Rmu_sc0000423.1_g000006

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000423.1
Physical Location & Seq
Reverse (-)
15323 .. 16054
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000423.1_g000006.1.cds

Sequence Viewer

Length: 732 bp
atgttcagagtacatgttgaagacagaggaatgcagaaggaaaaggagagggcttctcattacttgtattcgaccagtgagccgaagctgttggtgaaagtgcagcatgagttgttggtggtttattacacccaaatccttgataaggaggaatctggaagtcgggttttgcttcaaaatgataaggtggaggatttgtctagtatatataggctctaccttaatatacctataggcttggaacctgttgctagcatattcagagagcatgttactaatgaaggtaaagccttggtccaacaggctgaagaggctgttgcaagtagtaatcagcaggcttcaagtggagctgaacaatatggacttgtgcttatccaaaaactaatagagctgcatgacaagtatttaggatatgtgactggttgctttatgaaccattcactctttcacaaggctctgaagcaagcttttgaggtggtttgcgataaatctattgtcgggagttctagtgccaaaatgcttgctgctttctgtgataatatcctcaaaatggctggaagtaagctgagcgaggaggctgtagaagaaaccctagaaaaggttgttactctacttgtttatatcagtgacaaagacctctttctgagttctgcaggaaaaaacttgcccgtaggctgcttttcattcggagtgggagtgggagtactgaagacagtgagaaaagtcttctga

Protein Analysis

243

Amino Acids

27.06

Weight (kDa)

6.18

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 3 cut(s) 327, 479, 728
AfaI GTAC 2 cut(s) 12, 705
AfiI CCNNNNNNNGG 3 cut(s) 145, 550, 598
AflIII ACRYGT 1 cut(s) 13
AgsI TTSAA 3 cut(s) 20, 176, 342
AluBI AGCT 5 cut(s) 88, 350, 391, 467, 565
AluI AGCT 5 cut(s) 88, 350, 391, 467, 565
ApeKI GCWGC 4 cut(s) 103, 391, 524, 675
AspS9I GGNCC 1 cut(s) 295
AsuHPI GGTGA 1 cut(s) 106
AsuNHI GCTAGC 1 cut(s) 251
AvaII GGWCC 1 cut(s) 295
BbsI GAAGAC 3 cut(s) 27, 716, 718
BbvI GCAGC 4 cut(s) 115, 378, 511, 662
BfaI CTAG 4 cut(s) 201, 252, 507, 593
BfmI CTRYAG 3 cut(s) 231, 579, 651
BisI GCNGC 4 cut(s) 104, 392, 525, 676
BlpI GCTNAGC 1 cut(s) 566
BlsI GCNGC 4 cut(s) 105, 393, 526, 677
BmcAI AGTACT 1 cut(s) 705
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 243
BmtI GCTAGC 1 cut(s) 255
BpiI GAAGAC 3 cut(s) 27, 716, 718
BplI GAGNNNNNCTC 2 cut(s) 40, 72
Bpu1102I GCTNAGC 1 cut(s) 566
BsaJI CCNNGG 1 cut(s) 291
BsaXI ACNNNNNCTCC 8 cut(s) 182, 212, 493, 523, 681, 687, 711, 717
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 550, 598
Bse1I ACTGG 2 cut(s) 75, 424
BseDI CCNNGG 1 cut(s) 291
BseLI CCNNNNNNNGG 3 cut(s) 145, 550, 598
BseMII CTCAG 2 cut(s) 557, 635
BseNI ACTGG 2 cut(s) 75, 424
BseRI GAGGAG 1 cut(s) 587
BseXI GCAGC 4 cut(s) 115, 378, 511, 662
BsgI GTGCAG 1 cut(s) 122
BslI CCNNNNNNNGG 3 cut(s) 145, 550, 598
BsmI GAATGC 1 cut(s) 36
Bsp1720I GCTNAGC 1 cut(s) 566
BspCNI CTCAG 2 cut(s) 558, 636
BspLI GGNNCC 1 cut(s) 243
BspMAI CTGCAG 1 cut(s) 655
BspOI GCTAGC 1 cut(s) 255
BsrI ACTGG 2 cut(s) 75, 424
BssECI CCNNGG 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 715
Bst6I CTCTTC 1 cut(s) 303
BstC8I GCNNGC 4 cut(s) 253, 336, 465, 522
BstDEI CTNAG 2 cut(s) 566, 644
BstENI CCTNNNNNAGG 2 cut(s) 143, 596
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNSI RCATGY 2 cut(s) 17, 272
BstSFI CTRYAG 3 cut(s) 231, 579, 651
BstV1I GCAGC 4 cut(s) 115, 378, 511, 662
BstV2I GAAGAC 3 cut(s) 27, 716, 718
BtsIMutI CAGTG 3 cut(s) 82, 631, 720
Cac8I GCNNGC 4 cut(s) 253, 336, 465, 522
Cfr13I GGNCC 1 cut(s) 295
Csp6I GTAC 2 cut(s) 11, 704
CviAII CATG 4 cut(s) 14, 107, 269, 395
CviQI GTAC 2 cut(s) 11, 704
DdeI CTNAG 2 cut(s) 566, 644
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 295
Eco57I CTGAAG 3 cut(s) 327, 479, 728
EcoNI CCTNNNNNAGG 2 cut(s) 143, 596
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 4 cut(s) 17, 110, 272, 398
FatI CATG 4 cut(s) 13, 106, 268, 394
Fnu4HI GCNGC 4 cut(s) 104, 392, 525, 676
Fsp4HI GCNGC 4 cut(s) 104, 392, 525, 676
FspBI CTAG 4 cut(s) 201, 252, 507, 593
GluI GCNGC 4 cut(s) 104, 392, 525, 676
Hin1II CATG 4 cut(s) 17, 110, 272, 398
HindIII AAGCTT 1 cut(s) 465
HinfI GANTC 1 cut(s) 152
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 6 cut(s) 8, 263, 459, 645, 689, 731
Hpy188III TCNNGA 2 cut(s) 156, 499
HpyAV CCTTC 2 cut(s) 31, 275
HpyCH4III ACNGT 1 cut(s) 715
HpyCH4V TGCA 5 cut(s) 34, 103, 320, 394, 653
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 2 cut(s) 566, 644
Hsp92II CATG 4 cut(s) 17, 110, 272, 398
LmnI GCTCC 1 cut(s) 347
LpnPI CCDG 8 cut(s) 88, 141, 258, 287, 320, 405, 540, 639
Lsp1109I GCAGC 4 cut(s) 115, 378, 511, 662
MaeI CTAG 4 cut(s) 201, 252, 507, 593
MaeIII GTNAC 4 cut(s) 271, 415, 604, 626
MboII GAAGA 5 cut(s) 32, 320, 596, 718, 721
MmeI TCCRAC 1 cut(s) 322
MseI TTAA 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 311
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 4 cut(s) 17, 110, 272, 398
NlaIV GGNNCC 1 cut(s) 243
NmuCI GTSAC 2 cut(s) 415, 626
NspI RCATGY 2 cut(s) 17, 272
PciI ACATGT 1 cut(s) 13
PctI GAATGC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 4 cut(s) 105, 393, 526, 677
PscI ACATGT 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 1 cut(s) 295
PstI CTGCAG 1 cut(s) 655
RsaI GTAC 2 cut(s) 12, 705
RsaNI GTAC 2 cut(s) 11, 704
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 4 cut(s) 104, 392, 525, 676
Sau96I GGNCC 1 cut(s) 295
ScaI AGTACT 1 cut(s) 705
SfcI CTRYAG 3 cut(s) 231, 579, 651
SinI GGWCC 1 cut(s) 295
SspMI CTAG 4 cut(s) 201, 252, 507, 593
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 715
TaqI TCGA 1 cut(s) 71
TatI WGTACW 2 cut(s) 10, 703
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 3 cut(s) 82, 631, 720
TseFI GTSAC 2 cut(s) 415, 626
TseI GCWGC 4 cut(s) 103, 391, 524, 675
Tsp45I GTSAC 2 cut(s) 415, 626
TspDTI ATGAA 3 cut(s) 294, 446, 672
TspRI CASTG 3 cut(s) 82, 631, 720
VpaK11BI GGWCC 1 cut(s) 295
XagI CCTNNNNNAGG 2 cut(s) 143, 596
XceI RCATGY 2 cut(s) 17, 272
XspI CTAG 4 cut(s) 201, 252, 507, 593
ZrmI AGTACT 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.