Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000423.1

Orthogroup ID

OG0000162

Physical Location & Seq

Genomic Coordinates Reverse (-)

13326 .. 13658

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000423.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgatcttaccccagttcaaaggaggcaatggctgccttaagaaatacaagatccttctcaaggagccaagtacaaagactatctcgcagagtgacacctttatgctcaactccaagttcactgacaaaatgagaaaggaatttcctatgccaccactggacgaaaggaagaaggtgactgaagatgttgacaaagaccggaaatttgctatagatgctgcaattgtgagaattatgaagagtaggaaagttttgggtcaccagcaattggtcatggagtgtgttgagatattgaagggcttgttcaagccggacgtacatcaaagcaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000228 GO:0000793 GO:0000794 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009524 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010154 GO:0015630 GO:0019899 GO:0022414 GO:0023052 GO:0031461 GO:0031625 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0099402 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Cullin Cullin_Nedd8

Protein Analysis

110

Amino Acids

12.7

Weight (kDa)

9.63

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca	FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica	MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica	Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis	pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis	RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata	RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora	Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa	Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha	Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana	Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	268
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	2 cut(s)	140, 203
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	73, 318
AfiI	CCNNNNNNNGG	2 cut(s)	61, 268
AflII	CTTAAG	1 cut(s)	38
AgsI	TTSAA	3 cut(s)	19, 295, 307
AlwI	GGATC	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	33, 218
ApoI	RAATTY	2 cut(s)	140, 203
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AsuHPI	GGTGA	2 cut(s)	187, 251
BbvI	GCAGC	2 cut(s)	20, 205
BfmI	CTRYAG	1 cut(s)	210
BfrI	CTTAAG	1 cut(s)	38
BisI	GCNGC	2 cut(s)	34, 219
BlsI	GCNGC	2 cut(s)	35, 220
BmiI	GGNNCC	1 cut(s)	66
BmrI	ACTGGG	1 cut(s)	7
BmsI	GCATC	1 cut(s)	205
BmuI	ACTGGG	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 268
Bse1I	ACTGG	2 cut(s)	13, 162
Bse3DI	GCAATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	2 cut(s)	61, 268
BseMI	GCAATG	1 cut(s)	34
BseNI	ACTGG	2 cut(s)	13, 162
BseXI	GCAGC	2 cut(s)	20, 205
BsiSI	CCGG	2 cut(s)	199, 311
BslI	CCNNNNNNNGG	2 cut(s)	61, 268
Bsp143I	GATC	2 cut(s)	3, 51
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	46
BspTI	CTTAAG	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	13, 162
BssMI	GATC	2 cut(s)	3, 51
Bst6I	CTCTTC	1 cut(s)	233
BstAFI	CTTAAG	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstEII	GGTNACC	1 cut(s)	257
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstKTI	GATC	2 cut(s)	6, 54
BstMBI	GATC	2 cut(s)	3, 51
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 215
BstPI	GGTNACC	1 cut(s)	257
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	20, 205
BstX2I	RGATCY	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	120, 155
Csp6I	GTAC	2 cut(s)	72, 317
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	4 cut(s)	33, 67, 300, 310
CviKI_1	RGCY	4 cut(s)	33, 67, 300, 310
CviQI	GTAC	2 cut(s)	72, 317
DpnI	GATC	2 cut(s)	5, 53
DpnII	GATC	2 cut(s)	3, 51
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	201
Eco91I	GGTNACC	1 cut(s)	257
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoO65I	GGTNACC	1 cut(s)	257
FaeI	CATG	1 cut(s)	277
FaiI	YATR	5 cut(s)	104, 149, 212, 236, 275
FatI	CATG	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	34, 219
Fsp4HI	GCNGC	2 cut(s)	34, 219
GluI	GCNGC	2 cut(s)	34, 219
HapII	CCGG	2 cut(s)	199, 311
Hin1II	CATG	1 cut(s)	277
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HpaII	CCGG	2 cut(s)	199, 311
HphI	GGTGA	2 cut(s)	187, 251
Hpy166II	GTNNAC	2 cut(s)	120, 190
Hpy8I	GTNNAC	2 cut(s)	120, 190
HpyAV	CCTTC	3 cut(s)	65, 166, 289
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 215
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	3, 51
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	5 cut(s)	26, 143, 212, 275, 324
Lsp1109I	GCAGC	2 cut(s)	20, 205
LweI	GCATC	1 cut(s)	205
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	3 cut(s)	92, 175, 257
MalI	GATC	2 cut(s)	5, 53
MboI	GATC	2 cut(s)	3, 51
MboII	GAAGA	3 cut(s)	181, 194, 250
MfeI	CAATTG	2 cut(s)	222, 266
MflI	RGATCY	1 cut(s)	51
MluCI	AATT	6 cut(s)	140, 203, 222, 231, 266, 328
MnlI	CCTC	1 cut(s)	17
MseI	TTAA	2 cut(s)	39, 331
MslI	CAYNNNNRTG	1 cut(s)	101
MspCI	CTTAAG	1 cut(s)	38
MspI	CCGG	2 cut(s)	199, 311
MunI	CAATTG	2 cut(s)	222, 266
MwoI	GCNNNNNNNGC	2 cut(s)	33, 215
NdeII	GATC	2 cut(s)	3, 51
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	3 cut(s)	92, 175, 257
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	2 cut(s)	35, 220
PspEI	GGTNACC	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	51
RsaI	GTAC	2 cut(s)	73, 318
RsaNI	GTAC	2 cut(s)	72, 317
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	39, 331
SatI	GCNGC	2 cut(s)	34, 219
Sau3AI	GATC	2 cut(s)	3, 51
SetI	ASST	3 cut(s)	101, 177, 318
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	1 cut(s)	210
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	38, 59
SmoI	CTYRAG	2 cut(s)	38, 59
Sse9I	AATT	6 cut(s)	140, 203, 222, 231, 266, 328
TaiI	ACGT	1 cut(s)	318
TasI	AATT	6 cut(s)	140, 203, 222, 231, 266, 328
TatI	WGTACW	1 cut(s)	71
Tru1I	TTAA	2 cut(s)	39, 331
Tru9I	TTAA	2 cut(s)	39, 331
TscAI	CASTG	2 cut(s)	127, 162
TseFI	GTSAC	3 cut(s)	92, 175, 257
TseI	GCWGC	2 cut(s)	33, 218
Tsp45I	GTSAC	3 cut(s)	92, 175, 257
TspDTI	ATGAA	1 cut(s)	251
TspRI	CASTG	2 cut(s)	127, 162
Van91I	CCANNNNNTGG	1 cut(s)	268
Vha464I	CTTAAG	1 cut(s)	38
XagI	CCTNNNNNAGG	1 cut(s)	59
XapI	RAATTY	2 cut(s)	140, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.