MD04G1059700.v1.1

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
7746053 .. 7746948
896 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1059700.v1.1.491

Sequence Viewer

Length: 756 bp
ATGAACAGGATTATACAAGGATCATCAGAACCTCAGTTCACCTCAGAAGAATATATGAGCCTTTACACAACTATCTATAACATGTCTATTCAACAACCTCCTCATAATTATTCTCAGCAGCTCTATGAAAAGTATCAGAAGACAATTGAGGAATACATTTCTTCAACAGTGTTGCTGCCCCTAATGGAGAAGCATGATGAGTTGATGTTGCAGGAGTACGTCAAAAATTGGGTAAATGCTAATGTGAGATATTATGTACTTGGACTTATGCATAAAGAACGCGAGGGAGAGAAAATTGACAGAGCACTACTGAAGAATGTGATAAATATATATGTTGAAATTGAAATGGGAGAATTGGATGCGTATGAAAAGGACTTCGAAGAATACATGCTTATTGATACTCGCAAGTACTATTTGCATAAAGCATCAAGTTGGATTTTGGAGTACTCATACACGGATTACATGTTGAAGGCAGATGAATGCTTGAGAAGGGAGAGGGATAGAGTTTCTTGTTACCTGCTTCCGAGCAGTCAGAAGAAGCTAATGGAGACAGTGAAACATTGCTTGGTGGTGGTTCATGGAAGTCAATTGATTCAGAAGAAGCATTCTGTATCTGGATGTACTTTGCTCACGGATGAAAATCTGGAGGAGCTTTCTAGGAAATTTATTGCTAATTTGGCATTGGAACAACGAGTCTCTGCTGAAGGTTCACCCTTTGTTCGACAGGCAGAAGATGTAGCAATGATTGAGGATTGA

Protein Analysis

252

Amino Acids

29.66

Weight (kDa)

5.22

Isoelectric Point (pI)

62.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cullin PF00888 12 - 79 1.2e-08 Cullin alpha solenoid domain
Cullin PF00888 82 - 220 1.3e-24 Cullin alpha solenoid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 525
AccII CGCG 1 cut(s) 282
AclWI GGATC 1 cut(s) 28
AcsI RAATTY 1 cut(s) 662
AcuI CTGAAG 2 cut(s) 332, 723
AfaI GTAC 5 cut(s) 218, 258, 410, 446, 622
AflIII ACRYGT 2 cut(s) 81, 462
AgsI TTSAA 5 cut(s) 92, 165, 338, 344, 469
AjuI GAANNNNNNNTTGG 2 cut(s) 548, 580
AluBI AGCT 3 cut(s) 121, 541, 652
AluI AGCT 3 cut(s) 121, 541, 652
Alw21I GWGCWC 1 cut(s) 307
Alw26I GTCTC 2 cut(s) 542, 700
AlwI GGATC 1 cut(s) 28
ApeKI GCWGC 2 cut(s) 118, 175
ApoI RAATTY 1 cut(s) 662
AsuHPI GGTGA 2 cut(s) 31, 702
AsuII TTCGAA 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 307
BbvI GCAGC 2 cut(s) 130, 162
BcoDI GTCTC 2 cut(s) 542, 700
BfaI CTAG 1 cut(s) 657
BfuAI ACCTGC 1 cut(s) 525
BisI GCNGC 2 cut(s) 119, 176
BlsI GCNGC 2 cut(s) 120, 177
BmcAI AGTACT 2 cut(s) 410, 446
BmsI GCATC 2 cut(s) 349, 434
BpiI GAAGAC 1 cut(s) 146
BpmI CTGGAG 1 cut(s) 665
Bpu14I TTCGAA 1 cut(s) 378
BpuEI CTTGAG 1 cut(s) 505
BsaBI GATNNNNATC 1 cut(s) 639
Bse3DI GCAATG 2 cut(s) 559, 747
Bse8I GATNNNNATC 1 cut(s) 639
BseGI GGATG 3 cut(s) 364, 623, 640
BseJI GATNNNNATC 1 cut(s) 639
BseMI GCAATG 2 cut(s) 559, 747
BseMII CTCAG 3 cut(s) 47, 57, 128
BseRI GAGGAG 2 cut(s) 90, 662
BseXI GCAGC 2 cut(s) 130, 162
Bsh1236I CGCG 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 307
BsmAI GTCTC 2 cut(s) 542, 700
BsmI GAATGC 2 cut(s) 485, 604
Bsp119I TTCGAA 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 307
Bsp143I GATC 1 cut(s) 20
BspCNI CTCAG 3 cut(s) 46, 56, 127
BspFNI CGCG 1 cut(s) 282
BspMI ACCTGC 1 cut(s) 525
BspPI GGATC 1 cut(s) 28
BspT104I TTCGAA 1 cut(s) 378
BsrDI GCAATG 2 cut(s) 559, 747
BssMI GATC 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 169, 553
BstBI TTCGAA 1 cut(s) 378
BstDEI CTNAG 3 cut(s) 33, 43, 114
BstF5I GGATG 3 cut(s) 364, 623, 640
BstFNI CGCG 1 cut(s) 282
BstKTI GATC 1 cut(s) 23
BstMAI GTCTC 2 cut(s) 542, 700
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 1 cut(s) 677
BstNSI RCATGY 3 cut(s) 85, 391, 466
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 130, 162
BstV2I GAAGAC 1 cut(s) 146
BtsCI GGATG 3 cut(s) 364, 623, 640
BtsIMutI CAGTG 2 cut(s) 174, 558
BveI ACCTGC 1 cut(s) 525
Csp6I GTAC 5 cut(s) 217, 257, 409, 445, 621
CviAII CATG 5 cut(s) 82, 194, 388, 463, 578
CviJI RGCY 4 cut(s) 60, 121, 541, 652
CviKI_1 RGCY 4 cut(s) 60, 121, 541, 652
CviQI GTAC 5 cut(s) 217, 257, 409, 445, 621
DdeI CTNAG 3 cut(s) 33, 43, 114
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
Eco57I CTGAAG 2 cut(s) 332, 723
EcoT22I ATGCAT 1 cut(s) 273
FaeI CATG 5 cut(s) 85, 197, 391, 466, 581
FatI CATG 5 cut(s) 81, 193, 387, 462, 577
Fnu4HI GCNGC 2 cut(s) 119, 176
FokI GGATG 3 cut(s) 371, 630, 647
Fsp4HI GCNGC 2 cut(s) 119, 176
FspBI CTAG 1 cut(s) 657
GluI GCNGC 2 cut(s) 119, 176
GsuI CTGGAG 1 cut(s) 665
Hin1II CATG 5 cut(s) 85, 197, 391, 466, 581
HinfI GANTC 2 cut(s) 592, 693
HphI GGTGA 2 cut(s) 31, 702
Hpy166II GTNNAC 2 cut(s) 39, 710
Hpy188I TCNGA 6 cut(s) 28, 46, 138, 525, 534, 597
Hpy188III TCNNGA 2 cut(s) 615, 644
Hpy8I GTNNAC 2 cut(s) 39, 710
HpyAV CCTTC 3 cut(s) 463, 483, 698
HpyCH4III ACNGT 2 cut(s) 169, 553
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 3 cut(s) 211, 271, 418
HpyF10VI GCNNNNNNNGC 1 cut(s) 677
HpyF3I CTNAG 3 cut(s) 33, 43, 114
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 5 cut(s) 85, 197, 391, 466, 581
Kzo9I GATC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 649
LpnPI CCDG 5 cut(s) 197, 530, 600, 629, 710
Lsp1109I GCAGC 2 cut(s) 130, 162
LweI GCATC 2 cut(s) 349, 434
MaeI CTAG 1 cut(s) 657
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 512
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 8 cut(s) 59, 151, 153, 325, 392, 547, 610, 743
MfeI CAATTG 2 cut(s) 144, 587
MhlI GDGCHC 1 cut(s) 307
MluCI AATT 9 cut(s) 106, 144, 226, 294, 339, 353, 587, 662, 673
MlyI GAGTC 1 cut(s) 702
MmeI TCCRAC 1 cut(s) 413
MnlI CCTC 9 cut(s) 42, 52, 108, 111, 142, 277, 489, 640, 742
Mph1103I ATGCAT 1 cut(s) 273
MunI CAATTG 2 cut(s) 144, 587
Mva1269I GAATGC 2 cut(s) 485, 604
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 677
NdeII GATC 1 cut(s) 20
NlaIII CATG 5 cut(s) 85, 197, 391, 466, 581
NsiI ATGCAT 1 cut(s) 273
NspI RCATGY 3 cut(s) 85, 391, 466
NspV TTCGAA 1 cut(s) 378
PciI ACATGT 2 cut(s) 81, 462
PctI GAATGC 2 cut(s) 485, 604
PfeI GAWTC 1 cut(s) 592
PkrI GCNGC 2 cut(s) 120, 177
PleI GAGTC 1 cut(s) 701
PpsI GAGTC 1 cut(s) 701
PscI ACATGT 2 cut(s) 81, 462
RsaI GTAC 5 cut(s) 218, 258, 410, 446, 622
RsaNI GTAC 5 cut(s) 217, 257, 409, 445, 621
SatI GCNGC 2 cut(s) 119, 176
Sau3AI GATC 1 cut(s) 20
ScaI AGTACT 2 cut(s) 410, 446
SchI GAGTC 1 cut(s) 702
SduI GDGCHC 1 cut(s) 307
SetI ASST 9 cut(s) 34, 44, 100, 123, 222, 519, 543, 654, 709
SfaNI GCATC 2 cut(s) 349, 434
SfuI TTCGAA 1 cut(s) 378
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
Sse9I AATT 9 cut(s) 106, 144, 226, 294, 339, 353, 587, 662, 673
SspMI CTAG 1 cut(s) 657
TaaI ACNGT 2 cut(s) 169, 553
TaiI ACGT 1 cut(s) 222
TaqI TCGA 2 cut(s) 378, 721
TasI AATT 9 cut(s) 106, 144, 226, 294, 339, 353, 587, 662, 673
TatI WGTACW 4 cut(s) 256, 408, 444, 620
TfiI GAWTC 1 cut(s) 592
TscAI CASTG 2 cut(s) 174, 558
TseI GCWGC 2 cut(s) 118, 175
TspDTI ATGAA 6 cut(s) 17, 141, 381, 492, 566, 651
TspGWI ACGGA 2 cut(s) 470, 647
TspRI CASTG 2 cut(s) 174, 558
XapI RAATTY 1 cut(s) 662
XceI RCATGY 3 cut(s) 85, 391, 466
XspI CTAG 1 cut(s) 657
ZrmI AGTACT 2 cut(s) 410, 446
Zsp2I ATGCAT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.