Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000162

Physical Location & Seq

Genomic Coordinates Reverse (-)

11517473 .. 11518830

Gene Structure 1358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19681.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCCTCCAATGAAAATCGCTCAACAAGGCAACAAAGGGACTGTCGTGTCAAACCTGGAAAATATGGAACAAATCTATCAACATCGACAGATGGCGAATTCATCCAGTTTGATGAAGGATGGGAGTTTCTGCAGAAGGGGATCACAAAGCTGAAGAGGATCCTAGAAGGACTACCAGAAACTCAGTTCACCTCAGAGGAATATATGAAGCTCTACTCCACTGTTTACAAAATGTGTACTCAGGATCCCCTTGATGATTACTCTCAGCAACTTTATGACAAATATCGGGAGACATTTGAGGTTTACATTATTTCAACAGTGCTGCCAGCTCTAAGAGAAAAGCCTGAAGAGTCGATGCTGCAGGAACTTGTCAAAAGATGGAAAAATCATAAAATTATGGTATGGTGGCTGTCACGCTTCTATCACTTTATTGATTGCTACTTCATCGCAAGGAGGTCACTTCCCACCCTAAATGAAGTTGCACTTAAATCCTTCCGGGATTTGGTTTATTGTGAGGTGAATGCTAATGCCAGAGTTGCTTTGATTGATCTGATTCACAAAGAACGCGAAGGAGGGCAGATCGACAGAGAGCTAGTGAAGAATGTGGTAGAACTGTTGGTTGAAATCGGAAATGGGAAAATGGATGCTTACGAGAAGGACTTGGAAGCTCACATACTGGAAAACACTAGCGATTACTATTCTCTTAAAGCATCAAGTTGGATTATAGAGTATTCTTCTCCAGATTACATGTTGAAGGTCGACGAATGCTTGAGAATGGAGAGGGAGAGAGTTGCTCATTACCTGCATTCAAGCAGTGAGCAGAAGCTGGTGAACAAAGTTAAAGATGAGTTGTTGGTGGTTTATGCAAACAATGACATAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000228 GO:0000793 GO:0000794 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009524 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010154 GO:0015630 GO:0019899 GO:0022414 GO:0023052 GO:0031461 GO:0031625 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0099402 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Cullin Cullin_Nedd8

Protein Analysis

295

Amino Acids

34.74

Weight (kDa)

5.56

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin	PF00888	41 - 287	2.9e-49	Cullin alpha solenoid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca	FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica	MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica	Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis	pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis	RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata	RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora	Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa	Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha	Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana	Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
Acc36I	ACCTGC	1 cut(s)	810
AccI	GTMKAC	1 cut(s)	759
AccII	CGCG	1 cut(s)	567
AclWI	GGATC	5 cut(s)	149, 154, 167, 239, 252
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	2 cut(s)	173, 366
AfaI	GTAC	1 cut(s)	238
AfiI	CCNNNNNNNGG	1 cut(s)	502
AflIII	ACRYGT	1 cut(s)	747
AgsI	TTSAA	4 cut(s)	315, 623, 754, 810
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	6 cut(s)	151, 211, 329, 592, 668, 826
AluI	AGCT	6 cut(s)	151, 211, 329, 592, 668, 826
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	5 cut(s)	149, 154, 167, 239, 252
AlwNI	CAGNNNCTG	1 cut(s)	826
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	322, 358
ApoI	RAATTY	1 cut(s)	98
ArsI	GACNNNNNNTTYG	2 cut(s)	28, 60
AsuC2I	CCSGG	1 cut(s)	497
AsuHPI	GGTGA	3 cut(s)	181, 529, 841
BamHI	GGATCC	2 cut(s)	159, 244
BarI	GAAGNNNNNNTAC	2 cut(s)	657, 689
BbvI	GCAGC	2 cut(s)	309, 345
BccI	CCATC	3 cut(s)	86, 114, 372
BciT130I	CCWGG	1 cut(s)	57
BcnI	CCSGG	1 cut(s)	497
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	3 cut(s)	164, 593, 687
BfmI	CTRYAG	2 cut(s)	131, 359
BfuAI	ACCTGC	1 cut(s)	810
BisI	GCNGC	2 cut(s)	323, 359
BlsI	GCNGC	2 cut(s)	324, 360
Bme1390I	CCNGG	2 cut(s)	57, 497
BmiI	GGNNCC	2 cut(s)	161, 246
BmrFI	CCNGG	2 cut(s)	57, 497
BmsI	GCATC	3 cut(s)	345, 634, 719
BplI	GAGNNNNNCTC	2 cut(s)	778, 810
BpmI	CTGGAG	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	790
BpuMI	CCSGG	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse1I	ACTGG	2 cut(s)	106, 681
BseBI	CCWGG	1 cut(s)	57
BseGI	GGATG	3 cut(s)	102, 125, 649
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMII	CTCAG	4 cut(s)	197, 207, 254, 278
BseNI	ACTGG	2 cut(s)	106, 681
BseXI	GCAGC	2 cut(s)	309, 345
Bsh1236I	CGCG	1 cut(s)	567
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	496
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmAI	GTCTC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	53
BsmI	GAATGC	3 cut(s)	526, 770, 805
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	5 cut(s)	141, 159, 244, 547, 579
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	196, 206, 253, 277
BspFNI	CGCG	1 cut(s)	567
BspLI	GGNNCC	2 cut(s)	161, 246
BspMAI	CTGCAG	2 cut(s)	135, 363
BspMI	ACCTGC	1 cut(s)	810
BspPI	GGATC	5 cut(s)	149, 154, 167, 239, 252
BsrI	ACTGG	2 cut(s)	106, 681
BssMI	GATC	5 cut(s)	141, 159, 244, 547, 579
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	4 cut(s)	44, 223, 319, 615
Bst6I	CTCTTC	2 cut(s)	149, 342
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	5 cut(s)	183, 193, 240, 264, 332
BstF5I	GGATG	3 cut(s)	102, 125, 649
BstFNI	CGCG	1 cut(s)	567
BstKTI	GATC	5 cut(s)	144, 162, 247, 550, 582
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	5 cut(s)	141, 159, 244, 547, 579
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	1 cut(s)	751
BstSCI	CCNGG	2 cut(s)	55, 495
BstSFI	CTRYAG	2 cut(s)	131, 359
BstUI	CGCG	1 cut(s)	567
BstV1I	GCAGC	2 cut(s)	309, 345
BstX2I	RGATCY	2 cut(s)	159, 244
BstYI	RGATCY	2 cut(s)	159, 244
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	430
BtsCI	GGATG	3 cut(s)	102, 125, 649
BtsI	GCAGTG	1 cut(s)	820
BtsIMutI	CAGTG	3 cut(s)	219, 324, 820
BveI	ACCTGC	1 cut(s)	810
Cac8I	GCNNGC	1 cut(s)	327
CaiI	CAGNNNCTG	1 cut(s)	826
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	1 cut(s)	748
CviJI	RGCY	9 cut(s)	5, 151, 211, 329, 343, 409, 592, 668, 826
CviKI_1	RGCY	9 cut(s)	5, 151, 211, 329, 343, 409, 592, 668, 826
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	5 cut(s)	183, 193, 240, 264, 332
DpnI	GATC	5 cut(s)	143, 161, 246, 549, 581
DpnII	GATC	5 cut(s)	141, 159, 244, 547, 579
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
Eam1104I	CTCTTC	2 cut(s)	149, 342
EarI	CTCTTC	2 cut(s)	149, 342
Eco57I	CTGAAG	2 cut(s)	173, 366
EcoRI	GAATTC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	55
FaeI	CATG	1 cut(s)	751
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	1 cut(s)	747
FblI	GTMKAC	1 cut(s)	759
Fnu4HI	GCNGC	2 cut(s)	323, 359
FokI	GGATG	3 cut(s)	89, 132, 656
Fsp4HI	GCNGC	2 cut(s)	323, 359
FspBI	CTAG	3 cut(s)	164, 593, 687
GluI	GCNGC	2 cut(s)	323, 359
GsuI	CTGGAG	1 cut(s)	723
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	496
Hin1II	CATG	1 cut(s)	751
HincII	GTYRAC	1 cut(s)	760
HindII	GTYRAC	1 cut(s)	760
HinfI	GANTC	2 cut(s)	350, 553
HpaII	CCGG	1 cut(s)	496
HphI	GGTGA	3 cut(s)	181, 529, 841
Hpy166II	GTNNAC	6 cut(s)	189, 226, 237, 304, 760, 832
Hpy188I	TCNGA	3 cut(s)	196, 552, 629
Hpy188III	TCNNGA	3 cut(s)	242, 287, 740
Hpy8I	GTNNAC	6 cut(s)	189, 226, 237, 304, 760, 832
Hpy99I	CGWCG	1 cut(s)	764
HpyAV	CCTTC	7 cut(s)	110, 130, 161, 502, 563, 649, 748
HpyCH4III	ACNGT	4 cut(s)	44, 223, 319, 615
HpyCH4V	TGCA	5 cut(s)	133, 361, 482, 805, 866
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
HpyF3I	CTNAG	5 cut(s)	183, 193, 240, 264, 332
Hsp92II	CATG	1 cut(s)	751
Kzo9I	GATC	5 cut(s)	141, 159, 244, 547, 579
Lsp1109I	GCAGC	2 cut(s)	309, 345
LweI	GCATC	3 cut(s)	345, 634, 719
MaeI	CTAG	3 cut(s)	164, 593, 687
MaeIII	GTNAC	2 cut(s)	411, 456
MalI	GATC	5 cut(s)	143, 161, 246, 549, 581
MboI	GATC	5 cut(s)	141, 159, 244, 547, 579
MboII	GAAGA	4 cut(s)	166, 359, 610, 726
MflI	RGATCY	2 cut(s)	159, 244
MluCI	AATT	2 cut(s)	98, 393
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	698
MnlI	CCTC	9 cut(s)	16, 150, 190, 202, 292, 447, 508, 566, 774
MseI	TTAA	3 cut(s)	486, 705, 840
MspI	CCGG	1 cut(s)	496
MspR9I	CCNGG	2 cut(s)	57, 497
Mva1269I	GAATGC	3 cut(s)	526, 770, 805
MvaI	CCWGG	1 cut(s)	57
MvnI	CGCG	1 cut(s)	567
MwoI	GCNNNNNNNGC	1 cut(s)	536
NciI	CCSGG	1 cut(s)	497
NdeII	GATC	5 cut(s)	141, 159, 244, 547, 579
NlaIII	CATG	1 cut(s)	751
NlaIV	GGNNCC	2 cut(s)	161, 246
NmuCI	GTSAC	2 cut(s)	411, 456
NspI	RCATGY	1 cut(s)	751
PciI	ACATGT	1 cut(s)	747
PctI	GAATGC	3 cut(s)	526, 770, 805
PfeI	GAWTC	1 cut(s)	553
PfoI	TCCNGGA	1 cut(s)	495
PkrI	GCNGC	2 cut(s)	324, 360
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PscI	ACATGT	1 cut(s)	747
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	161, 246
PstI	CTGCAG	2 cut(s)	135, 363
PstNI	CAGNNNCTG	1 cut(s)	826
PsuI	RGATCY	2 cut(s)	159, 244
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SalI	GTCGAC	1 cut(s)	758
SaqAI	TTAA	3 cut(s)	486, 705, 840
SatI	GCNGC	2 cut(s)	323, 359
Sau3AI	GATC	5 cut(s)	141, 159, 244, 547, 579
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	2 cut(s)	57, 497
SfaNI	GCATC	3 cut(s)	345, 634, 719
SfcI	CTRYAG	2 cut(s)	131, 359
SmlI	CTYRAG	1 cut(s)	769
SmoI	CTYRAG	1 cut(s)	769
Sse9I	AATT	2 cut(s)	98, 393
SspMI	CTAG	3 cut(s)	164, 593, 687
StyD4I	CCNGG	2 cut(s)	55, 495
TaaI	ACNGT	4 cut(s)	44, 223, 319, 615
TaqI	TCGA	4 cut(s)	86, 353, 582, 759
TasI	AATT	2 cut(s)	98, 393
TatI	WGTACW	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	553
Tru1I	TTAA	3 cut(s)	486, 705, 840
Tru9I	TTAA	3 cut(s)	486, 705, 840
TscAI	CASTG	3 cut(s)	226, 324, 820
TseFI	GTSAC	2 cut(s)	411, 456
TseI	GCWGC	2 cut(s)	322, 358
Tsp45I	GTSAC	2 cut(s)	411, 456
TspDTI	ATGAA	6 cut(s)	27, 91, 129, 221, 433, 489
TspRI	CASTG	3 cut(s)	226, 324, 820
XapI	RAATTY	1 cut(s)	98
XceI	RCATGY	1 cut(s)	751
XmiI	GTMKAC	1 cut(s)	759
XspI	CTAG	3 cut(s)	164, 593, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.