Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000162

Physical Location & Seq

Genomic Coordinates Forward (+)

47188906 .. 47190342

Gene Structure 1437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00253130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGCATCTCTTCATCTTCTTCATCCTTTTCGGTTCCATCTTTCTTGATACAATGGCCTCCAATGGAAACCACACAACATTGCAAGAAGGTCAGACTCCACTACAGCTGCCTAAAGCAGAACAAAGGGACTGTCATGTCAAACCTGGGGAATATGGAACAGTTCTTTTCACATCGACGGATCGCAATTTCATCGAGTTTGATGAAGGATGGGAGTTTCTGCAGAATGGGATCACAAAGATGAAGAGGATCGTAGAAGGAATGCCAGAAACTCAGTTCAGCTCAGATGATTATATGAATCTCTACACGACGGTTTACAAATTGTGTACTCAGGATCCCCTTAATGATTACTCTCAACAGCTTTATGACAAATATCGGGAGACATTTGAGGTTTACATTACTTCAACGGTGCTTCCTTCTCTACGAGAGAAGCCTGAAGAGTCGATGCTGCAGGAACTTGTCAAAAGATGGACAAATCATAAAGTTATGGCATGGTGGCTGTCACGCTTCTTTCATTTTCTCGATCGCTACTTCATCACGAGGAGGTCGCTTCCCTCTCTAAATGAAGTTGCCCTTATCTCCTTCCGTGATTTGGTTTATCATGAGGTGAATGCTAATGCCAGAGTTGCTGTGATTGATCTCATCTGCAAAGAACGTGAAGGAGAGCAGATTGACAGAGAGCTAGTGAAGAATCTGGTAGACATGTTTTTTGAAATAGGAAATGGGAAAATGGATGCTTACGAAAAGGACTTGGAAGCTCACATGCTGGAAAACACTGGCGATTACTATTCTCTTAAAGCGTCGAGTTGGGTTCTAGAGTATTCTTCTCCAGATTACATGTTGAAGGTCGATGAATGCTTGAGAATGGAGAGGGAGAGAGTTTCTCATTACCTGCATTCAAGCAGTGAGCAGAAGCTGGTGAACAAAGTTAAAGATGAGTTGCTGGTGGTTTATGCAAACAATGACATAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000228 GO:0000793 GO:0000794 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009524 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010154 GO:0015630 GO:0019899 GO:0022414 GO:0023052 GO:0031461 GO:0031625 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0099402 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Cullin Cullin_Nedd8

Protein Analysis

323

Amino Acids

38.14

Weight (kDa)

5.11

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin	PF00888	70 - 316	3.6e-52	Cullin alpha solenoid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca	FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica	MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica	Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis	pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis	RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata	RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora	Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa	Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha	Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana	Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
Acc36I	ACCTGC	1 cut(s)	897
AccI	GTMKAC	1 cut(s)	696
AclWI	GGATC	5 cut(s)	186, 236, 254, 326, 339
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	1 cut(s)	325
AfiI	CCNNNNNNNGG	1 cut(s)	589
AflIII	ACRYGT	2 cut(s)	699, 834
AgsI	TTSAA	4 cut(s)	402, 710, 841, 897
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	6 cut(s)	106, 279, 358, 679, 755, 913
AluI	AGCT	6 cut(s)	106, 279, 358, 679, 755, 913
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	5 cut(s)	186, 236, 254, 326, 339
AlwNI	CAGNNNCTG	1 cut(s)	913
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	2 cut(s)	106, 445
ArsI	GACNNNNNNTTYG	4 cut(s)	115, 147, 689, 721
AsuHPI	GGTGA	2 cut(s)	616, 928
BamHI	GGATCC	1 cut(s)	331
BauI	CACGAG	1 cut(s)	535
BbvI	GCAGC	2 cut(s)	93, 432
BccI	CCATC	3 cut(s)	44, 201, 459
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	2 cut(s)	680, 812
BfmI	CTRYAG	3 cut(s)	101, 218, 446
BfuAI	ACCTGC	1 cut(s)	897
BisI	GCNGC	2 cut(s)	107, 446
BlsI	GCNGC	2 cut(s)	108, 447
Bme1390I	CCNGG	1 cut(s)	144
BmiI	GGNNCC	2 cut(s)	34, 333
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	3 cut(s)	13, 432, 721
BplI	GAGNNNNNCTC	2 cut(s)	865, 897
BpmI	CTGGAG	1 cut(s)	810
BpuEI	CTTGAG	1 cut(s)	877
BsaJI	CCNNGG	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	589
Bse1I	ACTGG	1 cut(s)	778
Bse3DI	GCAATG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	3 cut(s)	21, 212, 736
BseLI	CCNNNNNNNGG	1 cut(s)	589
BseMI	GCAATG	1 cut(s)	77
BseMII	CTCAG	3 cut(s)	284, 294, 341
BseNI	ACTGG	1 cut(s)	778
BseRI	GAGGAG	1 cut(s)	553
BseXI	GCAGC	2 cut(s)	93, 432
Bsh1285I	CGRYCG	1 cut(s)	523
BshFI	GGCC	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	523
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	589
BsmAI	GTCTC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	140
BsmI	GAATGC	4 cut(s)	264, 613, 857, 892
BsnI	GGCC	1 cut(s)	56
Bsp143I	GATC	6 cut(s)	178, 228, 246, 331, 520, 634
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	3 cut(s)	283, 293, 340
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	2 cut(s)	34, 333
BspMAI	CTGCAG	2 cut(s)	222, 450
BspMI	ACCTGC	1 cut(s)	897
BspPI	GGATC	5 cut(s)	186, 236, 254, 326, 339
BsrDI	GCAATG	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	778
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	6 cut(s)	178, 228, 246, 331, 520, 634
BssSI	CACGAG	1 cut(s)	535
Bst2BI	CACGAG	1 cut(s)	535
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	4 cut(s)	131, 160, 310, 406
Bst6I	CTCTTC	3 cut(s)	14, 236, 429
BstDEI	CTNAG	3 cut(s)	270, 280, 327
BstF5I	GGATG	3 cut(s)	21, 212, 736
BstKTI	GATC	6 cut(s)	181, 231, 249, 334, 523, 637
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	6 cut(s)	178, 228, 246, 331, 520, 634
BstMCI	CGRYCG	1 cut(s)	523
BstMWI	GCNNNNNNNGC	1 cut(s)	623
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	3 cut(s)	703, 763, 838
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	3 cut(s)	101, 218, 446
BstV1I	GCAGC	2 cut(s)	93, 432
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	3 cut(s)	21, 212, 736
BtsI	GCAGTG	1 cut(s)	907
BtsIMutI	CAGTG	2 cut(s)	771, 907
BveI	ACCTGC	1 cut(s)	897
CaiI	CAGNNNCTG	1 cut(s)	913
CciI	TCATGA	1 cut(s)	598
CseI	GACGC	1 cut(s)	786
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	6 cut(s)	134, 489, 599, 700, 760, 835
CviJI	RGCY	9 cut(s)	56, 106, 279, 358, 430, 496, 679, 755, 913
CviKI_1	RGCY	9 cut(s)	56, 106, 279, 358, 430, 496, 679, 755, 913
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	3 cut(s)	270, 280, 327
DpnI	GATC	6 cut(s)	180, 230, 248, 333, 522, 636
DpnII	GATC	6 cut(s)	178, 228, 246, 331, 520, 634
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
Eam1104I	CTCTTC	3 cut(s)	14, 236, 429
EarI	CTCTTC	3 cut(s)	14, 236, 429
Eco57I	CTGAAG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	142
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	6 cut(s)	137, 492, 602, 703, 763, 838
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	6 cut(s)	133, 488, 598, 699, 759, 834
FblI	GTMKAC	1 cut(s)	696
Fnu4HI	GCNGC	2 cut(s)	107, 446
FokI	GGATG	3 cut(s)	8, 219, 743
Fsp4HI	GCNGC	2 cut(s)	107, 446
FspBI	CTAG	2 cut(s)	680, 812
GluI	GCNGC	2 cut(s)	107, 446
GsuI	CTGGAG	1 cut(s)	810
HaeIII	GGCC	1 cut(s)	56
HgaI	GACGC	1 cut(s)	786
Hin1II	CATG	6 cut(s)	137, 492, 602, 703, 763, 838
HinfI	GANTC	4 cut(s)	94, 295, 437, 688
HphI	GGTGA	2 cut(s)	616, 928
Hpy166II	GTNNAC	5 cut(s)	313, 324, 391, 697, 919
Hpy188I	TCNGA	2 cut(s)	93, 283
Hpy188III	TCNNGA	8 cut(s)	44, 329, 374, 518, 535, 599, 812, 827
Hpy8I	GTNNAC	5 cut(s)	313, 324, 391, 697, 919
Hpy99I	CGWCG	3 cut(s)	178, 310, 802
HpyAV	CCTTC	7 cut(s)	80, 197, 248, 423, 589, 650, 835
HpyCH4III	ACNGT	4 cut(s)	131, 160, 310, 406
HpyCH4IV	ACGT	1 cut(s)	652
HpyCH4V	TGCA	7 cut(s)	4, 82, 220, 448, 645, 892, 953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	623
HpyF3I	CTNAG	3 cut(s)	270, 280, 327
HpySE526I	ACGT	1 cut(s)	652
Hsp92II	CATG	6 cut(s)	137, 492, 602, 703, 763, 838
Kzo9I	GATC	6 cut(s)	178, 228, 246, 331, 520, 634
Lsp1109I	GCAGC	2 cut(s)	93, 432
LweI	GCATC	3 cut(s)	13, 432, 721
MaeI	CTAG	2 cut(s)	680, 812
MaeII	ACGT	1 cut(s)	652
MaeIII	GTNAC	1 cut(s)	498
MalI	GATC	6 cut(s)	180, 230, 248, 333, 522, 636
MboI	GATC	6 cut(s)	178, 228, 246, 331, 520, 634
MboII	GAAGA	6 cut(s)	7, 10, 253, 446, 697, 813
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	2 cut(s)	184, 317
MlyI	GAGTC	2 cut(s)	88, 446
MnlI	CCTC	8 cut(s)	67, 237, 379, 531, 534, 562, 595, 861
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	339, 792, 927
MslI	CAYNNNNRTG	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	144
Mva1269I	GAATGC	4 cut(s)	264, 613, 857, 892
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	623
NdeII	GATC	6 cut(s)	178, 228, 246, 331, 520, 634
NlaIII	CATG	6 cut(s)	137, 492, 602, 703, 763, 838
NlaIV	GGNNCC	2 cut(s)	34, 333
NmuCI	GTSAC	1 cut(s)	498
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	3 cut(s)	703, 763, 838
PagI	TCATGA	1 cut(s)	598
PciI	ACATGT	2 cut(s)	699, 834
PctI	GAATGC	4 cut(s)	264, 613, 857, 892
PfeI	GAWTC	2 cut(s)	295, 688
PkrI	GCNGC	2 cut(s)	108, 447
Ple19I	CGATCG	1 cut(s)	523
PleI	GAGTC	2 cut(s)	88, 445
PpsI	GAGTC	2 cut(s)	88, 445
PscI	ACATGT	2 cut(s)	699, 834
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	34, 333
PstI	CTGCAG	2 cut(s)	222, 450
PstNI	CAGNNNCTG	1 cut(s)	913
PsuI	RGATCY	1 cut(s)	331
PvuI	CGATCG	1 cut(s)	523
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	3 cut(s)	339, 792, 927
SatI	GCNGC	2 cut(s)	107, 446
Sau3AI	GATC	6 cut(s)	178, 228, 246, 331, 520, 634
SchI	GAGTC	2 cut(s)	88, 446
ScrFI	CCNGG	1 cut(s)	144
SfaNI	GCATC	3 cut(s)	13, 432, 721
SfcI	CTRYAG	3 cut(s)	101, 218, 446
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	856
SmoI	CTYRAG	1 cut(s)	856
Sse9I	AATT	2 cut(s)	184, 317
SspMI	CTAG	2 cut(s)	680, 812
StyD4I	CCNGG	1 cut(s)	142
TaaI	ACNGT	4 cut(s)	131, 160, 310, 406
TaiI	ACGT	1 cut(s)	655
TaqI	TCGA	6 cut(s)	173, 192, 440, 519, 800, 846
TasI	AATT	2 cut(s)	184, 317
TatI	WGTACW	1 cut(s)	323
TfiI	GAWTC	2 cut(s)	295, 688
Tru1I	TTAA	3 cut(s)	339, 792, 927
Tru9I	TTAA	3 cut(s)	339, 792, 927
TscAI	CASTG	2 cut(s)	778, 907
TseFI	GTSAC	1 cut(s)	498
TseI	GCWGC	2 cut(s)	106, 445
Tsp45I	GTSAC	1 cut(s)	498
TspDTI	ATGAA	9 cut(s)	10, 178, 216, 254, 308, 500, 520, 576, 864
TspGWI	ACGGA	2 cut(s)	191, 572
TspRI	CASTG	2 cut(s)	778, 907
XbaI	TCTAGA	1 cut(s)	811
XceI	RCATGY	3 cut(s)	703, 763, 838
XmiI	GTMKAC	1 cut(s)	696
XspI	CTAG	2 cut(s)	680, 812
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.