Rorug07G0083400

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
6591092 .. 6593694
2603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0083400.1

Sequence Viewer

Length: 1260 bp
ATGGAAGCGCAACATTCTGGACACGGGCGTATATTTGAAGTGCATGGAGATGTGAAGGATATTGAGTCAAGCTTGCGTGGTAGCAAGATTTGTGCTGAAGCACCATGTGGATTTTCAGATCCTAATAACAGTTCCAAAGATGCTAAGGAACGGTCAGCATCAATGCGGAAGCTTTTGATAGCAGTTGTGCTCTGTGTCGTTTTCATGACTGTGGAAGTTGTTGGGGGTATCAAAGCCAATAGTCTTGCTATTATGACTGATGCAGCTCATCTATTGTCAGATGTTGCAGCATTTGCAATTTCCCTGTTCTCACTGTGGGCATCAGGATGGGAGGCAACTCCACGCCAGACTTATGGCTTCTTCAGAATTGAAATACTTGGTACACTTGTTTCCATCCAGATGATATGGCTTCTTACAGGGATCCTTGTATACGAAGCCATTGACAGACTCATCTATCAGACCGGTGAAGTTCAGGGCTTTCTCATGTTTGTTGTTTCTGCATTTGGTTTAGTGGTTAATATTGCTATGGCAGTCTTGTTGGGTCATGATCACGGCCACGGGCATGATCACGGTCACGGTCATGGTCACGGTCACGGCCACGGTCACCGCCATGGTCACGGTCACGGCCACGACCACGGTCACAGCCATGGTCACGGTCACGGCCACGACCACAGCCATAGTGACCACGATCATGGACACAGTGAACATCATCATAACACTGATAATCATCTCGATCATGAACATGATGACGAGCACCATCATTCTGAGGGAGCAGATCTCACACATCCACTGCTCAATGAAAATACAAGAAAGAACAAGCAACGAAATATCAATGTGCAGGGGGCTTATCTTCATGTACTCGGTGACCTCATTCAAAGTATTGGAGTTATGATAGGTGGAGCAGTTATATGGTACAAGCCAGAATGGAAGATTATTGACTTGATATGCACCCTTGTATTCTCAGTAATTGTGCTGTGGACAACAATCAATATGATGCGCAACATTTTGGAGGTTCTTATGGAGAGCACTCCTAGAGAAATTGATGCCACAAAACTTGAGAGAGGTCTCTGTGAGATGGATGAGGTTGTGGCAGTTCACGAACTACATATTTGGGCCATTACTGTTGGGAAGGTGCTACTGGCTTGCCATGTCATTGCTAAGCCGGATGCAGATACTGACATGGTACTAGAGAAGGTGATAGACTATATCAAGAGGGAATATAACATCACTCATGTCACTATTCAGATAGAGCGTCAGTAG

Protein Analysis

419

Amino Acids

46.59

Weight (kDa)

6.03

Isoelectric Point (pI)

21.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_efflux PF01545 58 - 340 8.3e-35 Cation efflux transmembrane domain
ZT_dimer PF16916 344 - 418 3.2e-12 Cation efflux protein, cytoplasmic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 998
AccI GTMKAC 1 cut(s) 429
AciI CCGC 2 cut(s) 166, 607
AclWI GGATC 3 cut(s) 113, 415, 428
AcoI YGGCCR 4 cut(s) 553, 595, 625, 661
AcuI CTGAAG 2 cut(s) 117, 346
AdeI CACNNNGTG 1 cut(s) 107
AfaI GTAC 4 cut(s) 382, 858, 914, 1185
AgeI ACCGGT 1 cut(s) 461
AgsI TTSAA 3 cut(s) 38, 371, 875
AluBI AGCT 3 cut(s) 72, 172, 266
AluI AGCT 3 cut(s) 72, 172, 266
Alw21I GWGCWC 3 cut(s) 192, 756, 1028
Alw26I GTCTC 1 cut(s) 1070
AlwI GGATC 3 cut(s) 113, 415, 428
AlwNI CAGNNNCTG 1 cut(s) 1175
AoxI GGCC 5 cut(s) 553, 595, 625, 661, 1113
ApeKI GCWGC 2 cut(s) 263, 287
AsiGI ACCGGT 1 cut(s) 461
AspLEI GCGC 2 cut(s) 10, 999
AspS9I GGNCC 1 cut(s) 1113
AsuHPI GGTGA 4 cut(s) 476, 596, 875, 1207
BaeI ACNNNNGTAYC 2 cut(s) 372, 405
BamHI GGATCC 1 cut(s) 420
Bbv12I GWGCWC 3 cut(s) 192, 756, 1028
BbvI GCAGC 2 cut(s) 275, 299
BccI CCATC 4 cut(s) 321, 401, 765, 1069
BceAI ACGGC 4 cut(s) 568, 610, 640, 676
BclI TGATCA 2 cut(s) 547, 565
BcoDI GTCTC 1 cut(s) 1070
BfaI CTAG 2 cut(s) 1032, 1187
BglII AGATCT 1 cut(s) 775
BisI GCNGC 2 cut(s) 264, 288
BlpI GCTNAGC 1 cut(s) 1158
BlsI GCNGC 2 cut(s) 265, 289
BmgT120I GGNCC 1 cut(s) 1113
BmiI GGNNCC 1 cut(s) 422
BmsI GCATC 7 cut(s) 130, 167, 250, 329, 984, 1033, 1156
BoxI GACNNNNGTC 1 cut(s) 636
BplI GAGNNNNNCTC 2 cut(s) 762, 794
Bpu10I CCTNAGC 1 cut(s) 144
Bpu1102I GCTNAGC 1 cut(s) 1158
BpuEI CTTGAG 1 cut(s) 1076
BsaBI GATNNNNATC 1 cut(s) 726
BsaI GGTCTC 1 cut(s) 1070
BsaJI CCNNGG 5 cut(s) 556, 598, 610, 634, 646
BsaWI WCCGGW 1 cut(s) 461
Bse118I RCCGGY 1 cut(s) 461
Bse1I ACTGG 1 cut(s) 1143
Bse3DI GCAATG 1 cut(s) 1152
Bse8I GATNNNNATC 1 cut(s) 726
BseDI CCNNGG 5 cut(s) 556, 598, 610, 634, 646
BseGI GGATG 5 cut(s) 332, 393, 784, 1084, 1171
BseJI GATNNNNATC 1 cut(s) 726
BseMI GCAATG 1 cut(s) 1152
BseMII CTCAG 2 cut(s) 756, 975
BseNI ACTGG 1 cut(s) 1143
BseXI GCAGC 2 cut(s) 275, 299
BsgI GTGCAG 1 cut(s) 857
BshFI GGCC 5 cut(s) 555, 597, 627, 663, 1115
BshTI ACCGGT 1 cut(s) 461
BsiHKAI GWGCWC 3 cut(s) 192, 756, 1028
BsiSI CCGG 2 cut(s) 462, 1163
BsmAI GTCTC 1 cut(s) 1070
BsnI GGCC 5 cut(s) 555, 597, 627, 663, 1115
Bso31I GGTCTC 1 cut(s) 1070
Bsp1286I GDGCHC 3 cut(s) 192, 756, 1028
Bsp143I GATC 7 cut(s) 118, 420, 547, 565, 688, 733, 775
Bsp1720I GCTNAGC 1 cut(s) 1158
Bsp19I CCATGG 2 cut(s) 610, 646
BspACI CCGC 2 cut(s) 166, 607
BspANI GGCC 5 cut(s) 555, 597, 627, 663, 1115
BspCNI CTCAG 2 cut(s) 757, 974
BspHI TCATGA 3 cut(s) 204, 544, 736
BspLI GGNNCC 1 cut(s) 422
BspPI GGATC 3 cut(s) 113, 415, 428
BspTNI GGTCTC 1 cut(s) 1070
BsrDI GCAATG 1 cut(s) 1152
BsrFI RCCGGY 1 cut(s) 461
BsrI ACTGG 1 cut(s) 1143
BssAI RCCGGY 1 cut(s) 461
BssECI CCNNGG 5 cut(s) 556, 598, 610, 634, 646
BssMI GATC 7 cut(s) 118, 420, 547, 565, 688, 733, 775
BssNAI GTATAC 1 cut(s) 430
BssT1I CCWWGG 2 cut(s) 610, 646
Bst1107I GTATAC 1 cut(s) 430
BstAPI GCANNNNNTGC 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 74, 1144
BstDEI CTNAG 4 cut(s) 144, 765, 961, 1158
BstDSI CCRYGG 5 cut(s) 556, 598, 610, 634, 646
BstEII GGTNACC 2 cut(s) 602, 863
BstF5I GGATG 5 cut(s) 332, 393, 784, 1084, 1171
BstHHI GCGC 2 cut(s) 10, 999
BstKTI GATC 7 cut(s) 121, 423, 550, 568, 691, 736, 778
BstMAI GTCTC 1 cut(s) 1070
BstMBI GATC 7 cut(s) 118, 420, 547, 565, 688, 733, 775
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstPAI GACNNNNGTC 1 cut(s) 636
BstPI GGTNACC 2 cut(s) 602, 863
BstV1I GCAGC 2 cut(s) 275, 299
BstX2I RGATCY 3 cut(s) 118, 420, 775
BstXI CCANNNNNNTGG 2 cut(s) 353, 692
BstYI RGATCY 3 cut(s) 118, 420, 775
BstZ17I GTATAC 1 cut(s) 430
BsuRI GGCC 5 cut(s) 555, 597, 627, 663, 1115
BtgI CCRYGG 5 cut(s) 556, 598, 610, 634, 646
BtsCI GGATG 5 cut(s) 332, 393, 784, 1084, 1171
BtsI GCAGTG 1 cut(s) 788
BtsIMutI CAGTG 4 cut(s) 311, 706, 717, 788
Cac8I GCNNGC 2 cut(s) 74, 1144
CaiI CAGNNNCTG 1 cut(s) 1175
CciI TCATGA 3 cut(s) 204, 544, 736
CfoI GCGC 2 cut(s) 10, 999
Cfr10I RCCGGY 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 1113
CseI GACGC 1 cut(s) 1241
Csp6I GTAC 4 cut(s) 381, 857, 913, 1184
CspAI ACCGGT 1 cut(s) 461
CspCI CAANNNNNGTGG 2 cut(s) 1036, 1071
CviQI GTAC 4 cut(s) 381, 857, 913, 1184
DdeI CTNAG 4 cut(s) 144, 765, 961, 1158
DpnI GATC 7 cut(s) 120, 422, 549, 567, 690, 735, 777
DpnII GATC 7 cut(s) 118, 420, 547, 565, 688, 733, 775
DraIII CACNNNGTG 1 cut(s) 107
EaeI YGGCCR 4 cut(s) 553, 595, 625, 661
Eco130I CCWWGG 2 cut(s) 610, 646
Eco31I GGTCTC 1 cut(s) 1070
Eco57I CTGAAG 2 cut(s) 117, 346
Eco91I GGTNACC 2 cut(s) 602, 863
EcoO65I GGTNACC 2 cut(s) 602, 863
EcoT14I CCWWGG 2 cut(s) 610, 646
ErhI CCWWGG 2 cut(s) 610, 646
FbaI TGATCA 2 cut(s) 547, 565
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 2 cut(s) 264, 288
FokI GGATG 5 cut(s) 339, 380, 771, 1091, 1178
Fsp4HI GCNGC 2 cut(s) 264, 288
FspBI CTAG 2 cut(s) 1032, 1187
FspI TGCGCA 1 cut(s) 998
GlaI GCGC 2 cut(s) 9, 998
GluI GCNGC 2 cut(s) 264, 288
HaeIII GGCC 5 cut(s) 555, 597, 627, 663, 1115
HapII CCGG 2 cut(s) 462, 1163
HgaI GACGC 1 cut(s) 1241
HhaI GCGC 2 cut(s) 10, 999
Hin6I GCGC 2 cut(s) 8, 997
HinP1I GCGC 2 cut(s) 8, 997
HindIII AAGCTT 2 cut(s) 70, 170
HinfI GANTC 2 cut(s) 65, 447
HpaII CCGG 2 cut(s) 462, 1163
HphI GGTGA 4 cut(s) 476, 596, 875, 1207
Hpy166II GTNNAC 5 cut(s) 383, 430, 704, 978, 1096
Hpy188I TCNGA 6 cut(s) 118, 280, 365, 459, 766, 1245
Hpy188III TCNNGA 9 cut(s) 18, 205, 324, 397, 545, 731, 737, 1097, 1210
Hpy8I GTNNAC 5 cut(s) 383, 430, 704, 978, 1096
HpyAV CCTTC 3 cut(s) 49, 1123, 1186
HpyCH4V TGCA 8 cut(s) 43, 263, 287, 296, 500, 838, 948, 1169
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 4 cut(s) 144, 765, 961, 1158
HspAI GCGC 2 cut(s) 8, 997
Ksp22I TGATCA 2 cut(s) 547, 565
Kzo9I GATC 7 cut(s) 118, 420, 547, 565, 688, 733, 775
LmnI GCTCC 2 cut(s) 770, 899
Lsp1109I GCAGC 2 cut(s) 275, 299
LweI GCATC 7 cut(s) 130, 167, 250, 329, 984, 1033, 1156
MaeI CTAG 2 cut(s) 1032, 1187
MalI GATC 7 cut(s) 120, 422, 549, 567, 690, 735, 777
MboI GATC 7 cut(s) 118, 420, 547, 565, 688, 733, 775
MboII GAAGA 3 cut(s) 352, 842, 940
MflI RGATCY 3 cut(s) 118, 420, 775
MhlI GDGCHC 3 cut(s) 192, 756, 1028
MluCI AATT 4 cut(s) 297, 366, 966, 1038
MlyI GAGTC 2 cut(s) 74, 441
MnlI CCTC 7 cut(s) 325, 760, 878, 1003, 1055, 1075, 1206
MseI TTAA 1 cut(s) 516
MspI CCGG 2 cut(s) 462, 1163
MwoI GCNNNNNNNGC 1 cut(s) 293
NcoI CCATGG 2 cut(s) 610, 646
NdeII GATC 7 cut(s) 118, 420, 547, 565, 688, 733, 775
NlaIV GGNNCC 1 cut(s) 422
NsbI TGCGCA 1 cut(s) 998
PagI TCATGA 3 cut(s) 204, 544, 736
PinAI ACCGGT 1 cut(s) 461
PkrI GCNGC 2 cut(s) 265, 289
PleI GAGTC 2 cut(s) 73, 441
PpsI GAGTC 2 cut(s) 73, 441
PshAI GACNNNNGTC 1 cut(s) 636
PspEI GGTNACC 2 cut(s) 602, 863
PspN4I GGNNCC 1 cut(s) 422
PspPI GGNCC 1 cut(s) 1113
PstNI CAGNNNCTG 1 cut(s) 1175
PsuI RGATCY 3 cut(s) 118, 420, 775
RsaI GTAC 4 cut(s) 382, 858, 914, 1185
RsaNI GTAC 4 cut(s) 381, 857, 913, 1184
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 2 cut(s) 264, 288
Sau3AI GATC 7 cut(s) 118, 420, 547, 565, 688, 733, 775
Sau96I GGNCC 1 cut(s) 1113
SchI GAGTC 2 cut(s) 74, 441
SduI GDGCHC 3 cut(s) 192, 756, 1028
SfaNI GCATC 7 cut(s) 130, 167, 250, 329, 984, 1033, 1156
SmlI CTYRAG 1 cut(s) 1055
SmoI CTYRAG 1 cut(s) 1055
Sse9I AATT 4 cut(s) 297, 366, 966, 1038
SsiI CCGC 2 cut(s) 166, 607
SspI AATATT 1 cut(s) 520
SspMI CTAG 2 cut(s) 1032, 1187
StyI CCWWGG 2 cut(s) 610, 646
TaqI TCGA 1 cut(s) 732
TasI AATT 4 cut(s) 297, 366, 966, 1038
TatI WGTACW 1 cut(s) 856
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TscAI CASTG 4 cut(s) 318, 706, 724, 795
TseI GCWGC 2 cut(s) 263, 287
TspDTI ATGAA 4 cut(s) 193, 753, 813, 842
TspRI CASTG 4 cut(s) 318, 706, 724, 795
XmiI GTMKAC 1 cut(s) 429
XspI CTAG 2 cut(s) 1032, 1187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.