Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000162

Physical Location & Seq

Genomic Coordinates Reverse (-)

32091226 .. 32091790

Gene Structure 565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024117

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAGAAAAATCAAGATTCCTATGCCACCACTGGACGAAAGGAAGAAGATGACTGAAGATGTTGACAAAGACCGGAAATTTGCTATAGATGCTGCAATTGTGAGGATTATGAAGAGTATGAAAATTTTGGGTCACCAGCAATTGGTCATGGAGTGTGTTGAGATATTGAAGGGCTTGTTCAAGCCGGACATCAAAGCAATTAAGAAGCGAATTGAAGATCTCATCACCCGTGAATACCTGGAGAGGGATGAGAAGAATCCTAACACGTTTAGGCAGAAATTTATGCTCATGTCGCTCCACTCTCGATCTTTCGTTACATGCATTGGTGACGGAAGCAATTTGATAATGGATCGAGGAGGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000228 GO:0000793 GO:0000794 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009524 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010154 GO:0015630 GO:0019899 GO:0022414 GO:0023052 GO:0031461 GO:0031625 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0099402 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Cullin Cullin_Nedd8

Protein Analysis

122

Amino Acids

14.15

Weight (kDa)

9.45

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin_Nedd8	PF10557	24 - 86	5.4e-27	Cullin protein neddylation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca	FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica	MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica	Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis	pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis	RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata	RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora	Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa	Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha	Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana	Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	142
AclWI	GGATC	1 cut(s)	357
AcsI	RAATTY	3 cut(s)	77, 123, 278
AcuI	CTGAAG	1 cut(s)	75
AfiI	CCNNNNNNNGG	2 cut(s)	142, 244
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	3 cut(s)	169, 181, 215
AjnI	CCWGG	1 cut(s)	237
AlwI	GGATC	1 cut(s)	357
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	3 cut(s)	77, 123, 278
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AsuHPI	GGTGA	3 cut(s)	125, 217, 338
BbvI	GCAGC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	84
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	79
BpmI	CTGGAG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 244
Bse1I	ACTGG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	239
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	2 cut(s)	142, 244
BseNI	ACTGG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	79
BsiSI	CCGG	2 cut(s)	73, 185
BslI	CCNNNNNNNGG	2 cut(s)	142, 244
Bsp143I	GATC	3 cut(s)	217, 305, 349
BspPI	GGATC	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	36
BssMI	GATC	3 cut(s)	217, 305, 349
Bst2UI	CCWGG	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	107
BstEII	GGTNACC	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	3 cut(s)	220, 308, 352
BstMBI	GATC	3 cut(s)	217, 305, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 292
BstNI	CCWGG	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	321
BstPI	GGTNACC	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	29
CviAII	CATG	3 cut(s)	148, 289, 318
CviJI	RGCY	2 cut(s)	174, 184
CviKI_1	RGCY	2 cut(s)	174, 184
DpnI	GATC	3 cut(s)	219, 307, 351
DpnII	GATC	3 cut(s)	217, 305, 349
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	75
Eco91I	GGTNACC	1 cut(s)	131
EcoO65I	GGTNACC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	237
EcoT22I	ATGCAT	1 cut(s)	323
FaeI	CATG	3 cut(s)	151, 292, 321
FaiI	YATR	8 cut(s)	23, 86, 110, 119, 149, 284, 290, 319
FatI	CATG	3 cut(s)	147, 288, 317
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	260
HapII	CCGG	2 cut(s)	73, 185
Hin1II	CATG	3 cut(s)	151, 292, 321
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	2 cut(s)	16, 256
HpaII	CCGG	2 cut(s)	73, 185
HphI	GGTGA	3 cut(s)	125, 217, 338
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	13, 303
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	2 cut(s)	95, 321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 292
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	3 cut(s)	151, 292, 321
Kzo9I	GATC	3 cut(s)	217, 305, 349
LmnI	GCTCC	1 cut(s)	300
LpnPI	CCDG	6 cut(s)	17, 86, 149, 198, 224, 251
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	79
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	3 cut(s)	131, 313, 326
MalI	GATC	3 cut(s)	219, 307, 351
MboI	GATC	3 cut(s)	217, 305, 349
MboII	GAAGA	6 cut(s)	55, 58, 68, 124, 227, 265
MfeI	CAATTG	2 cut(s)	96, 140
MflI	RGATCY	1 cut(s)	217
MluCI	AATT	8 cut(s)	77, 96, 123, 140, 198, 210, 278, 337
MnlI	CCTC	4 cut(s)	96, 237, 347, 350
Mph1103I	ATGCAT	1 cut(s)	323
MseI	TTAA	1 cut(s)	201
MspI	CCGG	2 cut(s)	73, 185
MspR9I	CCNGG	1 cut(s)	239
MunI	CAATTG	2 cut(s)	96, 140
MvaI	CCWGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	2 cut(s)	89, 292
NdeII	GATC	3 cut(s)	217, 305, 349
NlaIII	CATG	3 cut(s)	151, 292, 321
NmuCI	GTSAC	2 cut(s)	131, 326
NsiI	ATGCAT	1 cut(s)	323
NspI	RCATGY	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	16, 256
PflMI	CCANNNNNTGG	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	237
PspEI	GGTNACC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	3 cut(s)	217, 305, 349
ScrFI	CCNGG	1 cut(s)	239
SetI	ASST	2 cut(s)	240, 269
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	1 cut(s)	84
Sse9I	AATT	8 cut(s)	77, 96, 123, 140, 198, 210, 278, 337
StyD4I	CCNGG	1 cut(s)	237
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	2 cut(s)	304, 352
TasI	AATT	8 cut(s)	77, 96, 123, 140, 198, 210, 278, 337
TfiI	GAWTC	2 cut(s)	16, 256
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	2 cut(s)	131, 326
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	2 cut(s)	131, 326
TspDTI	ATGAA	2 cut(s)	125, 134
TspGWI	ACGGA	1 cut(s)	345
TspRI	CASTG	1 cut(s)	36
Van91I	CCANNNNNTGG	1 cut(s)	142
XapI	RAATTY	3 cut(s)	77, 123, 278
XceI	RCATGY	1 cut(s)	321
Zsp2I	ATGCAT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.