Rorug07G0084300

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
6651882 .. 6652082
201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0084300.1

Sequence Viewer

Length: 201 bp
ATGATACTGGTGGCGATAGTGGCGGAGATGATGGAGGAGTACACGGCGTTGCTGGCCAGGATTCTGGAGCACATGTTCCAGTCTGCACCTTTTCCGAGGAGGGTTCGGTTTCTGATTCTCAGAAACCTTCCTTTTGTGTCCACATACCCTCTTCTTCCTCCCCCTCCTCGTCCTTTGTTTGGAGCCCCTGCAGCTGCTTAG

Protein Analysis

66

Amino Acids

7.46

Weight (kDa)

9.95

Isoelectric Point (pI)

72.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 54
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 179
AflIII ACRYGT 1 cut(s) 72
AjnI CCWGG 1 cut(s) 56
AloI GAACNNNNNNTCC 2 cut(s) 59, 91
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw21I GWGCWC 1 cut(s) 72
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 2 cut(s) 191, 194
BalI TGGCCA 1 cut(s) 56
BanII GRGCYC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 181
BccI CCATC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 60
BciT130I CCWGG 1 cut(s) 58
BfmI CTRYAG 1 cut(s) 189
BisI GCNGC 2 cut(s) 192, 195
BlsI GCNGC 2 cut(s) 193, 196
Bme1390I CCNGG 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 95
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse1I ACTGG 2 cut(s) 12, 79
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMII CTCAG 1 cut(s) 133
BseNI ACTGG 2 cut(s) 12, 79
BseRI GAGGAG 3 cut(s) 50, 112, 156
BseXI GCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 179
BsnI GGCC 1 cut(s) 56
Bsp1286I GDGCHC 2 cut(s) 72, 187
BspACI CCGC 1 cut(s) 23
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 184
BspMAI CTGCAG 1 cut(s) 193
BsrI ACTGG 2 cut(s) 12, 79
BssECI CCNNGG 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 119, 198
BstMWI GCNNNNNNNGC 3 cut(s) 20, 53, 191
BstNI CCWGG 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 181
BstXI CCANNNNNNTGG 1 cut(s) 64
BsuRI GGCC 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 40
CviAII CATG 1 cut(s) 73
CviJI RGCY 3 cut(s) 56, 185, 194
CviKI_1 RGCY 3 cut(s) 56, 185, 194
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 2 cut(s) 119, 198
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
EciI GGCGGA 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 187
FaeI CATG 1 cut(s) 76
FaiI YATR 2 cut(s) 74, 145
FatI CATG 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 192, 195
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 2 cut(s) 192, 195
GluI GCNGC 2 cut(s) 192, 195
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 1 cut(s) 56
Hin1II CATG 1 cut(s) 76
HinfI GANTC 2 cut(s) 61, 115
Hpy166II GTNNAC 2 cut(s) 42, 141
Hpy188I TCNGA 3 cut(s) 96, 114, 122
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 2 cut(s) 42, 141
HpyAV CCTTC 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 86, 191
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 53, 191
HpyF3I CTNAG 2 cut(s) 119, 198
Hsp92II CATG 1 cut(s) 76
LmnI GCTCC 2 cut(s) 67, 182
LpnPI CCDG 5 cut(s) 38, 43, 50, 70, 92
Lsp1109I GCAGC 1 cut(s) 181
MboII GAAGA 2 cut(s) 143, 146
MhlI GDGCHC 2 cut(s) 72, 187
MlsI TGGCCA 1 cut(s) 56
MluNI TGGCCA 1 cut(s) 56
MnlI CCTC 7 cut(s) 28, 90, 93, 159, 168, 174, 177
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
Msp20I TGGCCA 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 3 cut(s) 20, 53, 191
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 184
NspI RCATGY 1 cut(s) 76
PciI ACATGT 1 cut(s) 72
PfeI GAWTC 2 cut(s) 61, 115
PkrI GCNGC 2 cut(s) 193, 196
PscI ACATGT 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 184
PstI CTGCAG 1 cut(s) 193
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SatI GCNGC 2 cut(s) 192, 195
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 2 cut(s) 72, 187
SetI ASST 3 cut(s) 91, 129, 196
SfcI CTRYAG 1 cut(s) 189
SsiI CCGC 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 56
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 2 cut(s) 61, 115
TseI GCWGC 2 cut(s) 191, 194
XceI RCATGY 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.