Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000162

Physical Location & Seq

Genomic Coordinates Reverse (-)

22063723 .. 22067581

Gene Structure 3859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18294

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2259 bp

ATGGCGAGGGACTCAGGATATGGAATATTTGTGACTACAAAAACGGAACTCGAAGTTATCGAGTGGGATCAAGGATGGGACTATATGCAGAAGGGGTTCACAAAGCTGAAGAGAATTCTAGAAGGATTGTCAGAGTCTCAGTTTACATCAGAAGAAAATATGATGCTTTACACAACTATCTATAACATGTGTACTCAGAAGCCCCCATATGATTATTCTTGGCAACTTTATGACAAGTACCGGGAGGTATTGGATGAATACATTACTTCAGCGGTTTTGCCCTCTTTAAGAAACAAGCATGATGAGTTTCTTCTGCTGGAGTTTGTAAAAAGATGGGAAACTCATAAGGTTATGGTGAGGTGGCTATCATTCTTCTTTAATTATCTTGACCGTTTCTTTGTCTGTCGAAGATCACTTCCTAAGCTAAGGGAAGTTGGACTTACCCGCTTCCGTGATTTGGTTTATCGGGCTGTGAAGGCTAATGTGAGAGCTGCTGTTATTGCTATTATTAATCAAGAACGTGAGGGGGAGCAGATTGACATTGCACTATTGAAGAATGTGGTAAATATATTTGTTGAAATGGGCATGGGACAAACTGATGCTTATGAAGAAGACTTTGAAGCTCACATGCTACAAGCTACATCTGAGTACTATTCTCGTAGAGCATCAAGTTGGATTTTGGAGGATTCGTGTCCAGAGTACATATCGAAGGCAGAGGAATGCTTGAGAAGGGAAAGAGATAGAGTTTCTCATTACCTGCATTCAAGTAGTGAGCAGAAGCTGATAGAGAAAGTACAATTCGAGTTGTTAGTGGTTTATTCAGGTCCACTGCTTGAAAAGGACATTTCTGGATGTCGTGCTTTGCTTAGAGATGATCAGGTGGAGGATCTTTCAAGGATGTATAGACTTTATAATAAGATTCCACGAGGCTTGGAACCGATTGCCAGGTTGTTTAGAGAGCATGTTATTGCTGAAGGTATAACCTTGGTCCAACAGACTGAAAATGCTGCAAATGACCACTCTTCAAATGGATCTGGAATGCGGGAACAAATTTATGTCAAAGAAATAGCCGAGCTGCATGATAAGTTTATGGCATACGTCAGTGATTGCTTTATGAACCACTCTCTCCTTCGCAGGGCTATCAAAGAAGCTTTTGAGTTCATTTGCAATAAAACTGTTGCAGGGAGTTCTTGTGCTGAATTACTTGTAGCACTATGTGATAATATCCTCAAAACAGGTGGCCGTGAGAAGTCAAGTGATGAGGCTGTCGAAGAAACTCTTGAGAAGGTTGTTAAGCTGCTTCCTTATATCAGTGACAAAAACCTTTTTGCAGAATTCTACAGGAAAAAACTTGCTCGTCGGCTACTTTTTAATCAGAGTTCGAATGAGGACCTTGAAAAGAGTACTTTAGGAAAGCTGAAGCAGCAATGTGGTGGACAGTTTACCTCAAAGATGGAGGGGATGGTCACTGATTTGACATTGGCTCGGGAGAATCGGACTGGCTTTGAGGAATATCTTCACAGTAATCCAAATGTGAATCCTGGGATGGATTTGACAGTCACTGTTCTTACAACTGGCTTCTGGCCAAGTTATAAATCATTTGATCTTAACCTTCCTGCAGAACTTGTCAAGTGTGTTGAAGTTTTCAAGGGATTCTATGAAACAAAAACAAAAAACAGAAAACTTACATGGATTTACTCATTGGGCACTTGCAACATCATTGGGAAGTTTGAGGCAAAAGTGATTGAATTGGTTGCATCCACCTACCAGGCTGCTCTCCTGCTGTTGTTCAATTGTGCGGATAGATGGAGCTATTCAGAAATATTCACTCAGTTGAACCTTAACCATGATGACTTGGTTAGAATTCTTCACTCGCTGTCATGTGCCAAGTACAAGATCCTTGTTAAGGAGCCAAATACAAACACTATCTTGCCAAATGACACCTTTGAGTTCAACTCTAAGTTCACACACAAAATGAGAAGAATTAAGATTCCTCTCCCACCAGTGGATGAAACGAAGGAGGTAATCGAAGATGTTGACAAAGATAAACGATATGCTATTGATGCTGCAGTTGTGCGGATAATGAAGAGTCGTAAAGCTTTGCGTCATCATGAATTAGTTGTGGGGTGTGTCGAGCAGTTGGAACATATGTTCAAGCCTGACATCCGAGCAATTAAGAAGCGCATTGAAGATCTCATCGCCCGTGACTACCTGGAGAGGGACAAGGAAAACCTTAAGATGATCAGGTATCTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000228 GO:0000793 GO:0000794 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009524 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010154 GO:0015630 GO:0019899 GO:0022414 GO:0023052 GO:0031461 GO:0031625 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0099402 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Cullin Cullin_Nedd8

Protein Analysis

752

Amino Acids

87.68

Weight (kDa)

6.52

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin	PF00888	36 - 497	3.8e-120	Cullin alpha solenoid domain
Cullin_AB	PF26557	522 - 655	2.6e-41	Cullin alpha+beta domain
Cullin_Nedd8	PF10557	682 - 744	2.5e-24	Cullin protein neddylation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca	FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica	MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica	Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis	pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis	RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata	RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora	Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa	Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha	Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana	Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	912, 1593
Acc36I	ACCTGC	1 cut(s)	765
AciI	CCGC	5 cut(s)	272, 445, 1042, 1799, 2077
AclWI	GGATC	4 cut(s)	75, 894, 1039, 1891
AcoI	YGGCCR	2 cut(s)	1240, 1583
AcsI	RAATTY	4 cut(s)	114, 1050, 1334, 1863
AcuI	CTGAAG	4 cut(s)	128, 252, 993, 1439
AdeI	CACNNNGTG	1 cut(s)	1217
AfaI	GTAC	7 cut(s)	193, 239, 650, 701, 795, 1405, 1892
AfiI	CCNNNNNNNGG	5 cut(s)	457, 1135, 1906, 2005, 2218
AflII	CTTAAG	1 cut(s)	2234
AflIII	ACRYGT	1 cut(s)	186
AjnI	CCWGG	4 cut(s)	944, 1540, 1767, 2211
AloI	GAACNNNNNNTCC	2 cut(s)	2135, 2167
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	4 cut(s)	75, 894, 1039, 1891
AlwNI	CAGNNNCTG	2 cut(s)	781, 1562
Ama87I	CYCGRG	1 cut(s)	1485
AoxI	GGCC	2 cut(s)	1240, 1583
ApeKI	GCWGC	7 cut(s)	491, 1007, 1075, 1297, 1423, 1772, 2066
ApoI	RAATTY	4 cut(s)	114, 1050, 1334, 1863
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
AseI	ATTAAT	1 cut(s)	510
Asp700I	GAANNNNTTC	2 cut(s)	95, 1515
AspLEI	GCGC	1 cut(s)	2184
AspS9I	GGNCC	3 cut(s)	824, 988, 1390
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	367
AsuII	TTCGAA	1 cut(s)	1382
AvaI	CYCGRG	1 cut(s)	1485
AvaII	GGWCC	3 cut(s)	824, 988, 1390
BaeGI	GKGCMC	1 cut(s)	1709
BalI	TGGCCA	1 cut(s)	1585
BauI	CACGAG	1 cut(s)	924
BbsI	GAAGAC	1 cut(s)	618
BbvI	GCAGC	7 cut(s)	478, 994, 1062, 1284, 1435, 1759, 2053
BccI	CCATC	6 cut(s)	69, 327, 1447, 1456, 1540, 1800
BceAI	ACGGC	1 cut(s)	1227
BciT130I	CCWGG	4 cut(s)	946, 1542, 1769, 2213
BclI	TGATCA	2 cut(s)	874, 2241
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	3 cut(s)	1339, 1617, 2067
BfrI	CTTAAG	1 cut(s)	2234
BfuAI	ACCTGC	1 cut(s)	765
BglII	AGATCT	1 cut(s)	2191
BisI	GCNGC	7 cut(s)	492, 1008, 1076, 1298, 1424, 1773, 2067
BlsI	GCNGC	7 cut(s)	493, 1009, 1077, 1299, 1425, 1774, 2068
BmcAI	AGTACT	2 cut(s)	650, 1405
Bme1390I	CCNGG	5 cut(s)	242, 946, 1542, 1769, 2213
Bme18I	GGWCC	3 cut(s)	824, 988, 1390
BmeT110I	CYCGRG	1 cut(s)	1485
BmgT120I	GGNCC	3 cut(s)	824, 988, 1390
BmiI	GGNNCC	2 cut(s)	936, 1911
BmrFI	CCNGG	5 cut(s)	242, 946, 1542, 1769, 2213
BmsI	GCATC	5 cut(s)	153, 589, 674, 1766, 2053
BpiI	GAAGAC	1 cut(s)	618
BplI	GAGNNNNNCTC	2 cut(s)	1940, 1972
BpmI	CTGGAG	2 cut(s)	338, 2234
Bpu10I	CCTNAGC	2 cut(s)	420, 425
Bpu14I	TTCGAA	1 cut(s)	1382
BpuEI	CTTGAG	2 cut(s)	745, 1301
BpuMI	CCSGG	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	984, 1541
BsaXI	ACNNNNNCTCC	4 cut(s)	674, 704, 1177, 1207
Bsc4I	CCNNNNNNNGG	5 cut(s)	457, 1135, 1906, 2005, 2218
Bse1I	ACTGG	3 cut(s)	1504, 1579, 2003
Bse3DI	GCAATG	2 cut(s)	540, 1433
BseBI	CCWGG	4 cut(s)	946, 1542, 1769, 2213
BseDI	CCNNGG	2 cut(s)	984, 1541
BseGI	GGATG	9 cut(s)	80, 259, 857, 903, 1467, 1551, 1757, 2014, 2163
BseLI	CCNNNNNNNGG	5 cut(s)	457, 1135, 1906, 2005, 2218
BseMI	GCAATG	2 cut(s)	540, 1433
BseMII	CTCAG	5 cut(s)	27, 152, 209, 636, 1844
BseNI	ACTGG	3 cut(s)	1504, 1579, 2003
BseSI	GKGCMC	1 cut(s)	1709
BseXI	GCAGC	7 cut(s)	478, 994, 1062, 1284, 1435, 1759, 2053
BshFI	GGCC	2 cut(s)	1242, 1585
BsiHKCI	CYCGRG	1 cut(s)	1485
BsiSI	CCGG	1 cut(s)	241
BslFI	GGGAC	4 cut(s)	23, 92, 603, 2234
BslI	CCNNNNNNNGG	5 cut(s)	457, 1135, 1906, 2005, 2218
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	4 cut(s)	23, 92, 603, 2234
BsmI	GAATGC	3 cut(s)	725, 760, 1044
BsnI	GGCC	2 cut(s)	1242, 1585
BsoBI	CYCGRG	1 cut(s)	1485
Bsp119I	TTCGAA	1 cut(s)	1382
Bsp1286I	GDGCHC	1 cut(s)	1709
Bsp143I	GATC	9 cut(s)	67, 410, 874, 886, 1031, 1603, 1896, 2191, 2241
BspACI	CCGC	5 cut(s)	272, 445, 1042, 1799, 2077
BspANI	GGCC	2 cut(s)	1242, 1585
BspCNI	CTCAG	5 cut(s)	26, 151, 208, 637, 1843
BspHI	TCATGA	1 cut(s)	2110
BspLI	GGNNCC	2 cut(s)	936, 1911
BspMAI	CTGCAG	2 cut(s)	1621, 2071
BspMI	ACCTGC	1 cut(s)	765
BspPI	GGATC	4 cut(s)	75, 894, 1039, 1891
BspT104I	TTCGAA	1 cut(s)	1382
BspTI	CTTAAG	1 cut(s)	2234
BsrDI	GCAATG	2 cut(s)	540, 1433
BsrI	ACTGG	3 cut(s)	1504, 1579, 2003
BssECI	CCNNGG	2 cut(s)	984, 1541
BssMI	GATC	9 cut(s)	67, 410, 874, 886, 1031, 1603, 1896, 2191, 2241
BssSI	CACGAG	1 cut(s)	924
BssT1I	CCWWGG	1 cut(s)	984
Bst2BI	CACGAG	1 cut(s)	924
Bst2UI	CCWGG	4 cut(s)	946, 1542, 1769, 2213
Bst4CI	ACNGT	6 cut(s)	392, 1177, 1440, 1523, 1558, 1564
Bst6I	CTCTTC	3 cut(s)	104, 1027, 2081
BstAFI	CTTAAG	1 cut(s)	2234
BstBI	TTCGAA	1 cut(s)	1382
BstDEI	CTNAG	9 cut(s)	13, 138, 195, 420, 425, 645, 866, 1830, 1959
BstENI	CCTNNNNNAGG	1 cut(s)	1904
BstF5I	GGATG	9 cut(s)	80, 259, 857, 903, 1467, 1551, 1757, 2014, 2163
BstHHI	GCGC	1 cut(s)	2184
BstKTI	GATC	9 cut(s)	70, 413, 877, 889, 1034, 1606, 1899, 2194, 2244
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	9 cut(s)	67, 410, 874, 886, 1031, 1603, 1896, 2191, 2241
BstMWI	GCNNNNNNNGC	4 cut(s)	476, 500, 1423, 2063
BstNI	CCWGG	4 cut(s)	946, 1542, 1769, 2213
BstNSI	RCATGY	3 cut(s)	190, 631, 965
BstSCI	CCNGG	5 cut(s)	240, 944, 1540, 1767, 2211
BstSFI	CTRYAG	3 cut(s)	1339, 1617, 2067
BstSLI	GKGCMC	1 cut(s)	1709
BstV1I	GCAGC	7 cut(s)	478, 994, 1062, 1284, 1435, 1759, 2053
BstV2I	GAAGAC	1 cut(s)	618
BstX2I	RGATCY	4 cut(s)	886, 1031, 1896, 2191
BstYI	RGATCY	4 cut(s)	886, 1031, 1896, 2191
BsuRI	GGCC	2 cut(s)	1242, 1585
BtgZI	GCGATG	1 cut(s)	2182
BtsCI	GGATG	9 cut(s)	80, 259, 857, 903, 1467, 1551, 1757, 2014, 2163
BtsI	GCAGTG	1 cut(s)	827
BtsIMutI	CAGTG	6 cut(s)	827, 1108, 1318, 1467, 1560, 2010
BveI	ACCTGC	1 cut(s)	765
CaiI	CAGNNNCTG	2 cut(s)	781, 1562
CciI	TCATGA	1 cut(s)	2110
CfoI	GCGC	1 cut(s)	2184
Cfr13I	GGNCC	3 cut(s)	824, 988, 1390
CseI	GACGC	1 cut(s)	2093
Csp6I	GTAC	7 cut(s)	192, 238, 649, 700, 794, 1404, 1891
CspCI	CAANNNNNGTGG	4 cut(s)	912, 947, 1219, 1254
CviQI	GTAC	7 cut(s)	192, 238, 649, 700, 794, 1404, 1891
DdeI	CTNAG	9 cut(s)	13, 138, 195, 420, 425, 645, 866, 1830, 1959
DpnI	GATC	9 cut(s)	69, 412, 876, 888, 1033, 1605, 1898, 2193, 2243
DpnII	GATC	9 cut(s)	67, 410, 874, 886, 1031, 1603, 1896, 2191, 2241
DraIII	CACNNNGTG	1 cut(s)	1217
EaeI	YGGCCR	2 cut(s)	1240, 1583
Eam1104I	CTCTTC	3 cut(s)	104, 1027, 2081
EarI	CTCTTC	3 cut(s)	104, 1027, 2081
Eco130I	CCWWGG	1 cut(s)	984
Eco47I	GGWCC	3 cut(s)	824, 988, 1390
Eco57I	CTGAAG	4 cut(s)	128, 252, 993, 1439
Eco88I	CYCGRG	1 cut(s)	1485
EcoNI	CCTNNNNNAGG	1 cut(s)	1904
EcoO109I	RGGNCCY	1 cut(s)	1390
EcoRI	GAATTC	3 cut(s)	114, 1334, 1863
EcoRII	CCWGG	4 cut(s)	944, 1540, 1767, 2211
EcoT14I	CCWWGG	1 cut(s)	984
ErhI	CCWWGG	1 cut(s)	984
FalI	AAGNNNNNCTT	4 cut(s)	423, 455, 1263, 1295
FaqI	GGGAC	4 cut(s)	23, 92, 603, 2234
FauI	CCCGC	2 cut(s)	452, 1035
FauNDI	CATATG	2 cut(s)	208, 2148
FbaI	TGATCA	2 cut(s)	874, 2241
Fnu4HI	GCNGC	7 cut(s)	492, 1008, 1076, 1298, 1424, 1773, 2067
FokI	GGATG	9 cut(s)	87, 266, 864, 910, 1474, 1558, 1744, 2021, 2150
Fsp4HI	GCNGC	7 cut(s)	492, 1008, 1076, 1298, 1424, 1773, 2067
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	2183
GluI	GCNGC	7 cut(s)	492, 1008, 1076, 1298, 1424, 1773, 2067
GsuI	CTGGAG	2 cut(s)	338, 2234
HaeIII	GGCC	2 cut(s)	1242, 1585
HapII	CCGG	1 cut(s)	241
HgaI	GACGC	1 cut(s)	2093
HhaI	GCGC	1 cut(s)	2184
Hin6I	GCGC	1 cut(s)	2182
HinP1I	GCGC	1 cut(s)	2182
HincII	GTYRAC	1 cut(s)	2038
HindII	GTYRAC	1 cut(s)	2038
HindIII	AAGCTT	2 cut(s)	1149, 2097
HinfI	GANTC	9 cut(s)	11, 134, 686, 919, 1492, 1537, 1653, 1990, 2089
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	8 cut(s)	99, 144, 192, 827, 1436, 1443, 1965, 2038
Hpy188I	TCNGA	8 cut(s)	133, 151, 198, 646, 1377, 1497, 1819, 2168
Hpy8I	GTNNAC	8 cut(s)	99, 144, 192, 827, 1436, 1443, 1965, 2038
Hpy99I	CGWCG	1 cut(s)	1362
HpyCH4III	ACNGT	6 cut(s)	392, 1177, 1440, 1523, 1558, 1564
HpyCH4IV	ACGT	2 cut(s)	520, 1098
HpyF10VI	GCNNNNNNNGC	4 cut(s)	476, 500, 1423, 2063
HpyF3I	CTNAG	9 cut(s)	13, 138, 195, 420, 425, 645, 866, 1830, 1959
HpySE526I	ACGT	2 cut(s)	520, 1098
HspAI	GCGC	1 cut(s)	2182
Ksp22I	TGATCA	2 cut(s)	874, 2241
Kzo9I	GATC	9 cut(s)	67, 410, 874, 886, 1031, 1603, 1896, 2191, 2241
LmnI	GCTCC	3 cut(s)	529, 1809, 1909
Lsp1109I	GCAGC	7 cut(s)	478, 994, 1062, 1284, 1435, 1759, 2053
LweI	GCATC	5 cut(s)	153, 589, 674, 1766, 2053
MaeI	CTAG	1 cut(s)	119
MaeII	ACGT	2 cut(s)	520, 1098
MaeIII	GTNAC	5 cut(s)	31, 1313, 1465, 1558, 2204
MalI	GATC	9 cut(s)	69, 412, 876, 888, 1033, 1605, 1898, 2193, 2243
MboI	GATC	9 cut(s)	67, 410, 874, 886, 1031, 1603, 1896, 2191, 2241
MfeI	CAATTG	1 cut(s)	1792
MflI	RGATCY	4 cut(s)	886, 1031, 1896, 2191
MhlI	GDGCHC	1 cut(s)	1709
MlsI	TGGCCA	1 cut(s)	1585
MluNI	TGGCCA	1 cut(s)	1585
MlyI	GAGTC	3 cut(s)	5, 143, 2098
MmeI	TCCRAC	4 cut(s)	415, 653, 1015, 2121
Mox20I	TGGCCA	1 cut(s)	1585
MroXI	GAANNNNTTC	2 cut(s)	95, 1515
MscI	TGGCCA	1 cut(s)	1585
Msp20I	TGGCCA	1 cut(s)	1585
MspA1I	CMGCKG	1 cut(s)	272
MspCI	CTTAAG	1 cut(s)	2234
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	5 cut(s)	242, 946, 1542, 1769, 2213
MunI	CAATTG	1 cut(s)	1792
Mva1269I	GAATGC	3 cut(s)	725, 760, 1044
MvaI	CCWGG	4 cut(s)	946, 1542, 1769, 2213
MwoI	GCNNNNNNNGC	4 cut(s)	476, 500, 1423, 2063
NciI	CCSGG	1 cut(s)	242
NdeI	CATATG	2 cut(s)	208, 2148
NdeII	GATC	9 cut(s)	67, 410, 874, 886, 1031, 1603, 1896, 2191, 2241
NlaIV	GGNNCC	2 cut(s)	936, 1911
NmeAIII	GCCGAG	1 cut(s)	1096
NmuCI	GTSAC	5 cut(s)	31, 1313, 1465, 1558, 2204
NspI	RCATGY	3 cut(s)	190, 631, 965
NspV	TTCGAA	1 cut(s)	1382
PagI	TCATGA	1 cut(s)	2110
PciI	ACATGT	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	3 cut(s)	725, 760, 1044
PdmI	GAANNNNTTC	2 cut(s)	95, 1515
PfeI	GAWTC	6 cut(s)	686, 919, 1492, 1537, 1653, 1990
PkrI	GCNGC	7 cut(s)	493, 1009, 1077, 1299, 1425, 1774, 2068
PleI	GAGTC	3 cut(s)	5, 142, 2097
PpsI	GAGTC	3 cut(s)	5, 142, 2097
PpuMI	RGGWCCY	1 cut(s)	1390
PscI	ACATGT	1 cut(s)	186
PshBI	ATTAAT	1 cut(s)	510
PsiI	TTATAA	2 cut(s)	912, 1593
Psp5II	RGGWCCY	1 cut(s)	1390
Psp6I	CCWGG	4 cut(s)	944, 1540, 1767, 2211
PspGI	CCWGG	4 cut(s)	944, 1540, 1767, 2211
PspN4I	GGNNCC	2 cut(s)	936, 1911
PspPI	GGNCC	3 cut(s)	824, 988, 1390
PspPPI	RGGWCCY	1 cut(s)	1390
PstI	CTGCAG	2 cut(s)	1621, 2071
PstNI	CAGNNNCTG	2 cut(s)	781, 1562
PsuI	RGATCY	4 cut(s)	886, 1031, 1896, 2191
RsaI	GTAC	7 cut(s)	193, 239, 650, 701, 795, 1405, 1892
RsaNI	GTAC	7 cut(s)	192, 238, 649, 700, 794, 1404, 1891
SatI	GCNGC	7 cut(s)	492, 1008, 1076, 1298, 1424, 1773, 2067
Sau3AI	GATC	9 cut(s)	67, 410, 874, 886, 1031, 1603, 1896, 2191, 2241
Sau96I	GGNCC	3 cut(s)	824, 988, 1390
ScaI	AGTACT	2 cut(s)	650, 1405
SchI	GAGTC	3 cut(s)	5, 143, 2098
ScrFI	CCNGG	5 cut(s)	242, 946, 1542, 1769, 2213
SduI	GDGCHC	1 cut(s)	1709
SfaNI	GCATC	5 cut(s)	153, 589, 674, 1766, 2053
SfcI	CTRYAG	3 cut(s)	1339, 1617, 2067
SfuI	TTCGAA	1 cut(s)	1382
SinI	GGWCC	3 cut(s)	824, 988, 1390
SmlI	CTYRAG	3 cut(s)	724, 1280, 2234
SmoI	CTYRAG	3 cut(s)	724, 1280, 2234
SsiI	CCGC	5 cut(s)	272, 445, 1042, 1799, 2077
SspI	AATATT	2 cut(s)	27, 1824
SspMI	CTAG	1 cut(s)	119
StyD4I	CCNGG	5 cut(s)	240, 944, 1540, 1767, 2211
StyI	CCWWGG	1 cut(s)	984
TaaI	ACNGT	6 cut(s)	392, 1177, 1440, 1523, 1558, 1564
TaiI	ACGT	2 cut(s)	523, 1101
TaqI	TCGA	9 cut(s)	51, 60, 406, 707, 801, 1269, 1382, 2028, 2133
TatI	WGTACW	6 cut(s)	191, 648, 699, 793, 1403, 1890
TfiI	GAWTC	6 cut(s)	686, 919, 1492, 1537, 1653, 1990
TscAI	CASTG	6 cut(s)	834, 1108, 1318, 1474, 1567, 2010
TseFI	GTSAC	5 cut(s)	31, 1313, 1465, 1558, 2204
TseI	GCWGC	7 cut(s)	491, 1007, 1075, 1297, 1423, 1772, 2066
Tsp45I	GTSAC	5 cut(s)	31, 1313, 1465, 1558, 2204
TspDTI	ATGAA	8 cut(s)	270, 621, 1130, 1150, 1674, 2025, 2099, 2127
TspGWI	ACGGA	2 cut(s)	59, 440
TspRI	CASTG	6 cut(s)	834, 1108, 1318, 1474, 1567, 2010
Vha464I	CTTAAG	1 cut(s)	2234
VpaK11BI	GGWCC	3 cut(s)	824, 988, 1390
VspI	ATTAAT	1 cut(s)	510
XagI	CCTNNNNNAGG	1 cut(s)	1904
XapI	RAATTY	4 cut(s)	114, 1050, 1334, 1863
XbaI	TCTAGA	1 cut(s)	118
XceI	RCATGY	3 cut(s)	190, 631, 965
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1025
XmnI	GAANNNNTTC	2 cut(s)	95, 1515
XspI	CTAG	1 cut(s)	119
ZrmI	AGTACT	2 cut(s)	650, 1405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.