Rroxscaffold_3G00253040

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
47118576 .. 47133395
14820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00253040.1

Sequence Viewer

Length: 3807 bp
ATGAAGATCAGGAAGTTGGAGGAGCCAGATCCCAGCAGGCAGGATATTGAATTCACAACAATGAGTCGCAAACTCATATATTTCAGTGAAGGATGGGAATATGTCAAGAAAGGGATCACAAAGCTAAGGCTGGTTGCAGAAGGATCAGAGCCTCCATTCACAGCAGAAGAATATATGTTGCTGCACACAACTATCTTTAACATGTGTACTCAAAAGCCCCCCTATGATTATTCTAAAGAGCTTTATAGAAAATATCACGAGACATGTGAAGAATATTACAGGGACACATGTGAAGAATTTGTTACTTCAACAAATCAACCTGATGAGTTTGTTTTGCGGGAGCTTGTCAAAATATGGGAACATCACAAACTCATGAAACTTTCTACACTAAATGAATTAGTTGCAGTTAACCGCTTTCGTGATTTGGTTTATCAGAGGGTAAATGCTAAGGTCAGAGATGCTATAGTTCATCTTATTGATAAGGAGCGCAGTGGAGAGGAAATTGATAGAGCAGCAGTGAAGAAAGCAGTAGATGTAATTGTTGAAATTGGAATGGGAACAGTGAATGCTTATGAAAGCGACTTTGAAGCAGACTTGCTAAGAAATGCTGGTGAGTATTATTCCCGTAAAGCATCAAGTTGGATTTTGGAGGTAAAATCTGATGCAGATTATATGTCGAAGGCTGAGGAGTGCTTGCGGAAAGAGAGGGATAGGGCTTCACATTGCTTCCATGCAAGTAATGAGCGTAAGCTGGTCCAGAGAGTGCAACATGAGCTCTTTGAACCTCTCGCTAGCATATTTAAACAGAAAGTTACTGCTGAGGGTACAACCATGGTTCGAGATGCTGCAAAAGACAAGGCTTCTTCAGATGGAGCTGGCCTGGCAGAACAGGTCCTTGTCAAAAATTTAATCAAGCTGCATGATAAGCATATGGCATATGTCAATCATTGCTTTAAAAACTACTATCCCTTTCGCAAGGCTTTGAAGGAGGCTTTTGAGGTATTTTGCAATGGAGCTGTTGCTGGGATTTCAAGTGCTGAAATACTTGCTGCATTCTGTGATAATCTCCTCAAAAGCAGAAGGAATGAGATGGTGATGGGTGAGCAGGAAATAGAAGAAACTCTTGAAAAGGTTGTCAGTTCGCTGCTTCCTTATCTGAGTGACAAAGACCTTTTTGCAGAATTCTACAGGAAAAGACTTGCTCGTCGTCTCTTGTTTGATCGCTGTCTTAGCAAGGACCATGAAGAGAGAATTTTGACACAGATGAAGCAGCAATGTGGTGCACCTTTCACCTCAAAGATGGAGGGAATGGTCACAGATTTGGTATTGAGTGAGGACATTCAGATGAGGTTTCAGGAATATCTGCAGAGTAATCCAAATGTAAATCATCTGGGGATGGATTTGACTGTGACTGTTCTTACAACTGGTTTCTGGCCAAGTTATAAATCATTTGATGTTAATATACCTGAAGAGTTGGTGAGATGTGTTGAAGTTTTCAAAGGATTCTATGAAACAAAAACGAAGCATAGAAAGCTTACATGGGTTTACTCATTGGGCTCGTGCAACATTGTTGGGAAGTTTGAGCCAAAAAAAGTTGAATTGGTTGTATCAACATATCAGGCTGCTCTCCTCCTACTCTTCAATACTGCAGATAGATTGAGCTATTCAGAAATAGCAACTCGGTTAAACCTTAACCACGACGACTTGGTTAGAATTCTTCATTCACTCTCATGTGCTCAGTATAAGATTCTTATCAAGAAGCCAAATACAAAGACTATCTCACCAAATGACGACTTTGAGTTCAATTCTAAGTTCACACACAGAATGAGAAAAATCAAGATTCCTCTCCCACGAGTGGTGGAAGAAAGGAAAGAAGTAATAGGTAATGTAAACAACGATAGACGTTATGCTATTGATGCGGCAATCGTGCGAATTATGAAGCGGCAAAAGGTTTTGGGTCATCTACAATTAGTTACAGAGTGTGTTGAGCAGTTGAGACATACATTCAAGCCTGACATCAAAGCAATCAAGAAGCGCATTGAAGACCTTGTCACCCGTGACTACATTGAGAGGGATAAGAAAAACGCAACAGAAGTACTGGTACAAGCATCCTTCTTCAAGCTGAAGGAAGTGCACTACTCTCAGGGATCTTCTGCTACAAGGAATGCTGGGTGCCAGAATACTAATAGGCTCCTGATTGATATATTGAATGGAAAGGCCCAAATCCCCTGGAAAATGAACACTCCCATAAATGCTGTCGAAAATCGTTTTATTCGTCCTTGGAAATTGTTCACACTCATAAGAGAAAGAATCGCCGCGCCGCAAGTCTCGGGATCCGGCATTGAAGCTTGCGAGCATGTGGGCAATGGGGCAGCGATGCTTGGTGTCGGAGCAGAAGATCGCGGCCCAAAGCTTCAAGATCTAGGCGCTCCGCTTTGGAATATGACAAGACGCACTCAGTCAAAAAACCAAGAAAAAGAAGGATACTGGATATTTCTATATGCGATAATGAATTGGCCAACAAAATATCCGATTGAGTTCGATGAAGGATGGAGATGTATTGAGGAGGGGATTTCAAAGCTAACGATGATTGCGGAAGGAACACATCGTCCATTCACAGCTGAAGAACACATGACTCTTCATACAGTGGTCTTTGACATGTGTACTCAGAGGCCCCCTTATGACCATAGTCAACAGCTTTATATCAAATACCGAAATATAGGTGAAGAATGCAGGGAGAGATGTGAAAAATACAGTGTGCCAATGAATCAGGATGATGAGTTTATTTTGTGGGACCTTGTCCATAGATGGGCACATTATAAAATTGCGGTTAATACAGTGCCGCGCATCTTTCATTATCTTCATCGCTACTATATGCCTCGTAGGTCACTTCCTGGAATAAATGACATTGTTGGACCTAACTGCTTCCGTGATTTGGTTTATCAGAAAGCCAATGTTAATGTGAGAGTTGCTGTAATCAATCTTATTCGTAAAGAACGTGAGGGAGAGAAAATTGACAGAGAACTTTTGAAGAAGGTGATAAATGCATATATTGAAATTGGAATGAAAAGAATGCATACTTATGAACAGGATTTTGAAGCACACATGCTAAAAGATACAGGTGAATACTATTCTCGTCAAGCATCTAGTTGGATTTTGGCAGATTCATATGCAGACTATATGCGGAAGGCCGAGGGATGCTTGAGAAAGGAGAGGGATAGAGTTTCTCATTACATGCATTCAAGCAGTGAGCAGAAGCTGTTGGACAAAGTCCAACATGAATTGTTTGATCCTCTTGCTGATGTATTTAAACAGCAAGTTGATATAGAATGTACAAATTTGGTACACCTGGTTGAAGATGCTGCAGAAAACCAGGCTTCTTCTAATGGAGCAGACATGCTGGAACAGGTTCTTGTCAGGAAATTAAGTGAGGTGCATGTTAAGTATGTGAAATATGTCAATGATTGCTTCAAGAACTACTTTCACTTTCAGAGGGCTCTATTTGAGGCTTTTGGGGAATTTTGTGATAGAGTTTCTTCTGGATATCTTGCTTTACTTAGAGAGGATAAGATGGAGGATCTTTTACTGATATATAAACTTTACCATAAAGTACCTGGAGGCCTGGAACCTTTTGCTAATTTATTTAAACAGTATGTTACTGCTCAAGGTACAGCCTTGATTAAACAGGCTGATAATATTGCAAATAATCAGGCTTTCAATGGAGCAGGCATGCAGGAACAGGTCCTTATTAGACAATTACTTGAGCTGCACACTAAGCAAATGGCATATGTCAATGACTGGTTATGA

Protein Analysis

1268

Amino Acids

147.59

Weight (kDa)

7.85

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cullin PF00888 32 - 261 6.5e-33 Cullin alpha solenoid domain
Cullin PF00888 251 - 447 4.7e-48 Cullin alpha solenoid domain
Cullin_AB PF26557 472 - 605 9.7e-44 Cullin alpha+beta domain
Cullin_Nedd8 PF10557 633 - 695 1.5e-24 Cullin protein neddylation domain
Cullin PF00888 854 - 1106 3.7e-42 Cullin alpha solenoid domain
Cullin PF00888 1184 - 1266 2e-07 Cullin alpha solenoid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1443, 2820
AasI GACNNNNNNGTC 1 cut(s) 1203
AccB1I GGYRCC 1 cut(s) 2172
AccII CGCG 3 cut(s) 2318, 2403, 2845
AclWI GGATC 8 cut(s) 23, 122, 151, 2155, 2328, 2341, 3284, 3585
AcoI YGGCCR 2 cut(s) 1433, 2516
AcsI RAATTY 8 cut(s) 50, 296, 904, 1181, 1251, 1713, 3337, 3518
AcuI CTGAAG 4 cut(s) 849, 1488, 2144, 2643
AfaI GTAC 9 cut(s) 208, 826, 2097, 2103, 2665, 3334, 3345, 3612, 3670
AfiI CCNNNNNNNGG 3 cut(s) 1855, 2809, 2935
AflIII ACRYGT 4 cut(s) 201, 263, 287, 2658
AjnI CCWGG 7 cut(s) 879, 2228, 2893, 3348, 3372, 3613, 3621
AloI GAACNNNNNNTCC 2 cut(s) 2593, 2625
Alw21I GWGCWC 4 cut(s) 777, 1285, 1738, 2136
Alw26I GTCTC 4 cut(s) 254, 1214, 1990, 2332
Alw44I GTGCAC 2 cut(s) 1281, 2132
AlwI GGATC 8 cut(s) 23, 122, 151, 2155, 2328, 2341, 3284, 3585
AlwNI CAGNNNCTG 1 cut(s) 3259
Ama87I CYCGRG 1 cut(s) 2329
AoxI GGCC 8 cut(s) 877, 1433, 2217, 2404, 2516, 2672, 3189, 3619
ApaLI GTGCAC 2 cut(s) 1281, 2132
ApoI RAATTY 8 cut(s) 50, 296, 904, 1181, 1251, 1713, 3337, 3518
Asp700I GAANNNNTTC 2 cut(s) 2288, 3408
AspLEI GCGC 5 cut(s) 489, 2037, 2320, 2429, 2847
AspS9I GGNCC 9 cut(s) 754, 892, 1237, 2218, 2405, 2673, 2794, 2915, 3742
AsuNHI GCTAGC 1 cut(s) 791
AvaI CYCGRG 1 cut(s) 2329
AvaII GGWCC 6 cut(s) 754, 892, 1237, 2794, 2915, 3742
BaeGI GKGCMC 3 cut(s) 1285, 2136, 2815
BalI TGGCCA 2 cut(s) 1435, 2518
BamHI GGATCC 1 cut(s) 2333
BanI GGYRCC 1 cut(s) 2172
BanII GRGCYC 3 cut(s) 777, 1559, 3499
BarI GAAGNNNNNNTAC 2 cut(s) 2085, 2117
BauI CACGAG 3 cut(s) 257, 1558, 1851
BbsI GAAGAC 1 cut(s) 2049
Bbv12I GWGCWC 4 cut(s) 777, 1285, 1738, 2136
BbvCI CCTCAGC 2 cut(s) 684, 819
BccI CCATC 9 cut(s) 87, 863, 1084, 1090, 1294, 1390, 2544, 2802, 3565
BciT130I CCWGG 7 cut(s) 881, 2230, 2895, 3350, 3374, 3615, 3623
BciVI GTATCC 1 cut(s) 2477
BcoDI GTCTC 4 cut(s) 254, 1214, 1990, 2332
BfaI CTAG 3 cut(s) 792, 2423, 3147
BfmI CTRYAG 5 cut(s) 462, 1186, 1364, 1647, 3363
BfoI RGCGCY 1 cut(s) 2430
BfuI GTATCC 1 cut(s) 2477
BglII AGATCT 1 cut(s) 2419
BmcAI AGTACT 1 cut(s) 2097
Bme1390I CCNGG 7 cut(s) 881, 2230, 2895, 3350, 3374, 3615, 3623
Bme18I GGWCC 6 cut(s) 754, 892, 1237, 2794, 2915, 3742
BmeT110I CYCGRG 1 cut(s) 2329
BmgT120I GGNCC 9 cut(s) 754, 892, 1237, 2218, 2405, 2673, 2794, 2915, 3742
BmiI GGNNCC 7 cut(s) 24, 2174, 2192, 2335, 2675, 2795, 3627
BmrFI CCNGG 7 cut(s) 881, 2230, 2895, 3350, 3374, 3615, 3623
BmtI GCTAGC 1 cut(s) 795
BoxI GACNNNNGTC 1 cut(s) 2688
BpiI GAAGAC 1 cut(s) 2049
BpmI CTGGAG 1 cut(s) 3636
Bpu10I CCTNAGC 4 cut(s) 125, 447, 684, 819
BpuEI CTTGAG 3 cut(s) 3223, 3648, 3782
BsaBI GATNNNNATC 1 cut(s) 1751
BsaJI CCNNGG 4 cut(s) 831, 2228, 2279, 3192
Bsc4I CCNNNNNNNGG 3 cut(s) 1855, 2809, 2935
Bse1I ACTGG 4 cut(s) 1429, 2103, 2492, 3803
Bse3DI GCAATG 5 cut(s) 721, 946, 1015, 1280, 2371
Bse8I GATNNNNATC 1 cut(s) 1751
BseBI CCWGG 7 cut(s) 881, 2230, 2895, 3350, 3374, 3615, 3623
BseDI CCNNGG 4 cut(s) 831, 2228, 2279, 3192
BseGI GGATG 6 cut(s) 98, 1401, 2108, 2555, 2779, 3203
BseJI GATNNNNATC 1 cut(s) 1751
BseLI CCNNNNNNNGG 3 cut(s) 1855, 2809, 2935
BseMI GCAATG 5 cut(s) 721, 946, 1015, 1280, 2371
BseMII CTCAG 7 cut(s) 675, 810, 1148, 1751, 2156, 2471, 2681
BseNI ACTGG 4 cut(s) 1429, 2103, 2492, 3803
BseRI GAGGAG 5 cut(s) 35, 701, 1058, 1619, 2579
BseSI GKGCMC 3 cut(s) 1285, 2136, 2815
BseYI CCCAGC 3 cut(s) 32, 1022, 2168
BsgI GTGCAG 2 cut(s) 167, 3752
Bsh1236I CGCG 3 cut(s) 2318, 2403, 2845
BshFI GGCC 8 cut(s) 879, 1435, 2219, 2406, 2518, 2674, 3191, 3621
BshNI GGYRCC 1 cut(s) 2172
BsiHKAI GWGCWC 4 cut(s) 777, 1285, 1738, 2136
BsiHKCI CYCGRG 1 cut(s) 2329
BsiSI CCGG 1 cut(s) 2337
BslFI GGGAC 2 cut(s) 296, 2807
BslI CCNNNNNNNGG 3 cut(s) 1855, 2809, 2935
BsmAI GTCTC 4 cut(s) 254, 1214, 1990, 2332
BsmBI CGTCTC 1 cut(s) 1214
BsmFI GGGAC 2 cut(s) 296, 2807
BsmI GAATGC 6 cut(s) 571, 1052, 2170, 2735, 3078, 3238
BsnI GGCC 8 cut(s) 879, 1435, 2219, 2406, 2518, 2674, 3191, 3621
BsoBI CYCGRG 1 cut(s) 2329
Bsp1286I GDGCHC 7 cut(s) 777, 1285, 1559, 1738, 2136, 2815, 3499
Bsp1407I TGTACA 1 cut(s) 3332
Bsp19I CCATGG 1 cut(s) 831
BspANI GGCC 8 cut(s) 879, 1435, 2219, 2406, 2518, 2674, 3191, 3621
BspCNI CTCAG 7 cut(s) 676, 811, 1149, 1750, 2155, 2470, 2680
BspFNI CGCG 3 cut(s) 2318, 2403, 2845
BspHI TCATGA 1 cut(s) 372
BspLI GGNNCC 7 cut(s) 24, 2174, 2192, 2335, 2675, 2795, 3627
BspMAI CTGCAG 3 cut(s) 1368, 1651, 3367
BspOI GCTAGC 1 cut(s) 795
BspPI GGATC 8 cut(s) 23, 122, 151, 2155, 2328, 2341, 3284, 3585
BspT107I GGYRCC 1 cut(s) 2172
BsrDI GCAATG 5 cut(s) 721, 946, 1015, 1280, 2371
BsrGI TGTACA 1 cut(s) 3332
BsrI ACTGG 4 cut(s) 1429, 2103, 2492, 3803
BssECI CCNNGG 4 cut(s) 831, 2228, 2279, 3192
BssSI CACGAG 3 cut(s) 257, 1558, 1851
BssT1I CCWWGG 2 cut(s) 831, 2279
Bst2BI CACGAG 3 cut(s) 257, 1558, 1851
Bst2UI CCWGG 7 cut(s) 881, 2230, 2895, 3350, 3374, 3615, 3623
Bst4CI ACNGT 7 cut(s) 562, 1408, 1414, 2647, 2756, 2839, 3651
Bst6I CTCTTC 4 cut(s) 1239, 1464, 1643, 2643
BstAUI TGTACA 1 cut(s) 3332
BstC8I GCNNGC 8 cut(s) 38, 695, 793, 877, 2350, 2354, 3727, 3731
BstDSI CCRYGG 1 cut(s) 831
BstF5I GGATG 6 cut(s) 98, 1401, 2108, 2555, 2779, 3203
BstFNI CGCG 3 cut(s) 2318, 2403, 2845
BstH2I RGCGCY 1 cut(s) 2430
BstHHI GCGC 5 cut(s) 489, 2037, 2320, 2429, 2847
BstMAI GTCTC 4 cut(s) 254, 1214, 1990, 2332
BstMWI GCNNNNNNNGC 7 cut(s) 772, 881, 925, 1230, 1531, 1916, 3775
BstNI CCWGG 7 cut(s) 881, 2230, 2895, 3350, 3374, 3615, 3623
BstPAI GACNNNNGTC 1 cut(s) 2688
BstSCI CCNGG 7 cut(s) 879, 2228, 2893, 3348, 3372, 3613, 3621
BstSFI CTRYAG 5 cut(s) 462, 1186, 1364, 1647, 3363
BstSLI GKGCMC 3 cut(s) 1285, 2136, 2815
BstUI CGCG 3 cut(s) 2318, 2403, 2845
BstV2I GAAGAC 1 cut(s) 2049
BstX2I RGATCY 5 cut(s) 28, 2147, 2333, 2419, 3577
BstYI RGATCY 5 cut(s) 28, 2147, 2333, 2419, 3577
BsuI GTATCC 1 cut(s) 2477
BsuRI GGCC 8 cut(s) 879, 1435, 2219, 2406, 2518, 2674, 3191, 3621
BtgI CCRYGG 1 cut(s) 831
BtgZI GCGATG 2 cut(s) 2390, 2849
BtsCI GGATG 6 cut(s) 98, 1401, 2108, 2555, 2779, 3203
BtsI GCAGTG 3 cut(s) 496, 522, 3253
BtsIMutI CAGTG 8 cut(s) 91, 496, 522, 567, 2652, 2761, 2844, 3253
Cac8I GCNNGC 8 cut(s) 38, 695, 793, 877, 2350, 2354, 3727, 3731
CaiI CAGNNNCTG 1 cut(s) 3259
CciI TCATGA 1 cut(s) 372
CfoI GCGC 5 cut(s) 489, 2037, 2320, 2429, 2847
Cfr13I GGNCC 9 cut(s) 754, 892, 1237, 2218, 2405, 2673, 2794, 2915, 3742
CseI GACGC 1 cut(s) 2460
CsiI ACCWGGT 1 cut(s) 3348
Csp6I GTAC 9 cut(s) 207, 825, 2096, 2102, 2664, 3333, 3344, 3611, 3669
CviQI GTAC 9 cut(s) 207, 825, 2096, 2102, 2664, 3333, 3344, 3611, 3669
DraI TTTAAA 4 cut(s) 802, 955, 3310, 3646
DrdI GACNNNNNNGTC 1 cut(s) 1203
DseDI GACNNNNNNGTC 1 cut(s) 1203
EaeI YGGCCR 2 cut(s) 1433, 2516
Eam1104I CTCTTC 4 cut(s) 1239, 1464, 1643, 2643
EarI CTCTTC 4 cut(s) 1239, 1464, 1643, 2643
Ecl136II GAGCTC 1 cut(s) 775
Eco130I CCWWGG 2 cut(s) 831, 2279
Eco147I AGGCCT 1 cut(s) 3621
Eco24I GRGCYC 3 cut(s) 777, 1559, 3499
Eco32I GATATC 1 cut(s) 3545
Eco47I GGWCC 6 cut(s) 754, 892, 1237, 2794, 2915, 3742
Eco53kI GAGCTC 1 cut(s) 775
Eco57I CTGAAG 4 cut(s) 849, 1488, 2144, 2643
Eco88I CYCGRG 1 cut(s) 2329
EcoICRI GAGCTC 1 cut(s) 775
EcoO109I RGGNCCY 4 cut(s) 892, 2673, 2794, 3742
EcoRI GAATTC 3 cut(s) 50, 1181, 1713
EcoRII CCWGG 7 cut(s) 879, 2228, 2893, 3348, 3372, 3613, 3621
EcoRV GATATC 1 cut(s) 3545
EcoT14I CCWWGG 2 cut(s) 831, 2279
EcoT22I ATGCAT 3 cut(s) 3049, 3078, 3240
EcoT38I GRGCYC 3 cut(s) 777, 1559, 3499
ErhI CCWWGG 2 cut(s) 831, 2279
Esp3I CGTCTC 1 cut(s) 1214
FalI AAGNNNNNCTT 4 cut(s) 1107, 1139, 3464, 3496
FaqI GGGAC 2 cut(s) 296, 2807
FauI CCCGC 1 cut(s) 330
FauNDI CATATG 4 cut(s) 930, 937, 3169, 3787
FokI GGATG 6 cut(s) 105, 1408, 2095, 2562, 2786, 3210
FriOI GRGCYC 3 cut(s) 777, 1559, 3499
FspBI CTAG 3 cut(s) 792, 2423, 3147
GlaI GCGC 5 cut(s) 488, 2036, 2319, 2428, 2846
GsaI CCCAGC 3 cut(s) 36, 1026, 2172
GsuI CTGGAG 1 cut(s) 3636
HaeII RGCGCY 1 cut(s) 2430
HaeIII GGCC 8 cut(s) 879, 1435, 2219, 2406, 2518, 2674, 3191, 3621
HapII CCGG 1 cut(s) 2337
HgaI GACGC 1 cut(s) 2460
HhaI GCGC 5 cut(s) 489, 2037, 2320, 2429, 2847
Hin6I GCGC 5 cut(s) 487, 2035, 2318, 2427, 2845
HinP1I GCGC 5 cut(s) 487, 2035, 2318, 2427, 2845
HincII GTYRAC 2 cut(s) 409, 2693
HindII GTYRAC 2 cut(s) 409, 2693
HindIII AAGCTT 3 cut(s) 1532, 2346, 2411
HinfI GANTC 8 cut(s) 64, 1503, 1747, 1840, 2310, 2635, 2767, 3164
HpaI GTTAAC 1 cut(s) 409
HpaII CCGG 1 cut(s) 2337
Hpy99I CGWCG 2 cut(s) 1209, 1703
HpyCH4III ACNGT 7 cut(s) 562, 1408, 1414, 2647, 2756, 2839, 3651
HpyCH4IV ACGT 2 cut(s) 1903, 2998
HpyF10VI GCNNNNNNNGC 7 cut(s) 772, 881, 925, 1230, 1531, 1916, 3775
HpySE526I ACGT 2 cut(s) 1903, 2998
HspAI GCGC 5 cut(s) 487, 2035, 2318, 2427, 2845
KspAI GTTAAC 1 cut(s) 409
MabI ACCWGGT 1 cut(s) 3348
MaeI CTAG 3 cut(s) 792, 2423, 3147
MaeII ACGT 2 cut(s) 1903, 2998
MflI RGATCY 5 cut(s) 28, 2147, 2333, 2419, 3577
MhlI GDGCHC 7 cut(s) 777, 1285, 1559, 1738, 2136, 2815, 3499
MlsI TGGCCA 2 cut(s) 1435, 2518
MluNI TGGCCA 2 cut(s) 1435, 2518
MlyI GAGTC 2 cut(s) 73, 2629
MmeI TCCRAC 6 cut(s) 620, 2368, 2893, 3131, 3243, 3298
Mox20I TGGCCA 2 cut(s) 1435, 2518
Mph1103I ATGCAT 3 cut(s) 3049, 3078, 3240
MroXI GAANNNNTTC 2 cut(s) 2288, 3408
MscI TGGCCA 2 cut(s) 1435, 2518
MslI CAYNNNNRTG 4 cut(s) 59, 1343, 1729, 3081
Msp20I TGGCCA 2 cut(s) 1435, 2518
MspA1I CMGCKG 1 cut(s) 2621
MspI CCGG 1 cut(s) 2337
MspR9I CCNGG 7 cut(s) 881, 2230, 2895, 3350, 3374, 3615, 3623
Mva1269I GAATGC 6 cut(s) 571, 1052, 2170, 2735, 3078, 3238
MvaI CCWGG 7 cut(s) 881, 2230, 2895, 3350, 3374, 3615, 3623
MvnI CGCG 3 cut(s) 2318, 2403, 2845
MwoI GCNNNNNNNGC 7 cut(s) 772, 881, 925, 1230, 1531, 1916, 3775
NcoI CCATGG 1 cut(s) 831
NdeI CATATG 4 cut(s) 930, 937, 3169, 3787
NheI GCTAGC 1 cut(s) 791
NlaIV GGNNCC 7 cut(s) 24, 2174, 2192, 2335, 2675, 2795, 3627
NmeAIII GCCGAG 1 cut(s) 3217
NmuCI GTSAC 6 cut(s) 1160, 1312, 1408, 2050, 2057, 2886
NsiI ATGCAT 3 cut(s) 3049, 3078, 3240
PaeI GCATGC 1 cut(s) 3733
PagI TCATGA 1 cut(s) 372
PceI AGGCCT 1 cut(s) 3621
PciI ACATGT 4 cut(s) 201, 263, 287, 2658
PcsI WCGNNNNNNNCGW 2 cut(s) 2272, 2995
PctI GAATGC 6 cut(s) 571, 1052, 2170, 2735, 3078, 3238
PdmI GAANNNNTTC 2 cut(s) 2288, 3408
PfeI GAWTC 6 cut(s) 1503, 1747, 1840, 2310, 2767, 3164
PflFI GACNNNGTC 3 cut(s) 2048, 2798, 3269
PfoI TCCNGGA 1 cut(s) 2893
PleI GAGTC 2 cut(s) 72, 2629
PpsI GAGTC 2 cut(s) 72, 2629
PpuMI RGGWCCY 3 cut(s) 892, 2794, 3742
PscI ACATGT 4 cut(s) 201, 263, 287, 2658
PshAI GACNNNNGTC 1 cut(s) 2688
PsiI TTATAA 2 cut(s) 1443, 2820
Psp124BI GAGCTC 1 cut(s) 777
Psp5II RGGWCCY 3 cut(s) 892, 2794, 3742
Psp6I CCWGG 7 cut(s) 879, 2228, 2893, 3348, 3372, 3613, 3621
PspFI CCCAGC 3 cut(s) 32, 1022, 2168
PspGI CCWGG 7 cut(s) 879, 2228, 2893, 3348, 3372, 3613, 3621
PspN4I GGNNCC 7 cut(s) 24, 2174, 2192, 2335, 2675, 2795, 3627
PspPI GGNCC 9 cut(s) 754, 892, 1237, 2218, 2405, 2673, 2794, 2915, 3742
PspPPI RGGWCCY 3 cut(s) 892, 2794, 3742
PstI CTGCAG 3 cut(s) 1368, 1651, 3367
PstNI CAGNNNCTG 1 cut(s) 3259
PsuI RGATCY 5 cut(s) 28, 2147, 2333, 2419, 3577
PsyI GACNNNGTC 3 cut(s) 2048, 2798, 3269
PvuII CAGCTG 1 cut(s) 2621
RsaI GTAC 9 cut(s) 208, 826, 2097, 2103, 2665, 3334, 3345, 3612, 3670
RsaNI GTAC 9 cut(s) 207, 825, 2096, 2102, 2664, 3333, 3344, 3611, 3669
RseI CAYNNNNRTG 4 cut(s) 59, 1343, 1729, 3081
SacI GAGCTC 1 cut(s) 777
Sau96I GGNCC 9 cut(s) 754, 892, 1237, 2218, 2405, 2673, 2794, 2915, 3742
ScaI AGTACT 1 cut(s) 2097
SchI GAGTC 2 cut(s) 73, 2629
ScrFI CCNGG 7 cut(s) 881, 2230, 2895, 3350, 3374, 3615, 3623
SduI GDGCHC 7 cut(s) 777, 1285, 1559, 1738, 2136, 2815, 3499
SexAI ACCWGGT 1 cut(s) 3348
SfcI CTRYAG 5 cut(s) 462, 1186, 1364, 1647, 3363
SinI GGWCC 6 cut(s) 754, 892, 1237, 2794, 2915, 3742
SmiMI CAYNNNNRTG 4 cut(s) 59, 1343, 1729, 3081
SmlI CTYRAG 3 cut(s) 3202, 3663, 3761
SmoI CTYRAG 3 cut(s) 3202, 3663, 3761
SphI GCATGC 1 cut(s) 3733
SseBI AGGCCT 1 cut(s) 3621
SspI AATATT 2 cut(s) 275, 3697
SspMI CTAG 3 cut(s) 792, 2423, 3147
SstI GAGCTC 1 cut(s) 777
StuI AGGCCT 1 cut(s) 3621
StyD4I CCNGG 7 cut(s) 879, 2228, 2893, 3348, 3372, 3613, 3621
StyI CCWWGG 2 cut(s) 831, 2279
TaaI ACNGT 7 cut(s) 562, 1408, 1414, 2647, 2756, 2839, 3651
TaiI ACGT 2 cut(s) 1906, 3001
TaqI TCGA 4 cut(s) 677, 838, 2259, 2541
TatI WGTACW 4 cut(s) 206, 2095, 2663, 3332
TauI GCSGC 6 cut(s) 1922, 1945, 2318, 2323, 2406, 2845
TfiI GAWTC 6 cut(s) 1503, 1747, 1840, 2310, 2767, 3164
TscAI CASTG 8 cut(s) 91, 496, 522, 567, 2652, 2761, 2844, 3253
TseFI GTSAC 6 cut(s) 1160, 1312, 1408, 2050, 2057, 2886
Tsp45I GTSAC 6 cut(s) 1160, 1312, 1408, 2050, 2057, 2886
TspGWI ACGGA 1 cut(s) 2918
TspRI CASTG 8 cut(s) 91, 496, 522, 567, 2652, 2761, 2844, 3253
Tth111I GACNNNGTC 3 cut(s) 2048, 2798, 3269
VneI GTGCAC 2 cut(s) 1281, 2132
VpaK11BI GGWCC 6 cut(s) 754, 892, 1237, 2794, 2915, 3742
XapI RAATTY 8 cut(s) 50, 296, 904, 1181, 1251, 1713, 3337, 3518
XcmI CCANNNNNNNNNTGG 1 cut(s) 3611
XmnI GAANNNNTTC 2 cut(s) 2288, 3408
XspI CTAG 3 cut(s) 792, 2423, 3147
ZrmI AGTACT 1 cut(s) 2097
Zsp2I ATGCAT 3 cut(s) 3049, 3078, 3240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.