Prupe.5G063500_v2.0.a1

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
7735128 .. 7736354
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G063500.1

Sequence Viewer

Length: 957 bp
ATGCAATTCAGAATTATTGAGTGGGATCAAGGATGGAACTTTATCCAGGAGGGGATTATGAATCTAAAGAGGAGAATTGCAGAAGGTTTACCAGAGAATCAAGTCAGTGCCGCAGAGATTGTTGATATGTACACAACTATCTATAACATGTGCACTCAAAAACCTCCCTATCAATATACTGAGCCCCTTTATGACAGATATCAGAGGACATTTGAGGAGCACATTACTTCAACGGTGCTGCCCTCTTTGAAAGCGAAGCCCGACGAGTTTCTGTTGCAGGAGTTTGTCAAAAGCTGGGGAGATTATAAGGTTATGCTTAGGTGGATGTCTCGCTCCTTTGCATATCTTGATCGTTACTTCCTCAATCGGCCATCACGTCCGGGGCTAAAGGAAGCTGCAGTTAAATACTACCGTGATTTGGTTTACCGGGAGGTAAATGCTATCGTGAGAGAAGCTGCAATTCGTCTTATTGATAAAGAACGTGAAGGAGGAGAAATTGACAGAGCACTATTGAAGAATGTGATAGATATATTTGTTGAAATTGGAGAGGGACAAAGGGATGCTTACGAAAAGGACTTCGAAGGATACATGCTAACCGATACTCGCGATTACTATTGTCGTAAAGCATCGAGATGGATTTTGGAGGACAATTATACGAATTATATGTTGAAGGTAGAGGAATGCTTGAGAAGGGAGAGGGATATAGTTTCTCATTACCTGCATCCAAGCAGTGAGAAGATGCTGGTGGAGACAGTGAAACATTGGTTGGCGGTATATGCAAATCAACTGATTGGAAAGAAGGGTTCTGAATCTGGATGTGGAGGTGATTGCCTTACAGTTGATAATATCGAGGAGCTTTCTAAGAATTTTATTGCTGCTGTAGTATTGGAACAGCAAGTTCCTGCTCAGTGTTCAACCTTGTTCCAACAGGCTGAAGATGCTGCAATGCAGGAATGA

Protein Analysis

319

Amino Acids

37.38

Weight (kDa)

5.18

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 306
Acc36I ACCTGC 1 cut(s) 726
AccII CGCG 1 cut(s) 606
AciI CCGC 2 cut(s) 111, 770
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 368
AcsI RAATTY 1 cut(s) 865
AcuI CTGAAG 1 cut(s) 954
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 418
AflIII ACRYGT 1 cut(s) 147
AgsI TTSAA 6 cut(s) 231, 250, 514, 539, 670, 915
AjiI CACGTC 1 cut(s) 377
AjnI CCWGG 1 cut(s) 45
AjuI GAANNNNNNNTTGG 2 cut(s) 749, 781
AluBI AGCT 4 cut(s) 294, 395, 455, 856
AluI AGCT 4 cut(s) 294, 395, 455, 856
Alw21I GWGCWC 3 cut(s) 155, 222, 508
Alw26I GTCTC 2 cut(s) 333, 743
Alw44I GTGCAC 1 cut(s) 151
AlwI GGATC 1 cut(s) 33
AoxI GGCC 1 cut(s) 368
ApaLI GTGCAC 1 cut(s) 151
ApeKI GCWGC 5 cut(s) 238, 395, 455, 875, 941
ApoI RAATTY 1 cut(s) 865
AsuC2I CCSGG 2 cut(s) 381, 428
AsuHPI GGTGA 1 cut(s) 836
AsuII TTCGAA 1 cut(s) 579
BaeGI GKGCMC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 186
Bbv12I GWGCWC 3 cut(s) 155, 222, 508
BbvI GCAGC 5 cut(s) 225, 382, 442, 862, 928
BccI CCATC 3 cut(s) 27, 379, 627
BciT130I CCWGG 1 cut(s) 47
BciVI GTATCC 1 cut(s) 578
BcnI CCSGG 2 cut(s) 381, 428
BcoDI GTCTC 2 cut(s) 333, 743
BfmI CTRYAG 2 cut(s) 396, 879
BfuAI ACCTGC 1 cut(s) 726
BfuI GTATCC 1 cut(s) 578
BisI GCNGC 6 cut(s) 111, 239, 396, 456, 876, 942
BlsI GCNGC 6 cut(s) 112, 240, 397, 457, 877, 943
Bme1390I CCNGG 3 cut(s) 47, 381, 428
BmgBI CACGTC 1 cut(s) 377
BmrFI CCNGG 3 cut(s) 47, 381, 428
BmsI GCATC 5 cut(s) 550, 635, 729, 730, 928
Bpu10I CCTNAGC 1 cut(s) 317
Bpu14I TTCGAA 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 706
BpuMI CCSGG 2 cut(s) 381, 428
BsaJI CCNNGG 1 cut(s) 380
Bsc4I CCNNNNNNNGG 1 cut(s) 418
Bse3DI GCAATG 1 cut(s) 951
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 380
BseGI GGATG 5 cut(s) 38, 330, 565, 721, 821
BseLI CCNNNNNNNGG 1 cut(s) 418
BseMI GCAATG 1 cut(s) 951
BseMII CTCAG 2 cut(s) 171, 920
BseRI GAGGAG 4 cut(s) 85, 230, 504, 866
BseSI GKGCMC 1 cut(s) 155
BseXI GCAGC 5 cut(s) 225, 382, 442, 862, 928
BseYI CCCAGC 1 cut(s) 294
Bsh1236I CGCG 1 cut(s) 606
BshFI GGCC 1 cut(s) 370
BsiHKAI GWGCWC 3 cut(s) 155, 222, 508
BsiSI CCGG 2 cut(s) 380, 427
BslFI GGGAC 1 cut(s) 564
BslI CCNNNNNNNGG 1 cut(s) 418
BsmAI GTCTC 2 cut(s) 333, 743
BsmFI GGGAC 1 cut(s) 564
BsmI GAATGC 1 cut(s) 686
BsnI GGCC 1 cut(s) 370
Bsp119I TTCGAA 1 cut(s) 579
Bsp1286I GDGCHC 4 cut(s) 155, 186, 222, 508
Bsp1407I TGTACA 1 cut(s) 129
Bsp143I GATC 2 cut(s) 25, 349
Bsp68I TCGCGA 1 cut(s) 606
BspACI CCGC 2 cut(s) 111, 770
BspANI GGCC 1 cut(s) 370
BspCNI CTCAG 2 cut(s) 172, 919
BspFNI CGCG 1 cut(s) 606
BspMAI CTGCAG 1 cut(s) 400
BspMI ACCTGC 1 cut(s) 726
BspPI GGATC 1 cut(s) 33
BspT104I TTCGAA 1 cut(s) 579
BsrDI GCAATG 1 cut(s) 951
BsrGI TGTACA 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 380
BssMI GATC 2 cut(s) 25, 349
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 4 cut(s) 235, 413, 754, 838
BstAUI TGTACA 1 cut(s) 129
BstBI TTCGAA 1 cut(s) 579
BstDEI CTNAG 4 cut(s) 180, 317, 861, 906
BstF5I GGATG 5 cut(s) 38, 330, 565, 721, 821
BstFNI CGCG 1 cut(s) 606
BstKTI GATC 2 cut(s) 28, 352
BstMAI GTCTC 2 cut(s) 333, 743
BstMBI GATC 2 cut(s) 25, 349
BstMWI GCNNNNNNNGC 2 cut(s) 776, 938
BstNI CCWGG 1 cut(s) 47
BstNSI RCATGY 2 cut(s) 151, 592
BstSCI CCNGG 3 cut(s) 45, 379, 426
BstSFI CTRYAG 2 cut(s) 396, 879
BstSLI GKGCMC 1 cut(s) 155
BstUI CGCG 1 cut(s) 606
BstV1I GCAGC 5 cut(s) 225, 382, 442, 862, 928
BsuI GTATCC 1 cut(s) 578
BsuRI GGCC 1 cut(s) 370
BtrI CACGTC 1 cut(s) 377
BtsCI GGATG 5 cut(s) 38, 330, 565, 721, 821
BtsI GCAGTG 1 cut(s) 736
BtsIMutI CAGTG 4 cut(s) 112, 736, 759, 914
BtuMI TCGCGA 1 cut(s) 606
BveI ACCTGC 1 cut(s) 726
Csp6I GTAC 1 cut(s) 130
CviAII CATG 2 cut(s) 148, 589
CviJI RGCY 9 cut(s) 184, 259, 294, 370, 385, 395, 455, 856, 932
CviKI_1 RGCY 9 cut(s) 184, 259, 294, 370, 385, 395, 455, 856, 932
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 4 cut(s) 180, 317, 861, 906
DpnI GATC 2 cut(s) 27, 351
DpnII GATC 2 cut(s) 25, 349
EaeI YGGCCR 1 cut(s) 368
Eco24I GRGCYC 1 cut(s) 186
Eco32I GATATC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 954
EcoRII CCWGG 1 cut(s) 45
EcoRV GATATC 1 cut(s) 200
EcoT38I GRGCYC 1 cut(s) 186
FaeI CATG 2 cut(s) 151, 592
FalI AAGNNNNNCTT 2 cut(s) 547, 579
FaqI GGGAC 1 cut(s) 564
FatI CATG 2 cut(s) 147, 588
Fnu4HI GCNGC 6 cut(s) 111, 239, 396, 456, 876, 942
FokI GGATG 5 cut(s) 45, 337, 572, 708, 828
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 6 cut(s) 111, 239, 396, 456, 876, 942
GluI GCNGC 6 cut(s) 111, 239, 396, 456, 876, 942
GsaI CCCAGC 1 cut(s) 298
HaeIII GGCC 1 cut(s) 370
HapII CCGG 2 cut(s) 380, 427
Hin1II CATG 2 cut(s) 151, 592
HinfI GANTC 3 cut(s) 61, 97, 809
HpaII CCGG 2 cut(s) 380, 427
HphI GGTGA 1 cut(s) 836
Hpy166II GTNNAC 4 cut(s) 89, 132, 153, 424
Hpy188I TCNGA 3 cut(s) 11, 204, 808
Hpy188III TCNNGA 5 cut(s) 347, 445, 605, 630, 813
Hpy8I GTNNAC 4 cut(s) 89, 132, 153, 424
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 6 cut(s) 77, 479, 575, 664, 684, 793
HpyCH4III ACNGT 4 cut(s) 235, 413, 754, 838
HpyCH4IV ACGT 2 cut(s) 376, 481
HpyF10VI GCNNNNNNNGC 2 cut(s) 776, 938
HpyF3I CTNAG 4 cut(s) 180, 317, 861, 906
HpySE526I ACGT 2 cut(s) 376, 481
Hsp92II CATG 2 cut(s) 151, 592
Kzo9I GATC 2 cut(s) 25, 349
LmnI GCTCC 3 cut(s) 217, 338, 853
Lsp1109I GCAGC 5 cut(s) 225, 382, 442, 862, 928
LweI GCATC 5 cut(s) 550, 635, 729, 730, 928
MaeII ACGT 2 cut(s) 376, 481
MaeIII GTNAC 1 cut(s) 353
MalI GATC 2 cut(s) 27, 351
MboI GATC 2 cut(s) 25, 349
MboII GAAGA 3 cut(s) 526, 748, 947
MhlI GDGCHC 4 cut(s) 155, 186, 222, 508
MluCI AATT 9 cut(s) 5, 12, 75, 459, 495, 540, 649, 658, 865
MmeI TCCRAC 1 cut(s) 949
MseI TTAA 1 cut(s) 402
MslI CAYNNNNRTG 1 cut(s) 631
MspI CCGG 2 cut(s) 380, 427
MspR9I CCNGG 3 cut(s) 47, 381, 428
Mva1269I GAATGC 1 cut(s) 686
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 606
MwoI GCNNNNNNNGC 2 cut(s) 776, 938
NciI CCSGG 2 cut(s) 381, 428
NdeII GATC 2 cut(s) 25, 349
NlaIII CATG 2 cut(s) 151, 592
NruI TCGCGA 1 cut(s) 606
NspI RCATGY 2 cut(s) 151, 592
NspV TTCGAA 1 cut(s) 579
PciI ACATGT 1 cut(s) 147
PcsI WCGNNNNNNNCGW 1 cut(s) 373
PctI GAATGC 1 cut(s) 686
PfeI GAWTC 3 cut(s) 61, 97, 809
PfoI TCCNGGA 1 cut(s) 45
PkrI GCNGC 6 cut(s) 112, 240, 397, 457, 877, 943
PscI ACATGT 1 cut(s) 147
PsiI TTATAA 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 294
PspGI CCWGG 1 cut(s) 45
PstI CTGCAG 1 cut(s) 400
RruI TCGCGA 1 cut(s) 606
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
RseI CAYNNNNRTG 1 cut(s) 631
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 6 cut(s) 111, 239, 396, 456, 876, 942
Sau3AI GATC 2 cut(s) 25, 349
ScrFI CCNGG 3 cut(s) 47, 381, 428
SduI GDGCHC 4 cut(s) 155, 186, 222, 508
SfaNI GCATC 5 cut(s) 550, 635, 729, 730, 928
SfcI CTRYAG 2 cut(s) 396, 879
SfuI TTCGAA 1 cut(s) 579
SmiMI CAYNNNNRTG 1 cut(s) 631
SmlI CTYRAG 1 cut(s) 685
SmoI CTYRAG 1 cut(s) 685
Sse9I AATT 9 cut(s) 5, 12, 75, 459, 495, 540, 649, 658, 865
SsiI CCGC 2 cut(s) 111, 770
StyD4I CCNGG 3 cut(s) 45, 379, 426
TaaI ACNGT 4 cut(s) 235, 413, 754, 838
TaiI ACGT 2 cut(s) 379, 484
TaqI TCGA 3 cut(s) 579, 629, 849
TasI AATT 9 cut(s) 5, 12, 75, 459, 495, 540, 649, 658, 865
TatI WGTACW 1 cut(s) 129
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 3 cut(s) 61, 97, 809
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 4 cut(s) 112, 736, 759, 914
TseI GCWGC 5 cut(s) 238, 395, 455, 875, 941
TspDTI ATGAA 1 cut(s) 74
TspRI CASTG 4 cut(s) 112, 736, 759, 914
VneI GTGCAC 1 cut(s) 151
XapI RAATTY 1 cut(s) 865
XceI RCATGY 2 cut(s) 151, 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.