Rorug07G0083500

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
6594245 .. 6595767
1523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0083500.1

Sequence Viewer

Length: 945 bp
ATGGATAGTCACTCCCAACATGCCATGCAGCTAGTAAGCGCATCACTGGTGCCTATGGTGCTTAAAGCAGCCATAGAACTTGGTGTGCTTGACATAATACATAGAGCTGGCCCTGGAGCTCTGCTTTCACCTTCCCAAATTGCGTCTCAGCTCTCTTCTCAGAACAACCCAGGTGCCCCTTTAGTGCTTGATCGTAATCATCGTATGCTTCGCCTTCTGTCTGCCCACTCAGTTCTCACTTGCTCTGTTTCCGCCCACCAACCCAGGTACCATTTGGCAGAAGCAGTTTTGGAAGGAGGAATTCCATTTACCAAGACCTATGGAACGGATGTGGTGGAGTATCTAGGGAAAGATGCTAGATGTGGTGAAATATTTAAAAACTCGATGAGAGAGTTTAACCCAATTTTAATGAAGGAGATCCTGGAGAATTATAAAGGTTTTGAAGGTGTAAATACACTCGTAGATGTGGGTGGTGGTGATGGTACTATCCTTAACATGATTGTCTCCAAGTACCCTACCATCAAGGCTATCAACTATGATTTAGCTTCTGTTATAGAAAAGTCTCCCTCCTATCCTGGTATAGAGCATATTGCAGGAGATATGTTTGTAAGTATTCCGAAAGGAGATGCCATTTTCATGAAGTGGGTACTACACCTTTTCGATGACAAACATTGCTTGATGATACTAAAGAACTGCTATGAGGCCTTGCCAGACCATGGGAAAATGATGGTAGTAAATTTGGTTATACCAGAAGCCCCTGAAACTAGTCTTTCTGCTAAAAGCTTGTTTCAGTTTGATATGTTCCTGATGAACACCACTACAAGTGAAAGGGAGAGGACAGAGAAAGAATTCGAAAGTTTGGCAAAACAAGCAGGGTTTTACACCATTCGAGTGGCATGTTCTGCATTTAATTTTTCAGTAGTGGAGCTTTTCAAGAGCATGTAA

Protein Analysis

314

Amino Acids

34.69

Weight (kDa)

6.0

Isoelectric Point (pI)

31.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 9 - 94 5.6e-14 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 90 - 293 4.9e-58 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
Acc65I GGTACC 1 cut(s) 267
AccB1I GGYRCC 3 cut(s) 49, 173, 267
AccB7I CCANNNNNTGG 1 cut(s) 716
AciI CCGC 1 cut(s) 252
AclWI GGATC 1 cut(s) 412
AcsI RAATTY 3 cut(s) 300, 736, 848
AfaI GTAC 4 cut(s) 269, 484, 512, 648
AfiI CCNNNNNNNGG 1 cut(s) 716
AgsI TTSAA 2 cut(s) 443, 934
AhlI ACTAGT 1 cut(s) 764
AjnI CCWGG 5 cut(s) 112, 169, 263, 420, 574
AluBI AGCT 7 cut(s) 31, 107, 119, 151, 545, 783, 928
AluI AGCT 7 cut(s) 31, 107, 119, 151, 545, 783, 928
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 3 cut(s) 150, 508, 567
AlwI GGATC 1 cut(s) 412
AoxI GGCC 2 cut(s) 109, 702
ApeKI GCWGC 2 cut(s) 28, 68
ApoI RAATTY 3 cut(s) 300, 736, 848
Asp700I GAANNNNTTC 1 cut(s) 848
Asp718I GGTACC 1 cut(s) 267
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 110
AsuHPI GGTGA 3 cut(s) 120, 377, 488
AsuII TTCGAA 1 cut(s) 852
BaeGI GKGCMC 1 cut(s) 178
BaeI ACNNNNGTAYC 2 cut(s) 251, 284
BanI GGYRCC 3 cut(s) 49, 173, 267
BanII GRGCYC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 40, 80
BccI CCATC 3 cut(s) 473, 527, 721
BciT130I CCWGG 5 cut(s) 114, 171, 265, 422, 576
BcoDI GTCTC 3 cut(s) 150, 508, 567
BcuI ACTAGT 1 cut(s) 764
BfaI CTAG 4 cut(s) 32, 344, 357, 765
BisI GCNGC 2 cut(s) 29, 69
BlsI GCNGC 2 cut(s) 30, 70
Bme1390I CCNGG 5 cut(s) 114, 171, 265, 422, 576
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 3 cut(s) 51, 175, 269
BmrFI CCNGG 5 cut(s) 114, 171, 265, 422, 576
BmsI GCATC 3 cut(s) 50, 343, 616
BpmI CTGGAG 2 cut(s) 135, 443
Bpu14I TTCGAA 1 cut(s) 852
BsaBI GATNNNNATC 1 cut(s) 195
BsaJI CCNNGG 4 cut(s) 112, 169, 263, 715
Bsc4I CCNNNNNNNGG 1 cut(s) 716
Bse1I ACTGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 670
Bse8I GATNNNNATC 1 cut(s) 195
BseBI CCWGG 5 cut(s) 114, 171, 265, 422, 576
BseDI CCNNGG 4 cut(s) 112, 169, 263, 715
BseGI GGATG 1 cut(s) 334
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 716
BseMI GCAATG 1 cut(s) 670
BseMII CTCAG 3 cut(s) 161, 173, 243
BseNI ACTGG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 178
BseXI GCAGC 2 cut(s) 40, 80
BshFI GGCC 2 cut(s) 111, 704
BshNI GGYRCC 3 cut(s) 49, 173, 267
BsiHKAI GWGCWC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 716
BsmAI GTCTC 3 cut(s) 150, 508, 567
BsmBI CGTCTC 1 cut(s) 150
BsnI GGCC 2 cut(s) 111, 704
Bsp119I TTCGAA 1 cut(s) 852
Bsp1286I GDGCHC 2 cut(s) 121, 178
Bsp143I GATC 2 cut(s) 190, 417
Bsp19I CCATGG 1 cut(s) 715
BspACI CCGC 1 cut(s) 252
BspANI GGCC 2 cut(s) 111, 704
BspCNI CTCAG 3 cut(s) 160, 172, 242
BspHI TCATGA 1 cut(s) 636
BspLI GGNNCC 3 cut(s) 51, 175, 269
BspPI GGATC 1 cut(s) 412
BspT104I TTCGAA 1 cut(s) 852
BspT107I GGYRCC 3 cut(s) 49, 173, 267
BsrDI GCAATG 1 cut(s) 670
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 4 cut(s) 112, 169, 263, 715
BssMI GATC 2 cut(s) 190, 417
BssT1I CCWWGG 1 cut(s) 715
Bst2UI CCWGG 5 cut(s) 114, 171, 265, 422, 576
Bst6I CTCTTC 1 cut(s) 160
BstAPI GCANNNNNTGC 1 cut(s) 902
BstBI TTCGAA 1 cut(s) 852
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 3 cut(s) 147, 159, 229
BstDSI CCRYGG 1 cut(s) 715
BstF5I GGATG 1 cut(s) 334
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 2 cut(s) 193, 420
BstMAI GTCTC 3 cut(s) 150, 508, 567
BstMBI GATC 2 cut(s) 190, 417
BstMWI GCNNNNNNNGC 3 cut(s) 58, 869, 902
BstNI CCWGG 5 cut(s) 114, 171, 265, 422, 576
BstNSI RCATGY 3 cut(s) 23, 900, 943
BstSCI CCNGG 5 cut(s) 112, 169, 263, 420, 574
BstSLI GKGCMC 1 cut(s) 178
BstV1I GCAGC 2 cut(s) 40, 80
BstX2I RGATCY 1 cut(s) 417
BstXI CCANNNNNNTGG 1 cut(s) 892
BstYI RGATCY 1 cut(s) 417
BsuRI GGCC 2 cut(s) 111, 704
BtgI CCRYGG 1 cut(s) 715
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 109
CciI TCATGA 1 cut(s) 636
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 110
CseI GACGC 1 cut(s) 132
Csp6I GTAC 4 cut(s) 268, 483, 511, 647
CviAII CATG 7 cut(s) 20, 25, 496, 637, 716, 897, 940
CviQI GTAC 4 cut(s) 268, 483, 511, 647
DdeI CTNAG 3 cut(s) 147, 159, 229
DpnI GATC 2 cut(s) 192, 419
DpnII GATC 2 cut(s) 190, 417
DraI TTTAAA 1 cut(s) 376
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
EciI GGCGGA 1 cut(s) 241
Ecl136II GAGCTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 715
Eco147I AGGCCT 1 cut(s) 704
Eco24I GRGCYC 1 cut(s) 121
Eco53kI GAGCTC 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 119
EcoRI GAATTC 2 cut(s) 300, 848
EcoRII CCWGG 5 cut(s) 112, 169, 263, 420, 574
EcoT14I CCWWGG 1 cut(s) 715
EcoT38I GRGCYC 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 715
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 7 cut(s) 23, 28, 499, 640, 719, 900, 943
FatI CATG 7 cut(s) 19, 24, 495, 636, 715, 896, 939
Fnu4HI GCNGC 2 cut(s) 29, 69
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 2 cut(s) 29, 69
FspBI CTAG 4 cut(s) 32, 344, 357, 765
GlaI GCGC 1 cut(s) 40
GluI GCNGC 2 cut(s) 29, 69
GsuI CTGGAG 2 cut(s) 135, 443
HaeIII GGCC 2 cut(s) 111, 704
HgaI GACGC 1 cut(s) 132
HhaI GCGC 1 cut(s) 41
Hin1II CATG 7 cut(s) 23, 28, 499, 640, 719, 900, 943
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HindIII AAGCTT 1 cut(s) 781
HphI GGTGA 3 cut(s) 120, 377, 488
Hpy188I TCNGA 2 cut(s) 162, 618
Hpy188III TCNNGA 3 cut(s) 637, 805, 934
HpyAV CCTTC 5 cut(s) 141, 224, 287, 406, 437
HpyCH4V TGCA 3 cut(s) 28, 593, 905
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 869, 902
HpyF3I CTNAG 3 cut(s) 147, 159, 229
Hsp92II CATG 7 cut(s) 23, 28, 499, 640, 719, 900, 943
HspAI GCGC 1 cut(s) 39
KpnI GGTACC 1 cut(s) 271
Kzo9I GATC 2 cut(s) 190, 417
LmnI GCTCC 2 cut(s) 116, 925
Lsp1109I GCAGC 2 cut(s) 40, 80
LweI GCATC 3 cut(s) 50, 343, 616
MaeI CTAG 4 cut(s) 32, 344, 357, 765
MaeIII GTNAC 1 cut(s) 8
MalI GATC 2 cut(s) 192, 419
MboI GATC 2 cut(s) 190, 417
MboII GAAGA 1 cut(s) 147
MflI RGATCY 1 cut(s) 417
MhlI GDGCHC 2 cut(s) 121, 178
MluCI AATT 7 cut(s) 138, 300, 402, 427, 736, 848, 910
MnlI CCTC 4 cut(s) 290, 577, 694, 828
MroXI GAANNNNTTC 1 cut(s) 848
MseI TTAA 6 cut(s) 63, 375, 396, 407, 492, 909
MslI CAYNNNNRTG 2 cut(s) 635, 890
MspR9I CCNGG 5 cut(s) 114, 171, 265, 422, 576
MvaI CCWGG 5 cut(s) 114, 171, 265, 422, 576
MwoI GCNNNNNNNGC 3 cut(s) 58, 869, 902
NcoI CCATGG 1 cut(s) 715
NdeII GATC 2 cut(s) 190, 417
NlaIII CATG 7 cut(s) 23, 28, 499, 640, 719, 900, 943
NlaIV GGNNCC 3 cut(s) 51, 175, 269
NmuCI GTSAC 1 cut(s) 8
NspI RCATGY 3 cut(s) 23, 900, 943
NspV TTCGAA 1 cut(s) 852
PagI TCATGA 1 cut(s) 636
PceI AGGCCT 1 cut(s) 704
PcsI WCGNNNNNNNCGW 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 848
PflMI CCANNNNNTGG 1 cut(s) 716
PfoI TCCNGGA 1 cut(s) 420
PkrI GCNGC 2 cut(s) 30, 70
PsiI TTATAA 1 cut(s) 432
Psp124BI GAGCTC 1 cut(s) 121
Psp6I CCWGG 5 cut(s) 112, 169, 263, 420, 574
PspGI CCWGG 5 cut(s) 112, 169, 263, 420, 574
PspN4I GGNNCC 3 cut(s) 51, 175, 269
PspPI GGNCC 1 cut(s) 110
PsuI RGATCY 1 cut(s) 417
RsaI GTAC 4 cut(s) 269, 484, 512, 648
RsaNI GTAC 4 cut(s) 268, 483, 511, 647
RseI CAYNNNNRTG 2 cut(s) 635, 890
SacI GAGCTC 1 cut(s) 121
SaqAI TTAA 6 cut(s) 63, 375, 396, 407, 492, 909
SatI GCNGC 2 cut(s) 29, 69
Sau3AI GATC 2 cut(s) 190, 417
Sau96I GGNCC 1 cut(s) 110
ScrFI CCNGG 5 cut(s) 114, 171, 265, 422, 576
SduI GDGCHC 2 cut(s) 121, 178
SfaNI GCATC 3 cut(s) 50, 343, 616
SfuI TTCGAA 1 cut(s) 852
SmiMI CAYNNNNRTG 2 cut(s) 635, 890
SpeI ACTAGT 1 cut(s) 764
Sse9I AATT 7 cut(s) 138, 300, 402, 427, 736, 848, 910
SseBI AGGCCT 1 cut(s) 704
SsiI CCGC 1 cut(s) 252
SspI AATATT 1 cut(s) 372
SspMI CTAG 4 cut(s) 32, 344, 357, 765
SstI GAGCTC 1 cut(s) 121
StuI AGGCCT 1 cut(s) 704
StyD4I CCNGG 5 cut(s) 112, 169, 263, 420, 574
StyI CCWWGG 1 cut(s) 715
TaqI TCGA 4 cut(s) 383, 660, 852, 889
TasI AATT 7 cut(s) 138, 300, 402, 427, 736, 848, 910
Tru1I TTAA 6 cut(s) 63, 375, 396, 407, 492, 909
Tru9I TTAA 6 cut(s) 63, 375, 396, 407, 492, 909
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 2 cut(s) 28, 68
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 4 cut(s) 425, 625, 653, 824
TspGWI ACGGA 1 cut(s) 341
TspRI CASTG 1 cut(s) 51
Van91I CCANNNNNTGG 1 cut(s) 716
XapI RAATTY 3 cut(s) 300, 736, 848
XceI RCATGY 3 cut(s) 23, 900, 943
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 848
XspI CTAG 4 cut(s) 32, 344, 357, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.