Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000162

Physical Location & Seq

Genomic Coordinates Forward (+)

6574801 .. 6575568

Gene Structure 768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0083200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCAGGAAGAGGAAAGGGAGGGAAGGGGTTGGGGAAAGGCGGAGCAAAGAGGCACAGGAAGGTGCTGAGGGACAACATCCAGGGCATCACCAAGCCTGCGATTCGGAGGCTCGCTCGAAGAGGAGGAGTGAAGCGCATTAGTGGGCTTATCTATGAAGAAACCAGAGGGGTGCTCAAGATCTTCTTGGAGAATGTGATTCGCGACGCGGTGACTTATACTGAGCATGCTAGGAGGAAGACAGTGACCGCCATGGATGTCGTCTATGCTCTCAAGAGGCAGGGCCGAACCCTCTATGGTTTCGGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000228 GO:0000793 GO:0000794 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009524 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010154 GO:0015630 GO:0019899 GO:0022414 GO:0023052 GO:0031461 GO:0031625 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0099402 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Cullin Cullin_Nedd8

Protein Analysis

103

Amino Acids

11.41

Weight (kDa)

11.48

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-T_C	PF15511	44 - 96	3.4e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca	FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica	MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica	Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis	pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis	RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata	RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora	Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa	Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha	Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana	Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	204, 209
AciI	CCGC	3 cut(s)	42, 209, 249
AjnI	CCWGG	1 cut(s)	81
Alw21I	GWGCWC	1 cut(s)	177
AoxI	GGCC	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	2 cut(s)	82, 223
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	177
BbvCI	CCTCAGC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	83
BfaI	CTAG	1 cut(s)	231
BglII	AGATCT	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	245
BplI	GAGNNNNNCTC	4 cut(s)	100, 132, 159, 191
Bpu10I	CCTNAGC	1 cut(s)	68
BpuEI	CTTGAG	2 cut(s)	161, 257
BsaJI	CCNNGG	2 cut(s)	82, 252
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	82, 252
BseGI	GGATG	2 cut(s)	78, 262
BseMII	CTCAG	2 cut(s)	59, 213
BseRI	GAGGAG	2 cut(s)	138, 141
Bsh1236I	CGCG	2 cut(s)	204, 209
BshFI	GGCC	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	252
Bsp68I	TCGCGA	1 cut(s)	204
BspACI	CCGC	3 cut(s)	42, 209, 249
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	2 cut(s)	60, 214
BspFNI	CGCG	2 cut(s)	204, 209
BssECI	CCNNGG	2 cut(s)	82, 252
BssMI	GATC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	2 cut(s)	4, 115
BstC8I	GCNNGC	3 cut(s)	99, 114, 228
BstDEI	CTNAG	2 cut(s)	68, 222
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	78, 262
BstFNI	CGCG	2 cut(s)	204, 209
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	81
BstUI	CGCG	2 cut(s)	204, 209
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	78, 262
BtsIMutI	CAGTG	1 cut(s)	249
BtuMI	TCGCGA	1 cut(s)	204
Cac8I	GCNNGC	3 cut(s)	99, 114, 228
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	283
CseI	GACGC	1 cut(s)	215
CviAII	CATG	2 cut(s)	227, 253
CviJI	RGCY	4 cut(s)	97, 112, 148, 285
CviKI_1	RGCY	4 cut(s)	97, 112, 148, 285
DdeI	CTNAG	2 cut(s)	68, 222
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	4, 115
EarI	CTCTTC	2 cut(s)	4, 115
EciI	GGCGGA	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	2 cut(s)	230, 256
FaiI	YATR	6 cut(s)	156, 219, 228, 254, 267, 297
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	2 cut(s)	226, 252
FokI	GGATG	2 cut(s)	65, 269
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	285
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	230, 256
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HinfI	GANTC	2 cut(s)	103, 199
HphI	GGTGA	2 cut(s)	82, 223
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	4 cut(s)	6, 178, 203, 274
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	19, 55
HpyCH4III	ACNGT	1 cut(s)	244
HpyF3I	CTNAG	2 cut(s)	68, 222
Hsp92II	CATG	2 cut(s)	230, 256
HspAI	GCGC	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	6 cut(s)	43, 68, 95, 111, 178, 266
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	231
MaeIII	GTNAC	2 cut(s)	211, 244
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	5 cut(s)	21, 132, 170, 175, 250
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	2 cut(s)	204, 209
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	2 cut(s)	230, 256
NmuCI	GTSAC	2 cut(s)	211, 244
NruI	TCGCGA	1 cut(s)	204
NspI	RCATGY	1 cut(s)	230
PaeI	GCATGC	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	103, 199
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	180
RruI	TCGCGA	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	1 cut(s)	66
SfaNI	GCATC	1 cut(s)	96
SmlI	CTYRAG	2 cut(s)	176, 272
SmoI	CTYRAG	2 cut(s)	176, 272
SphI	GCATGC	1 cut(s)	230
SsiI	CCGC	3 cut(s)	42, 209, 249
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	244
TaqI	TCGA	1 cut(s)	118
TfiI	GAWTC	2 cut(s)	103, 199
TscAI	CASTG	1 cut(s)	249
TseFI	GTSAC	2 cut(s)	211, 244
Tsp45I	GTSAC	2 cut(s)	211, 244
TspDTI	ATGAA	1 cut(s)	171
TspRI	CASTG	1 cut(s)	249
XceI	RCATGY	1 cut(s)	230
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.