MD03G1282100.v1.1

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
36271716 .. 36279018
7303 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1282100.v1.1.491

Sequence Viewer

Length: 2217 bp
ATGGAGCGCAAAGTTATTGAGTTGGATCAAGGATGGGACTATATGCAGAAGGGGATCACGAAGCTGAAGAAGATCCTAGAGGGGTTACCGGAGCCTCAGTTCAACTCAGAAGAATATATGATGCTTTACACAACCATCTATAACATGTGTACTCAGAAGCCCCCCAATGATTACTCTCAGCAGCTATATGACAAATATCGGGAGGCATTTGAGGAATACATTACTTCAACGGTGCTGCCTGCTCTTAGAGAGAAGCATGATGAGTTTATGCTGCGGGAGCTTGTTAAAAGATGGGCAAACCATAAACTGATGGTTAGGTGGCTATCACGCTTCTTTCATTACCTTGATCGTTACTTCATTGCAAGAAGGTCACTTCCTGCACTCAAGGAAGTTGGACTAACCTGCTTTCGTGATTTGGTTTATCGGGAGGTCAATGCTAATGCCAGAATTGCTGTTATTGGTCTTATTGATAAAGAACGTGAGGGAGAGCAGATTGATAGAGCACTATTGAAGAATGTGGTAGATATATTTGTTGAAATTGGAATGGGTCAAATGGAGTCTTATGAAGAGGACTTTGAAGCACACTTTCTACTAGATAGTGGTGAATACTATTCTCGTAAAGCAGCAAATTGGATTTTGACAGATTCTTGTCCGGAGTACATGTTGAAGGCAGAGGAATGCTTGAAAAGGGAGAAGGAGAGAGTTAATAACTACCTTCATTCAAGCAGTGAACAAAAGCTTGTGGAGAAAGTGCAACATGAGTTGTTGGTGGTTTATGCAACTCAACTGCTTGAGAAGGAGGGTTCTGGATGTCGTGCTTTACTGAGATTGGATAAGGCTGACGGTCTTTCTAGGATATTTAGACTTTACAACAAAATACCTAAAGGCTTGGACCCTGTTAGTCTTGTATTTAAACAGCATATTACTGCCGAAGGTACAGCCTTGGTTCAACAGGCTGAAGATGCTGCAGCTAACCAGGCTTCAGGTGGAGCTGGCACACAGGAACAGGCTCTTATCAAAAACATAATTGAGCTGCATGACAAGTATATGAAATATGTTGATGAAAGCTTTCAGAACCACACACTCTTTCACAAGGCTTTGAAAGAGGCTTTTGAGGTATTTTGCAATAAATCCGTTTCTGGGAGTTCAAGTGCTGAATTACTTGCTGGATTCTGTGATAATATCCTCAAGAAGGGTGGCAGTGATAAGTTGAGTGATGAGGCCATAGAAGAAATGCTTGAGAAGGTTGTTAAGCTGCTTGCTTATATCAGTGACAAAGACCTTTATGCAGAATTCTACAGGAAAAAACTAGCCCGTCGGTTACTTTTTGATCGGAGTGCCAATGAGGACCACGAAAGAAGTATTCTGACAAAGCTGAAGCAGCAATGTGGTGGACAGTTTACGTCAAAAATGGAGGGAATGGTCACAGATTTGACAATAGCTCGAGACAACCAGAAAGGGTTTGAGGAATATCTTCAAAGTAACCCTGCTGTAAATCCTGGGATGGACTTGACAGTCACTGTACTTACAACTGGCTACTGGCCAAGTTATAAATCGTTTGATCTTAACCTTCCTGAAGAGATGGTTAGGTGTGTTGAAGTTTTCAAGTCATTCTATGAAACAAAAACGAAACACCGGAAACTTACATGGATTTACTCATTGGGCACGTGCAATGTTACTGGCAAGTTTGACACCAGACCGATTGAATTGGTCGTGTCAACCTATCAGGCTGCTCTCTTGCTCCTCTTCAACAGTGCTGATAAATTGAGCTATTCAGAAATACTGACTCAGTTGAACCTTACTCACGACGACTTGGTTAGATTGCTTCATTCGCTCTCGTGTGCCAAGTACAAGATTCTCACCAAGCAGCCAATTACAAAGACCATCTCAACGAATGACAGCTTTGAATTCAACAAGAAGTTCACAGATAAAATGAGAAGAATTAAGATTCCTCTCCCACCAGTGGACGAAAGGAAGAAGGTGATTGAAGATGTTGACAAAGACCGGAGATATGCTATTGATGCTGCTATTGTTAGGATCATGAAGAGTCGAAAAGTTTTGGGTCATCAACAATTAGTCATGGAGTGCGTTGAGCAGCTGGGAAAAATGTTCAAGCCGGACATAAAAGCGATTAAGAAGCGGATTGAAGATCTCATCACTCGGGACTACCTGGAGAGGGACAAGGAAAACCCCAACATGTTCAAGTATCTTGCCTGA

Protein Analysis

739

Amino Acids

85.7

Weight (kDa)

7.52

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cullin PF00888 23 - 484 1.7e-130 Cullin alpha solenoid domain
Cullin_AB PF26557 508 - 641 5.9e-44 Cullin alpha+beta domain
Cullin_Nedd8 PF10557 668 - 730 1.4e-27 Cullin protein neddylation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1551
AasI GACNNNNNNGTC 1 cut(s) 1514
Acc36I ACCTGC 1 cut(s) 410
AccIII TCCGGA 1 cut(s) 652
AciI CCGC 2 cut(s) 274, 2140
AclWI GGATC 4 cut(s) 33, 62, 67, 2045
AcoI YGGCCR 1 cut(s) 1541
AcsI RAATTY 2 cut(s) 1292, 1907
AcuI CTGAAG 5 cut(s) 86, 966, 978, 1397, 1596
AcvI CACGTG 1 cut(s) 1668
AfaI GTAC 5 cut(s) 151, 659, 937, 1524, 1850
AfiI CCNNNNNNNGG 4 cut(s) 1140, 1192, 1963, 2176
AflIII ACRYGT 3 cut(s) 144, 660, 2196
AjnI CCWGG 3 cut(s) 975, 1498, 2169
AloI GAACNNNNNNTCC 2 cut(s) 83, 115
Alw21I GWGCWC 1 cut(s) 505
Alw26I GTCTC 1 cut(s) 1440
AlwI GGATC 4 cut(s) 33, 62, 67, 2045
AlwNI CAGNNNCTG 1 cut(s) 1520
Ama87I CYCGRG 2 cut(s) 1443, 2160
Aor13HI TCCGGA 1 cut(s) 652
AoxI GGCC 2 cut(s) 1221, 1541
ApoI RAATTY 2 cut(s) 1292, 1907
Asp700I GAANNNNTTC 2 cut(s) 1068, 1473
AspLEI GCGC 1 cut(s) 9
AspS9I GGNCC 2 cut(s) 892, 1348
AsuHPI GGTGA 3 cut(s) 614, 1852, 1993
AvaI CYCGRG 2 cut(s) 1443, 2160
AvaII GGWCC 2 cut(s) 892, 1348
BaeGI GKGCMC 1 cut(s) 1667
BalI TGGCCA 1 cut(s) 1543
BauI CACGAG 1 cut(s) 1837
BbrPI CACGTG 1 cut(s) 1668
Bbv12I GWGCWC 1 cut(s) 505
BccI CCATC 7 cut(s) 27, 143, 285, 304, 1498, 1576, 1892
BciT130I CCWGG 3 cut(s) 977, 1500, 2171
BcoDI GTCTC 1 cut(s) 1440
BfaI CTAG 4 cut(s) 77, 593, 852, 1310
BfmI CTRYAG 2 cut(s) 966, 1297
BfuAI ACCTGC 1 cut(s) 410
BglII AGATCT 1 cut(s) 2149
Bme1390I CCNGG 3 cut(s) 977, 1500, 2171
Bme18I GGWCC 2 cut(s) 892, 1348
BmeT110I CYCGRG 2 cut(s) 1443, 2160
BmgT120I GGNCC 2 cut(s) 892, 1348
BmiI GGNNCC 2 cut(s) 93, 894
BmrFI CCNGG 3 cut(s) 977, 1500, 2171
BmsI GCATC 3 cut(s) 111, 952, 2011
BpmI CTGGAG 1 cut(s) 2192
BpuEI CTTGAG 4 cut(s) 368, 812, 1172, 1259
BsaAI YACGTR 1 cut(s) 1668
BsaJI CCNNGG 2 cut(s) 942, 1499
BsaWI WCCGGW 4 cut(s) 88, 652, 1635, 2004
BsaXI ACNNNNNCTCC 6 cut(s) 83, 113, 647, 677, 1135, 1165
Bsc4I CCNNNNNNNGG 4 cut(s) 1140, 1192, 1963, 2176
Bse1I ACTGG 4 cut(s) 1537, 1544, 1684, 1961
Bse3DI GCAATG 3 cut(s) 357, 1391, 1678
BseAI TCCGGA 1 cut(s) 652
BseBI CCWGG 3 cut(s) 977, 1500, 2171
BseDI CCNNGG 2 cut(s) 942, 1499
BseGI GGATG 3 cut(s) 38, 815, 1509
BseLI CCNNNNNNNGG 4 cut(s) 1140, 1192, 1963, 2176
BseMI GCAATG 3 cut(s) 357, 1391, 1678
BseMII CTCAG 6 cut(s) 110, 120, 167, 191, 815, 1802
BseNI ACTGG 4 cut(s) 1537, 1544, 1684, 1961
BseRI GAGGAG 1 cut(s) 1733
BseSI GKGCMC 1 cut(s) 1667
BseYI CCCAGC 1 cut(s) 2098
BsgI GTGCAG 1 cut(s) 363
BshFI GGCC 2 cut(s) 1223, 1543
BsiHKAI GWGCWC 1 cut(s) 505
BsiHKCI CYCGRG 2 cut(s) 1443, 2160
BsiSI CCGG 5 cut(s) 89, 653, 1636, 2005, 2117
BslFI GGGAC 3 cut(s) 50, 2177, 2192
BslI CCNNNNNNNGG 4 cut(s) 1140, 1192, 1963, 2176
BsmAI GTCTC 1 cut(s) 1440
BsmFI GGGAC 3 cut(s) 50, 2177, 2192
BsmI GAATGC 1 cut(s) 683
BsnI GGCC 2 cut(s) 1223, 1543
BsoBI CYCGRG 2 cut(s) 1443, 2160
Bsp1286I GDGCHC 2 cut(s) 505, 1667
Bsp13I TCCGGA 1 cut(s) 652
Bsp143I GATC 8 cut(s) 25, 54, 72, 346, 1330, 1561, 2037, 2149
BspACI CCGC 2 cut(s) 274, 2140
BspANI GGCC 2 cut(s) 1223, 1543
BspCNI CTCAG 6 cut(s) 109, 119, 166, 190, 816, 1801
BspEI TCCGGA 1 cut(s) 652
BspHI TCATGA 1 cut(s) 2040
BspLI GGNNCC 2 cut(s) 93, 894
BspMAI CTGCAG 1 cut(s) 970
BspMI ACCTGC 1 cut(s) 410
BspPI GGATC 4 cut(s) 33, 62, 67, 2045
BsrDI GCAATG 3 cut(s) 357, 1391, 1678
BsrI ACTGG 4 cut(s) 1537, 1544, 1684, 1961
BssECI CCNNGG 2 cut(s) 942, 1499
BssMI GATC 8 cut(s) 25, 54, 72, 346, 1330, 1561, 2037, 2149
BssSI CACGAG 1 cut(s) 1837
BssT1I CCWWGG 1 cut(s) 942
Bst2BI CACGAG 1 cut(s) 1837
Bst2UI CCWGG 3 cut(s) 977, 1500, 2171
Bst4CI ACNGT 6 cut(s) 232, 845, 1398, 1516, 1522, 1754
Bst6I CTCTTC 4 cut(s) 561, 1572, 1751, 2039
BstBAI YACGTR 1 cut(s) 1668
BstC8I GCNNGC 3 cut(s) 240, 994, 1260
BstDEI CTNAG 7 cut(s) 96, 106, 153, 177, 245, 824, 1788
BstEII GGTNACC 1 cut(s) 84
BstENI CCTNNNNNAGG 1 cut(s) 1190
BstF5I GGATG 3 cut(s) 38, 815, 1509
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 8 cut(s) 28, 57, 75, 349, 1333, 1564, 2040, 2152
BstMAI GTCTC 1 cut(s) 1440
BstMBI GATC 8 cut(s) 25, 54, 72, 346, 1330, 1561, 2037, 2149
BstMWI GCNNNNNNNGC 7 cut(s) 277, 449, 962, 977, 1381, 1831, 2021
BstNI CCWGG 3 cut(s) 977, 1500, 2171
BstNSI RCATGY 3 cut(s) 148, 664, 2200
BstPI GGTNACC 1 cut(s) 84
BstSCI CCNGG 3 cut(s) 975, 1498, 2169
BstSFI CTRYAG 2 cut(s) 966, 1297
BstSLI GKGCMC 1 cut(s) 1667
BstX2I RGATCY 2 cut(s) 72, 2149
BstYI RGATCY 2 cut(s) 72, 2149
BsuRI GGCC 2 cut(s) 1223, 1543
BtsCI GGATG 3 cut(s) 38, 815, 1509
BtsI GCAGTG 2 cut(s) 733, 1207
BtsIMutI CAGTG 6 cut(s) 733, 1207, 1276, 1518, 1759, 1968
BveI ACCTGC 1 cut(s) 410
Cac8I GCNNGC 3 cut(s) 240, 994, 1260
CaiI CAGNNNCTG 1 cut(s) 1520
CciI TCATGA 1 cut(s) 2040
CfoI GCGC 1 cut(s) 9
Cfr13I GGNCC 2 cut(s) 892, 1348
Csp6I GTAC 5 cut(s) 150, 658, 936, 1523, 1849
CspCI CAANNNNNGTGG 2 cut(s) 1177, 1212
CviAII CATG 9 cut(s) 145, 257, 661, 758, 1037, 1647, 2041, 2080, 2197
CviQI GTAC 5 cut(s) 150, 658, 936, 1523, 1849
DdeI CTNAG 7 cut(s) 96, 106, 153, 177, 245, 824, 1788
DpnI GATC 8 cut(s) 27, 56, 74, 348, 1332, 1563, 2039, 2151
DpnII GATC 8 cut(s) 25, 54, 72, 346, 1330, 1561, 2037, 2149
DraI TTTAAA 1 cut(s) 913
DrdI GACNNNNNNGTC 1 cut(s) 1514
DseDI GACNNNNNNGTC 1 cut(s) 1514
EaeI YGGCCR 1 cut(s) 1541
Eam1104I CTCTTC 4 cut(s) 561, 1572, 1751, 2039
EarI CTCTTC 4 cut(s) 561, 1572, 1751, 2039
Eco130I CCWWGG 1 cut(s) 942
Eco47I GGWCC 2 cut(s) 892, 1348
Eco57I CTGAAG 5 cut(s) 86, 966, 978, 1397, 1596
Eco72I CACGTG 1 cut(s) 1668
Eco88I CYCGRG 2 cut(s) 1443, 2160
Eco91I GGTNACC 1 cut(s) 84
EcoNI CCTNNNNNAGG 1 cut(s) 1190
EcoO65I GGTNACC 1 cut(s) 84
EcoRI GAATTC 2 cut(s) 1292, 1907
EcoRII CCWGG 3 cut(s) 975, 1498, 2169
EcoT14I CCWWGG 1 cut(s) 942
ErhI CCWWGG 1 cut(s) 942
FaeI CATG 9 cut(s) 148, 260, 664, 761, 1040, 1650, 2044, 2083, 2200
FalI AAGNNNNNCTT 2 cut(s) 1221, 1253
FaqI GGGAC 3 cut(s) 50, 2177, 2192
FatI CATG 9 cut(s) 144, 256, 660, 757, 1036, 1646, 2040, 2079, 2196
FauI CCCGC 1 cut(s) 267
FokI GGATG 3 cut(s) 45, 822, 1516
FspBI CTAG 4 cut(s) 77, 593, 852, 1310
GlaI GCGC 1 cut(s) 8
GsaI CCCAGC 1 cut(s) 2102
GsuI CTGGAG 1 cut(s) 2192
HaeIII GGCC 2 cut(s) 1223, 1543
HapII CCGG 5 cut(s) 89, 653, 1636, 2005, 2117
HhaI GCGC 1 cut(s) 9
Hin1II CATG 9 cut(s) 148, 260, 664, 761, 1040, 1650, 2044, 2083, 2200
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HincII GTYRAC 2 cut(s) 1719, 1996
HindII GTYRAC 2 cut(s) 1719, 1996
HindIII AAGCTT 2 cut(s) 737, 1066
HinfI GANTC 7 cut(s) 557, 644, 1170, 1786, 1855, 1948, 2047
HpaII CCGG 5 cut(s) 89, 653, 1636, 2005, 2117
HphI GGTGA 3 cut(s) 614, 1852, 1993
Hpy166II GTNNAC 8 cut(s) 150, 731, 1394, 1401, 1719, 1923, 1966, 1996
Hpy188I TCNGA 6 cut(s) 109, 156, 1074, 1335, 1368, 1777
Hpy8I GTNNAC 8 cut(s) 150, 731, 1394, 1401, 1719, 1923, 1966, 1996
Hpy99I CGWCG 2 cut(s) 1320, 1811
HpyCH4III ACNGT 6 cut(s) 232, 845, 1398, 1516, 1522, 1754
HpyCH4IV ACGT 3 cut(s) 478, 1403, 1667
HpyF10VI GCNNNNNNNGC 7 cut(s) 277, 449, 962, 977, 1381, 1831, 2021
HpyF3I CTNAG 7 cut(s) 96, 106, 153, 177, 245, 824, 1788
HpySE526I ACGT 3 cut(s) 478, 1403, 1667
Hsp92II CATG 9 cut(s) 148, 260, 664, 761, 1040, 1650, 2044, 2083, 2200
HspAI GCGC 1 cut(s) 7
Kpn2I TCCGGA 1 cut(s) 652
Kzo9I GATC 8 cut(s) 25, 54, 72, 346, 1330, 1561, 2037, 2149
LmnI GCTCC 5 cut(s) 4, 91, 277, 989, 1746
LweI GCATC 3 cut(s) 111, 952, 2011
MaeI CTAG 4 cut(s) 77, 593, 852, 1310
MaeII ACGT 3 cut(s) 478, 1403, 1667
MaeIII GTNAC 9 cut(s) 84, 350, 369, 1271, 1320, 1423, 1481, 1516, 1675
MalI GATC 8 cut(s) 27, 56, 74, 348, 1332, 1563, 2039, 2151
MboI GATC 8 cut(s) 25, 54, 72, 346, 1330, 1561, 2037, 2149
MflI RGATCY 2 cut(s) 72, 2149
MhlI GDGCHC 2 cut(s) 505, 1667
MlsI TGGCCA 1 cut(s) 1543
MluNI TGGCCA 1 cut(s) 1543
MlyI GAGTC 3 cut(s) 566, 1780, 2056
MmeI TCCRAC 1 cut(s) 373
Mox20I TGGCCA 1 cut(s) 1543
MroI TCCGGA 1 cut(s) 652
MroXI GAANNNNTTC 2 cut(s) 1068, 1473
MscI TGGCCA 1 cut(s) 1543
MseI TTAA 7 cut(s) 285, 705, 912, 1251, 1566, 1944, 2133
Msp20I TGGCCA 1 cut(s) 1543
MspA1I CMGCKG 1 cut(s) 2098
MspI CCGG 5 cut(s) 89, 653, 1636, 2005, 2117
MspR9I CCNGG 3 cut(s) 977, 1500, 2171
Mva1269I GAATGC 1 cut(s) 683
MvaI CCWGG 3 cut(s) 977, 1500, 2171
MwoI GCNNNNNNNGC 7 cut(s) 277, 449, 962, 977, 1381, 1831, 2021
NdeII GATC 8 cut(s) 25, 54, 72, 346, 1330, 1561, 2037, 2149
NlaIII CATG 9 cut(s) 148, 260, 664, 761, 1040, 1650, 2044, 2083, 2200
NlaIV GGNNCC 2 cut(s) 93, 894
NmuCI GTSAC 4 cut(s) 369, 1271, 1423, 1516
NspI RCATGY 3 cut(s) 148, 664, 2200
PaeR7I CTCGAG 1 cut(s) 1443
PagI TCATGA 1 cut(s) 2040
PciI ACATGT 3 cut(s) 144, 660, 2196
PctI GAATGC 1 cut(s) 683
PdmI GAANNNNTTC 2 cut(s) 1068, 1473
PfeI GAWTC 4 cut(s) 644, 1170, 1855, 1948
PleI GAGTC 3 cut(s) 565, 1780, 2055
PmaCI CACGTG 1 cut(s) 1668
PmlI CACGTG 1 cut(s) 1668
PpsI GAGTC 3 cut(s) 565, 1780, 2055
Ppu21I YACGTR 1 cut(s) 1668
PscI ACATGT 3 cut(s) 144, 660, 2196
PsiI TTATAA 1 cut(s) 1551
Psp6I CCWGG 3 cut(s) 975, 1498, 2169
PspCI CACGTG 1 cut(s) 1668
PspEI GGTNACC 1 cut(s) 84
PspFI CCCAGC 1 cut(s) 2098
PspGI CCWGG 3 cut(s) 975, 1498, 2169
PspN4I GGNNCC 2 cut(s) 93, 894
PspPI GGNCC 2 cut(s) 892, 1348
PstI CTGCAG 1 cut(s) 970
PstNI CAGNNNCTG 1 cut(s) 1520
PsuI RGATCY 2 cut(s) 72, 2149
PvuII CAGCTG 1 cut(s) 2098
RsaI GTAC 5 cut(s) 151, 659, 937, 1524, 1850
RsaNI GTAC 5 cut(s) 150, 658, 936, 1523, 1849
SaqAI TTAA 7 cut(s) 285, 705, 912, 1251, 1566, 1944, 2133
Sau3AI GATC 8 cut(s) 25, 54, 72, 346, 1330, 1561, 2037, 2149
Sau96I GGNCC 2 cut(s) 892, 1348
SchI GAGTC 3 cut(s) 566, 1780, 2056
ScrFI CCNGG 3 cut(s) 977, 1500, 2171
SduI GDGCHC 2 cut(s) 505, 1667
SfaNI GCATC 3 cut(s) 111, 952, 2011
SfcI CTRYAG 2 cut(s) 966, 1297
Sfr274I CTCGAG 1 cut(s) 1443
SinI GGWCC 2 cut(s) 892, 1348
SlaI CTCGAG 1 cut(s) 1443
SmlI CTYRAG 5 cut(s) 383, 791, 1187, 1238, 1443
SmoI CTYRAG 5 cut(s) 383, 791, 1187, 1238, 1443
SsiI CCGC 2 cut(s) 274, 2140
SspMI CTAG 4 cut(s) 77, 593, 852, 1310
StyD4I CCNGG 3 cut(s) 975, 1498, 2169
StyI CCWWGG 1 cut(s) 942
TaaI ACNGT 6 cut(s) 232, 845, 1398, 1516, 1522, 1754
TaiI ACGT 3 cut(s) 481, 1406, 1670
TaqI TCGA 2 cut(s) 1444, 2050
TaqII GACCGA 1 cut(s) 1714
TatI WGTACW 4 cut(s) 149, 657, 1522, 1848
TfiI GAWTC 4 cut(s) 644, 1170, 1855, 1948
Tru1I TTAA 7 cut(s) 285, 705, 912, 1251, 1566, 1944, 2133
Tru9I TTAA 7 cut(s) 285, 705, 912, 1251, 1566, 1944, 2133
TscAI CASTG 6 cut(s) 733, 1207, 1276, 1525, 1759, 1968
TseFI GTSAC 4 cut(s) 369, 1271, 1423, 1516
Tsp45I GTSAC 4 cut(s) 369, 1271, 1423, 1516
TspDTI ATGAA 9 cut(s) 326, 346, 579, 707, 1064, 1077, 1632, 1817, 2057
TspGWI ACGGA 1 cut(s) 1123
TspRI CASTG 6 cut(s) 733, 1207, 1276, 1525, 1759, 1968
VpaK11BI GGWCC 2 cut(s) 892, 1348
XagI CCTNNNNNAGG 1 cut(s) 1190
XapI RAATTY 2 cut(s) 1292, 1907
XceI RCATGY 3 cut(s) 148, 664, 2200
XcmI CCANNNNNNNNNTGG 1 cut(s) 983
XhoI CTCGAG 1 cut(s) 1443
XmnI GAANNNNTTC 2 cut(s) 1068, 1473
XspI CTAG 4 cut(s) 77, 593, 852, 1310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.