RLG00000024118

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
32091825 .. 32093016
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024118

Sequence Viewer

Length: 789 bp
ATGCAGAAGGAGAGGGAGAGGGCTTCTCAATACTTCTATTCGACCAGTGAGCCGAAGCTGTTGGAGAAAGTGCAGCATGAGTTGTTGGTGGTTTATGACACCCAAATCCTTGATAAGGAGGAATCTGGATGCCGGGTTTTGCTTCAGAACGATAAGGTGGAGGATTTGTCTAGGATATATAGGCTCTACGTGGCTAGCGTATTCAGAGAGCATGTTACTAATGAAGGTAAAGCCTTGGTCCAACAGGCTGGAGGCTGTTGCAAGAAAAAACTTGCCCGTAGGCTGCTTTTCATTCGGAGTGGGAGTACTGAAGACCGTGAGAAAAGTCTTCTGACAAAGCTGAAGCAGCAATGTGGTGGACAATTCACCTCCAAGATGGAAGGAATGATCACCGATTTGACATTCATCCTAGAAAAGAATCGAAATCCCGGGCTCAATTTGTCAGTCCAGGTTCTCACAACCGGTTACTGGCCAAGTTACAAATCGTCTGATCTCAACCTTCCTGAAGAGATGGAATACCAGCGCAGAAAGCTGTCATGGATATACTCACTGGGTCCTTCCAACGTCATCGAGGGCAAGTTTGATTCGAAAACCATAGAACTGGTTGAGACAACTCATCAGGCTGCTCTCCTGCTCTTTAACAATGCCGAGAAGTTGAGCTTTTCAGAAATCTCAACTCAGCTAAATCTAACCAAAGACGAGTTGATTAGACTTGCTTCATTCTCTTTCATGTGCGAAGTACAAGATCCTTCTCAAGGAGCCAAGTACAAAGACTATCTCGCAGAGTGA

Protein Analysis

263

Amino Acids

30.12

Weight (kDa)

6.85

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cullin PF00888 2 - 82 7.2e-09 Cullin alpha solenoid domain
Cullin PF00888 88 - 134 6.6e-14 Cullin alpha solenoid domain
Cullin_AB PF26557 151 - 237 4.6e-12 Cullin alpha+beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 740
AcoI YGGCCR 1 cut(s) 470
AcuI CTGAAG 4 cut(s) 128, 330, 362, 525
AfaI GTAC 3 cut(s) 307, 741, 767
AfiI CCNNNNNNNGG 3 cut(s) 115, 468, 755
AgeI ACCGGT 1 cut(s) 461
AjnI CCWGG 1 cut(s) 447
AluBI AGCT 5 cut(s) 58, 340, 532, 660, 682
AluI AGCT 5 cut(s) 58, 340, 532, 660, 682
Alw26I GTCTC 1 cut(s) 602
AlwI GGATC 1 cut(s) 740
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 1 cut(s) 470
ApeKI GCWGC 4 cut(s) 73, 283, 346, 623
AsiGI ACCGGT 1 cut(s) 461
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 2 cut(s) 238, 554
AsuC2I CCSGG 3 cut(s) 134, 429, 430
AsuHPI GGTGA 2 cut(s) 358, 382
AsuII TTCGAA 1 cut(s) 587
AsuNHI GCTAGC 1 cut(s) 194
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 2 cut(s) 238, 554
BalI TGGCCA 1 cut(s) 472
BanII GRGCYC 1 cut(s) 435
BbsI GAAGAC 2 cut(s) 318, 320
BbvI GCAGC 4 cut(s) 85, 270, 358, 610
BccI CCATC 2 cut(s) 370, 505
BciT130I CCWGG 1 cut(s) 449
BclI TGATCA 1 cut(s) 387
BcnI CCSGG 3 cut(s) 134, 429, 430
BcoDI GTCTC 1 cut(s) 602
BfaI CTAG 3 cut(s) 171, 195, 410
BisI GCNGC 4 cut(s) 74, 284, 347, 624
BlsI GCNGC 4 cut(s) 75, 285, 348, 625
BmcAI AGTACT 1 cut(s) 307
Bme1390I CCNGG 4 cut(s) 134, 429, 430, 449
Bme18I GGWCC 2 cut(s) 238, 554
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 2 cut(s) 238, 554
BmiI GGNNCC 2 cut(s) 555, 760
BmrFI CCNGG 4 cut(s) 134, 429, 430, 449
BmrI ACTGGG 1 cut(s) 560
BmsI GCATC 1 cut(s) 119
BmtI GCTAGC 1 cut(s) 198
BmuI ACTGGG 1 cut(s) 560
BpiI GAAGAC 2 cut(s) 318, 320
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpmI CTGGAG 1 cut(s) 270
Bpu14I TTCGAA 1 cut(s) 587
BpuEI CTTGAG 1 cut(s) 738
BpuMI CCSGG 3 cut(s) 134, 429, 430
BsaAI YACGTR 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 234, 428
BsaWI WCCGGW 1 cut(s) 461
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 289, 319
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 468, 755
Bse118I RCCGGY 1 cut(s) 461
Bse1I ACTGG 4 cut(s) 45, 473, 555, 606
Bse3DI GCAATG 1 cut(s) 356
BseBI CCWGG 1 cut(s) 449
BseDI CCNNGG 2 cut(s) 234, 428
BseGI GGATG 2 cut(s) 134, 405
BseLI CCNNNNNNNGG 3 cut(s) 115, 468, 755
BseMI GCAATG 1 cut(s) 356
BseMII CTCAG 1 cut(s) 692
BseNI ACTGG 4 cut(s) 45, 473, 555, 606
BseXI GCAGC 4 cut(s) 85, 270, 358, 610
BsgI GTGCAG 1 cut(s) 92
BshFI GGCC 1 cut(s) 472
BshTI ACCGGT 1 cut(s) 461
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 3 cut(s) 133, 429, 462
BslI CCNNNNNNNGG 3 cut(s) 115, 468, 755
BsmAI GTCTC 1 cut(s) 602
BsnI GGCC 1 cut(s) 472
BsoBI CYCGRG 1 cut(s) 428
Bsp119I TTCGAA 1 cut(s) 587
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 3 cut(s) 387, 490, 745
BspANI GGCC 1 cut(s) 472
BspCNI CTCAG 1 cut(s) 691
BspLI GGNNCC 2 cut(s) 555, 760
BspOI GCTAGC 1 cut(s) 198
BspPI GGATC 1 cut(s) 740
BspT104I TTCGAA 1 cut(s) 587
BsrDI GCAATG 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 461
BsrI ACTGG 4 cut(s) 45, 473, 555, 606
BssAI RCCGGY 1 cut(s) 461
BssECI CCNNGG 2 cut(s) 234, 428
BssMI GATC 3 cut(s) 387, 490, 745
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 449
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 1 cut(s) 501
BstBAI YACGTR 1 cut(s) 190
BstBI TTCGAA 1 cut(s) 587
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 678
BstENI CCTNNNNNAGG 2 cut(s) 113, 753
BstF5I GGATG 2 cut(s) 134, 405
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 3 cut(s) 390, 493, 748
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 3 cut(s) 387, 490, 745
BstMWI GCNNNNNNNGC 2 cut(s) 346, 529
BstNI CCWGG 1 cut(s) 449
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 4 cut(s) 132, 427, 428, 447
BstV1I GCAGC 4 cut(s) 85, 270, 358, 610
BstV2I GAAGAC 2 cut(s) 318, 320
BstX2I RGATCY 1 cut(s) 745
BstXI CCANNNNNNTGG 2 cut(s) 248, 601
BstYI RGATCY 1 cut(s) 745
BsuRI GGCC 1 cut(s) 472
BtsCI GGATG 2 cut(s) 134, 405
BtsIMutI CAGTG 2 cut(s) 52, 548
Cac8I GCNNGC 1 cut(s) 196
CfoI GCGC 1 cut(s) 525
Cfr10I RCCGGY 1 cut(s) 461
Cfr13I GGNCC 2 cut(s) 238, 554
Cfr9I CCCGGG 1 cut(s) 428
Csp6I GTAC 3 cut(s) 306, 740, 766
CspAI ACCGGT 1 cut(s) 461
CviAII CATG 4 cut(s) 77, 212, 537, 730
CviQI GTAC 3 cut(s) 306, 740, 766
DdeI CTNAG 1 cut(s) 678
DpnI GATC 3 cut(s) 389, 492, 747
DpnII GATC 3 cut(s) 387, 490, 745
EaeI YGGCCR 1 cut(s) 470
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 435
Eco47I GGWCC 2 cut(s) 238, 554
Eco57I CTGAAG 4 cut(s) 128, 330, 362, 525
Eco88I CYCGRG 1 cut(s) 428
EcoNI CCTNNNNNAGG 2 cut(s) 113, 753
EcoO109I RGGNCCY 1 cut(s) 554
EcoRII CCWGG 1 cut(s) 447
EcoT14I CCWWGG 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 4 cut(s) 80, 215, 540, 733
FaiI YATR 9 cut(s) 78, 96, 178, 180, 213, 538, 544, 596, 731
FalI AAGNNNNNCTT 2 cut(s) 644, 676
FatI CATG 4 cut(s) 76, 211, 536, 729
FbaI TGATCA 1 cut(s) 387
Fnu4HI GCNGC 4 cut(s) 74, 284, 347, 624
FokI GGATG 2 cut(s) 141, 392
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 4 cut(s) 74, 284, 347, 624
FspBI CTAG 3 cut(s) 171, 195, 410
GlaI GCGC 1 cut(s) 524
GluI GCNGC 4 cut(s) 74, 284, 347, 624
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 1 cut(s) 472
HapII CCGG 3 cut(s) 133, 429, 462
HhaI GCGC 1 cut(s) 525
Hin1II CATG 4 cut(s) 80, 215, 540, 733
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HinfI GANTC 3 cut(s) 122, 418, 584
HpaII CCGG 3 cut(s) 133, 429, 462
HphI GGTGA 2 cut(s) 358, 382
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 6 cut(s) 147, 206, 297, 333, 490, 667
Hpy188III TCNNGA 2 cut(s) 126, 503
Hpy8I GTNNAC 1 cut(s) 359
HpyAV CCTTC 5 cut(s) 218, 374, 509, 567, 759
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 2 cut(s) 189, 564
HpyCH4V TGCA 3 cut(s) 4, 73, 261
HpyF10VI GCNNNNNNNGC 2 cut(s) 346, 529
HpyF3I CTNAG 1 cut(s) 678
HpySE526I ACGT 2 cut(s) 189, 564
Hsp92II CATG 4 cut(s) 80, 215, 540, 733
HspAI GCGC 1 cut(s) 523
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 3 cut(s) 387, 490, 745
LmnI GCTCC 1 cut(s) 758
Lsp1109I GCAGC 4 cut(s) 85, 270, 358, 610
LweI GCATC 1 cut(s) 119
MaeI CTAG 3 cut(s) 171, 195, 410
MaeII ACGT 2 cut(s) 189, 564
MaeIII GTNAC 3 cut(s) 214, 464, 476
MalI GATC 3 cut(s) 389, 492, 747
MboI GATC 3 cut(s) 387, 490, 745
MboII GAAGA 3 cut(s) 320, 323, 518
MflI RGATCY 1 cut(s) 745
MhlI GDGCHC 1 cut(s) 435
MlsI TGGCCA 1 cut(s) 472
MluCI AATT 2 cut(s) 362, 436
MluNI TGGCCA 1 cut(s) 472
MmeI TCCRAC 3 cut(s) 42, 265, 585
MnlI CCTC 7 cut(s) 6, 12, 112, 154, 245, 379, 565
Mox20I TGGCCA 1 cut(s) 472
MscI TGGCCA 1 cut(s) 472
MseI TTAA 1 cut(s) 639
Msp20I TGGCCA 1 cut(s) 472
MspI CCGG 3 cut(s) 133, 429, 462
MspR9I CCNGG 4 cut(s) 134, 429, 430, 449
MvaI CCWGG 1 cut(s) 449
MwoI GCNNNNNNNGC 2 cut(s) 346, 529
NciI CCSGG 3 cut(s) 134, 429, 430
NdeII GATC 3 cut(s) 387, 490, 745
NheI GCTAGC 1 cut(s) 194
NlaIII CATG 4 cut(s) 80, 215, 540, 733
NlaIV GGNNCC 2 cut(s) 555, 760
NmeAIII GCCGAG 1 cut(s) 673
NspI RCATGY 1 cut(s) 215
NspV TTCGAA 1 cut(s) 587
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PfeI GAWTC 3 cut(s) 122, 418, 584
PinAI ACCGGT 1 cut(s) 461
PkrI GCNGC 4 cut(s) 75, 285, 348, 625
Ppu21I YACGTR 1 cut(s) 190
PpuMI RGGWCCY 1 cut(s) 554
Psp5II RGGWCCY 1 cut(s) 554
Psp6I CCWGG 1 cut(s) 447
PspGI CCWGG 1 cut(s) 447
PspN4I GGNNCC 2 cut(s) 555, 760
PspPI GGNCC 2 cut(s) 238, 554
PspPPI RGGWCCY 1 cut(s) 554
PsuI RGATCY 1 cut(s) 745
RsaI GTAC 3 cut(s) 307, 741, 767
RsaNI GTAC 3 cut(s) 306, 740, 766
SaqAI TTAA 1 cut(s) 639
SatI GCNGC 4 cut(s) 74, 284, 347, 624
Sau3AI GATC 3 cut(s) 387, 490, 745
Sau96I GGNCC 2 cut(s) 238, 554
ScaI AGTACT 1 cut(s) 307
ScrFI CCNGG 4 cut(s) 134, 429, 430, 449
SduI GDGCHC 1 cut(s) 435
SfaNI GCATC 1 cut(s) 119
SfuI TTCGAA 1 cut(s) 587
SinI GGWCC 2 cut(s) 238, 554
SmaI CCCGGG 1 cut(s) 430
SmlI CTYRAG 1 cut(s) 753
SmoI CTYRAG 1 cut(s) 753
Sse9I AATT 2 cut(s) 362, 436
SspMI CTAG 3 cut(s) 171, 195, 410
StyD4I CCNGG 4 cut(s) 132, 427, 428, 447
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 2 cut(s) 192, 567
TaqI TCGA 4 cut(s) 41, 421, 570, 587
TasI AATT 2 cut(s) 362, 436
TatI WGTACW 3 cut(s) 305, 739, 765
TfiI GAWTC 3 cut(s) 122, 418, 584
Tru1I TTAA 1 cut(s) 639
Tru9I TTAA 1 cut(s) 639
TscAI CASTG 2 cut(s) 52, 555
TseI GCWGC 4 cut(s) 73, 283, 346, 623
TspDTI ATGAA 5 cut(s) 237, 280, 394, 708, 718
TspMI CCCGGG 1 cut(s) 428
TspRI CASTG 2 cut(s) 52, 555
VpaK11BI GGWCC 2 cut(s) 238, 554
XagI CCTNNNNNAGG 2 cut(s) 113, 753
XceI RCATGY 1 cut(s) 215
XmaI CCCGGG 1 cut(s) 428
XspI CTAG 3 cut(s) 171, 195, 410
ZrmI AGTACT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.