4 cut(s)	619, 688, 774, 1195
ScrFI	CCNGG	2 cut(s)	308, 840
SfaNI	GCATC	3 cut(s)	80, 321, 1354
SfcI	CTRYAG	2 cut(s)	637, 915
SinI	GGWCC	4 cut(s)	619, 688, 774, 1195
SmiMI	CAYNNNNRTG	1 cut(s)	1177
SmlI	CTYRAG	2 cut(s)	133, 575
SmoI	CTYRAG	2 cut(s)	133, 575
SphI	GCATGC	1 cut(s)	33
SsiI	CCGC	1 cut(s)	1182
SspI	AATATT	1 cut(s)	95
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	306, 838
StyI	CCWWGG	1 cut(s)	1152
TaaI	ACNGT	5 cut(s)	202, 666, 738, 862, 1176
TaiI	ACGT	1 cut(s)	596
TatI	WGTACW	2 cut(s)	862, 1188
TauI	GCSGC	1 cut(s)	1185
TfiI	GAWTC	3 cut(s)	293, 893, 1288
Tru1I	TTAA	5 cut(s)	522, 1133, 1203, 1284, 1446
Tru9I	TTAA	5 cut(s)	522, 1133, 1203, 1284, 1446
TscAI	CASTG	8 cut(s)	184, 207, 616, 731, 772, 865, 1179, 1270
TseFI	GTSAC	4 cut(s)	611, 763, 856, 1475
TseI	GCWGC	4 cut(s)	367, 500, 1070, 1367
Tsp45I	GTSAC	4 cut(s)	611, 763, 856, 1475
TspDTI	ATGAA	9 cut(s)	225, 708, 731, 906, 972, 1157, 1326, 1343, 1400
TspRI	CASTG	8 cut(s)	184, 207, 616, 731, 772, 865, 1179, 1270
VpaK11BI	GGWCC	4 cut(s)	619, 688, 774, 1195
XagI	CCTNNNNNAGG	1 cut(s)	1202
XapI	RAATTY	3 cut(s)	632, 939, 1161
XceI	RCATGY	1 cut(s)	33
XmiI	GTMKAC	2 cut(s)	9, 380
XmnI	GAANNNNTTC	1 cut(s)	813
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.