Prupe.5G063300_v2.0.a1

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
7728357 .. 7729679
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G063300.1

Sequence Viewer

Length: 894 bp
ATGGAACTCACAACAATTGGTGAGTGCCATCAAGGATGGAACTCTATCCAGGAGGGGATTATGAATCTAAAGAGGAGAATTGCAGAAGGTATACCAGAGAATCAAGTCAGTGCCGCAGTGAATGTTGATATTTACACCACTATCTATAACATGTGCATTCAAAAACCTCCCCATGATTGTGCTCAGCAGTTATATGACAAATATCAGAAGACATTTGAGGAACACATTACTTCAACCGTATTGCCCTTTTTGAAAGCGAAGCATGACGAGTTTCTGTTGCGGGATTTTGTTAAAAGTTGGGAAGATCATAAGGTTATGCTTCGGTGGATGTCCCGCGCCTTTGCATATCTTGATTGCTTCTTCATCCGTCAGAGAAGGCTTCCTTGCCTAAAGGAAGCTGCAATTATCTGCTACCGCAATTTGGTTTACCGGGAGGTAAATGCTAACGTGAGAGAAGCTGCAATTCGTCTTATTGACGAGGAACGCGAGGGAGGAGAAATTGACAGAGCACTATTGAAGAATGTGACAGATATATTTGTTGAAATTGGAGTGGGACAAATGGATGCGTACGAAAATGACTTCGAAGGATACATGCTAAACGATACTCGTGATTACTATTCTCGTAGAGCATCAAGATGGATGTTGGAGGACAGTTATACGAGTTACACGTTGAAGGCAGAGGCATGCTTGAGAAGAGAGAGGGATATAGTTTCTCATTACCTGCATCCAATAAGTGAGCAGAAACTGGTGGCAATAGTGGAACATGAGTTGTTGGTGTTTTATAAAACTCAACTGACTGAAAAGAAGCATTCTGATTCTGGATCTAGTGCTTTCCCTGGAGATGATAATGTGGAGTATCTTTCTAGGAAGCTTGCAGCTAATGGAATTCTGTAA

Protein Analysis

298

Amino Acids

34.73

Weight (kDa)

5.67

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 783
Acc36I ACCTGC 1 cut(s) 729
AccI GTMKAC 1 cut(s) 91
AccII CGCG 2 cut(s) 336, 486
AciI CCGC 4 cut(s) 114, 280, 334, 415
AclWI GGATC 1 cut(s) 829
AcsI RAATTY 1 cut(s) 885
AfaI GTAC 1 cut(s) 569
AfiI CCNNNNNNNGG 1 cut(s) 421
AflIII ACRYGT 2 cut(s) 150, 666
AgsI TTSAA 6 cut(s) 161, 234, 253, 517, 542, 673
AjnI CCWGG 2 cut(s) 48, 835
AluBI AGCT 4 cut(s) 398, 458, 871, 878
AluI AGCT 4 cut(s) 398, 458, 871, 878
Alw21I GWGCWC 2 cut(s) 184, 511
AlwI GGATC 1 cut(s) 829
AlwNI CAGNNNCTG 1 cut(s) 745
ApeKI GCWGC 3 cut(s) 398, 458, 875
ApoI RAATTY 1 cut(s) 885
AspLEI GCGC 1 cut(s) 338
AsuC2I CCSGG 1 cut(s) 431
AsuHPI GGTGA 1 cut(s) 32
AsuII TTCGAA 1 cut(s) 582
BauI CACGAG 1 cut(s) 606
BbsI GAAGAC 1 cut(s) 215
Bbv12I GWGCWC 2 cut(s) 184, 511
BbvI GCAGC 3 cut(s) 385, 445, 887
BccI CCATC 3 cut(s) 30, 36, 630
BciT130I CCWGG 2 cut(s) 50, 837
BciVI GTATCC 1 cut(s) 581
BcnI CCSGG 1 cut(s) 431
BfaI CTAG 2 cut(s) 825, 864
BfuAI ACCTGC 1 cut(s) 729
BfuI GTATCC 1 cut(s) 581
BisI GCNGC 4 cut(s) 114, 399, 459, 876
BlpI GCTNAGC 1 cut(s) 183
BlsI GCNGC 4 cut(s) 115, 400, 460, 877
Bme1390I CCNGG 3 cut(s) 50, 431, 837
BmrFI CCNGG 3 cut(s) 50, 431, 837
BmsI GCATC 3 cut(s) 553, 638, 733
BpiI GAAGAC 1 cut(s) 215
BpmI CTGGAG 1 cut(s) 858
Bpu1102I GCTNAGC 1 cut(s) 183
Bpu14I TTCGAA 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 709
BpuMI CCSGG 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 835
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse1I ACTGG 1 cut(s) 750
BseBI CCWGG 2 cut(s) 50, 837
BseDI CCNNGG 1 cut(s) 835
BseGI GGATG 6 cut(s) 41, 333, 363, 568, 645, 724
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 750
BseRI GAGGAG 2 cut(s) 88, 507
BseXI GCAGC 3 cut(s) 385, 445, 887
Bsh1236I CGCG 2 cut(s) 336, 486
BsiHKAI GWGCWC 2 cut(s) 184, 511
BsiSI CCGG 1 cut(s) 430
BsiWI CGTACG 1 cut(s) 567
BslFI GGGAC 2 cut(s) 316, 567
BslI CCNNNNNNNGG 1 cut(s) 421
BsmFI GGGAC 2 cut(s) 316, 567
BsmI GAATGC 2 cut(s) 156, 808
Bsp119I TTCGAA 1 cut(s) 582
Bsp1286I GDGCHC 2 cut(s) 184, 511
Bsp143I GATC 2 cut(s) 304, 821
Bsp1720I GCTNAGC 1 cut(s) 183
BspACI CCGC 4 cut(s) 114, 280, 334, 415
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 2 cut(s) 336, 486
BspMI ACCTGC 1 cut(s) 729
BspPI GGATC 1 cut(s) 829
BspT104I TTCGAA 1 cut(s) 582
BsrI ACTGG 1 cut(s) 750
BssECI CCNNGG 1 cut(s) 835
BssMI GATC 2 cut(s) 304, 821
BssNAI GTATAC 1 cut(s) 92
BssSI CACGAG 1 cut(s) 606
Bst1107I GTATAC 1 cut(s) 92
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 2 cut(s) 50, 837
Bst4CI ACNGT 2 cut(s) 238, 653
Bst6I CTCTTC 1 cut(s) 688
BstBI TTCGAA 1 cut(s) 582
BstC8I GCNNGC 2 cut(s) 685, 873
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 6 cut(s) 41, 333, 363, 568, 645, 724
BstFNI CGCG 2 cut(s) 336, 486
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 2 cut(s) 307, 824
BstMBI GATC 2 cut(s) 304, 821
BstNI CCWGG 2 cut(s) 50, 837
BstNSI RCATGY 3 cut(s) 154, 595, 687
BstSCI CCNGG 3 cut(s) 48, 429, 835
BstUI CGCG 2 cut(s) 336, 486
BstV1I GCAGC 3 cut(s) 385, 445, 887
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 821
BstYI RGATCY 1 cut(s) 821
BstZ17I GTATAC 1 cut(s) 92
BsuI GTATCC 1 cut(s) 581
BtsCI GGATG 6 cut(s) 41, 333, 363, 568, 645, 724
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 115, 123
BveI ACCTGC 1 cut(s) 729
Cac8I GCNNGC 2 cut(s) 685, 873
CaiI CAGNNNCTG 1 cut(s) 745
CfoI GCGC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 568
CviAII CATG 6 cut(s) 151, 173, 263, 592, 684, 764
CviJI RGCY 5 cut(s) 379, 398, 458, 871, 878
CviKI_1 RGCY 5 cut(s) 379, 398, 458, 871, 878
CviQI GTAC 1 cut(s) 568
DdeI CTNAG 1 cut(s) 183
DpnI GATC 2 cut(s) 306, 823
DpnII GATC 2 cut(s) 304, 821
Eam1104I CTCTTC 1 cut(s) 688
EarI CTCTTC 1 cut(s) 688
EcoRI GAATTC 1 cut(s) 885
EcoRII CCWGG 2 cut(s) 48, 835
FaeI CATG 6 cut(s) 154, 176, 266, 595, 687, 767
FalI AAGNNNNNCTT 2 cut(s) 367, 399
FaqI GGGAC 2 cut(s) 316, 567
FatI CATG 6 cut(s) 150, 172, 262, 591, 683, 763
FauI CCCGC 2 cut(s) 273, 341
FblI GTMKAC 1 cut(s) 91
Fnu4HI GCNGC 4 cut(s) 114, 399, 459, 876
FokI GGATG 6 cut(s) 48, 340, 350, 575, 652, 711
Fsp4HI GCNGC 4 cut(s) 114, 399, 459, 876
FspBI CTAG 2 cut(s) 825, 864
GlaI GCGC 1 cut(s) 337
GluI GCNGC 4 cut(s) 114, 399, 459, 876
GsuI CTGGAG 1 cut(s) 858
HapII CCGG 1 cut(s) 430
HhaI GCGC 1 cut(s) 338
Hin1II CATG 6 cut(s) 154, 176, 266, 595, 687, 767
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HindIII AAGCTT 1 cut(s) 869
HinfI GANTC 3 cut(s) 64, 100, 815
HpaII CCGG 1 cut(s) 430
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 2 cut(s) 92, 427
Hpy188I TCNGA 3 cut(s) 207, 372, 814
Hpy188III TCNNGA 4 cut(s) 350, 608, 633, 819
Hpy8I GTNNAC 2 cut(s) 92, 427
HpyAV CCTTC 4 cut(s) 80, 369, 578, 667
HpyCH4III ACNGT 2 cut(s) 238, 653
HpyCH4IV ACGT 2 cut(s) 447, 668
HpyCH4V TGCA 7 cut(s) 83, 156, 344, 401, 461, 724, 875
HpyF3I CTNAG 1 cut(s) 183
HpySE526I ACGT 2 cut(s) 447, 668
Hsp92II CATG 6 cut(s) 154, 176, 266, 595, 687, 767
HspAI GCGC 1 cut(s) 336
Kzo9I GATC 2 cut(s) 304, 821
LpnPI CCDG 9 cut(s) 35, 62, 108, 443, 731, 734, 804, 822, 849
Lsp1109I GCAGC 3 cut(s) 385, 445, 887
LweI GCATC 3 cut(s) 553, 638, 733
MaeI CTAG 2 cut(s) 825, 864
MaeII ACGT 2 cut(s) 447, 668
MaeIII GTNAC 2 cut(s) 523, 662
MalI GATC 2 cut(s) 306, 823
MboI GATC 2 cut(s) 304, 821
MboII GAAGA 5 cut(s) 220, 314, 352, 529, 705
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 1 cut(s) 821
MhlI GDGCHC 2 cut(s) 184, 511
MluCI AATT 8 cut(s) 15, 78, 402, 418, 462, 498, 543, 885
MmeI TCCRAC 1 cut(s) 624
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 2 cut(s) 177, 634
MspI CCGG 1 cut(s) 430
MspR9I CCNGG 3 cut(s) 50, 431, 837
MunI CAATTG 1 cut(s) 15
Mva1269I GAATGC 2 cut(s) 156, 808
MvaI CCWGG 2 cut(s) 50, 837
MvnI CGCG 2 cut(s) 336, 486
NciI CCSGG 1 cut(s) 431
NdeII GATC 2 cut(s) 304, 821
NlaIII CATG 6 cut(s) 154, 176, 266, 595, 687, 767
NmuCI GTSAC 1 cut(s) 523
NspI RCATGY 3 cut(s) 154, 595, 687
NspV TTCGAA 1 cut(s) 582
PaeI GCATGC 1 cut(s) 687
PciI ACATGT 1 cut(s) 150
PcsI WCGNNNNNNNCGW 2 cut(s) 483, 665
PctI GAATGC 2 cut(s) 156, 808
PfeI GAWTC 3 cut(s) 64, 100, 815
Pfl23II CGTACG 1 cut(s) 567
PfoI TCCNGGA 1 cut(s) 48
PkrI GCNGC 4 cut(s) 115, 400, 460, 877
PscI ACATGT 1 cut(s) 150
PsiI TTATAA 1 cut(s) 783
Psp6I CCWGG 2 cut(s) 48, 835
PspGI CCWGG 2 cut(s) 48, 835
PspLI CGTACG 1 cut(s) 567
PstNI CAGNNNCTG 1 cut(s) 745
PsuI RGATCY 1 cut(s) 821
RsaI GTAC 1 cut(s) 569
RsaNI GTAC 1 cut(s) 568
RseI CAYNNNNRTG 2 cut(s) 177, 634
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 4 cut(s) 114, 399, 459, 876
Sau3AI GATC 2 cut(s) 304, 821
ScrFI CCNGG 3 cut(s) 50, 431, 837
SduI GDGCHC 2 cut(s) 184, 511
SfaNI GCATC 3 cut(s) 553, 638, 733
SfuI TTCGAA 1 cut(s) 582
SmiMI CAYNNNNRTG 2 cut(s) 177, 634
SmlI CTYRAG 1 cut(s) 688
SmoI CTYRAG 1 cut(s) 688
SphI GCATGC 1 cut(s) 687
Sse9I AATT 8 cut(s) 15, 78, 402, 418, 462, 498, 543, 885
SsiI CCGC 4 cut(s) 114, 280, 334, 415
SspMI CTAG 2 cut(s) 825, 864
StyD4I CCNGG 3 cut(s) 48, 429, 835
TaaI ACNGT 2 cut(s) 238, 653
TaiI ACGT 2 cut(s) 450, 671
TaqI TCGA 1 cut(s) 582
TasI AATT 8 cut(s) 15, 78, 402, 418, 462, 498, 543, 885
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 3 cut(s) 64, 100, 815
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 2 cut(s) 115, 123
TseFI GTSAC 1 cut(s) 523
TseI GCWGC 3 cut(s) 398, 458, 875
Tsp45I GTSAC 1 cut(s) 523
TspDTI ATGAA 2 cut(s) 77, 352
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 2 cut(s) 115, 123
XapI RAATTY 1 cut(s) 885
XceI RCATGY 3 cut(s) 154, 595, 687
XmiI GTMKAC 1 cut(s) 91
XspI CTAG 2 cut(s) 825, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.