Rmu_sc0000090.1_g000010

Belongs to the cullin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000090.1
OG0000162
Physical Location & Seq
Forward (+)
45712 .. 46688
977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000090.1_g000010.1.cds

Sequence Viewer

Length: 840 bp
ctgttggtgaaagtgcagcatgagttgttggtggtttattacacccaaatccttgataaggaggaatctggaagtcgggttttgcttcaaaatgataaggtggaggatttgtctagtatatataggctctaccttaatatacctataggcttggaacctgttgctagcatattcagagagcatgttactaatgaaggtaaagccttggtccaacaagctgaaaaggctgttgcaagtagtaatcagcaggcttcaagtggagctgaacaatatggacttgtgcttatccaaaaactaataaagctgcatgacaagtatttaggatatgtgactggttgctttatgaaccattcactctttcacaaggctctgaagcaagcttttgaggtggtttgcgataaatctattgtcgggagttctagtgccaaaatgcttgctgctttctgtgataatatcctcaaaatggctggaagtaagctgagcgaggaggccgtagaagaaaccctagaaaagctgaagcagcaatgtggtggacaattcacctccaagatggaaggaatgatcaccgatttgacagtgggtagagaatcactcaccaggtttggagagttcatcctagaaaagaatatatcgaaatcctgggctcaatttgtcagtcacggttctcacaaccagttactggcatggcaaagttacaaatcgtctgatctcaaccttcctgaagagatggtcaagtgtgttgaagttttcaaggatttctttaataaggaataccattgcagaaagctgtcatggatatactcactgggttcttccaacgtcgagggcaagtttgattag

Protein Analysis

279

Amino Acids

31.44

Weight (kDa)

6.28

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 679
AcuI CTGAAG 3 cut(s) 392, 536, 741
AfiI CCNNNNNNNGG 3 cut(s) 58, 463, 679
AgsI TTSAA 4 cut(s) 89, 255, 743, 751
AjnI CCWGG 2 cut(s) 596, 638
AluBI AGCT 7 cut(s) 218, 263, 304, 380, 478, 514, 787
AluI AGCT 7 cut(s) 218, 263, 304, 380, 478, 514, 787
AlwNI CAGNNNCTG 1 cut(s) 679
AoxI GGCC 1 cut(s) 489
ApeKI GCWGC 4 cut(s) 16, 304, 437, 520
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 4 cut(s) 19, 532, 556, 586
AsuNHI GCTAGC 1 cut(s) 164
AvaII GGWCC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 646
BbvI GCAGC 4 cut(s) 28, 291, 424, 532
BccI CCATC 2 cut(s) 544, 721
BceAI ACGGC 1 cut(s) 476
BciT130I CCWGG 2 cut(s) 598, 640
BclI TGATCA 1 cut(s) 561
BfaI CTAG 5 cut(s) 114, 165, 420, 506, 617
BfmI CTRYAG 1 cut(s) 144
BisI GCNGC 4 cut(s) 17, 305, 438, 521
BlpI GCTNAGC 1 cut(s) 479
BlsI GCNGC 4 cut(s) 18, 306, 439, 522
Bme1390I CCNGG 2 cut(s) 598, 640
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 2 cut(s) 598, 640
BmrI ACTGGG 1 cut(s) 815
BmtI GCTAGC 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 815
BplI GAGNNNNNCTC 2 cut(s) 576, 608
Bpu1102I GCTNAGC 1 cut(s) 479
BsaJI CCNNGG 2 cut(s) 204, 639
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 406, 436
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 463, 679
Bse1I ACTGG 4 cut(s) 337, 673, 684, 810
Bse3DI GCAATG 2 cut(s) 530, 775
BseBI CCWGG 2 cut(s) 598, 640
BseDI CCNNGG 2 cut(s) 204, 639
BseGI GGATG 1 cut(s) 612
BseLI CCNNNNNNNGG 3 cut(s) 58, 463, 679
BseMI GCAATG 2 cut(s) 530, 775
BseMII CTCAG 1 cut(s) 470
BseNI ACTGG 4 cut(s) 337, 673, 684, 810
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 4 cut(s) 28, 291, 424, 532
BsgI GTGCAG 1 cut(s) 35
BshFI GGCC 1 cut(s) 491
BslI CCNNNNNNNGG 3 cut(s) 58, 463, 679
BsnI GGCC 1 cut(s) 491
Bsp1286I GDGCHC 1 cut(s) 646
Bsp143I GATC 2 cut(s) 561, 706
Bsp1720I GCTNAGC 1 cut(s) 479
BspANI GGCC 1 cut(s) 491
BspCNI CTCAG 1 cut(s) 471
BspLI GGNNCC 1 cut(s) 156
BspOI GCTAGC 1 cut(s) 168
BsrDI GCAATG 2 cut(s) 530, 775
BsrI ACTGG 4 cut(s) 337, 673, 684, 810
BssECI CCNNGG 2 cut(s) 204, 639
BssMI GATC 2 cut(s) 561, 706
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 2 cut(s) 598, 640
Bst4CI ACNGT 2 cut(s) 577, 662
Bst6I CTCTTC 1 cut(s) 717
BstC8I GCNNGC 4 cut(s) 166, 249, 378, 435
BstDEI CTNAG 1 cut(s) 479
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 612
BstKTI GATC 2 cut(s) 564, 709
BstMBI GATC 2 cut(s) 561, 706
BstMWI GCNNNNNNNGC 2 cut(s) 224, 520
BstNI CCWGG 2 cut(s) 598, 640
BstNSI RCATGY 1 cut(s) 185
BstSCI CCNGG 2 cut(s) 596, 638
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 4 cut(s) 28, 291, 424, 532
BsuRI GGCC 1 cut(s) 491
BtsCI GGATG 1 cut(s) 612
BtsIMutI CAGTG 2 cut(s) 582, 803
Cac8I GCNNGC 4 cut(s) 166, 249, 378, 435
CaiI CAGNNNCTG 1 cut(s) 679
Cfr13I GGNCC 1 cut(s) 208
CsiI ACCWGGT 1 cut(s) 596
CviAII CATG 5 cut(s) 20, 182, 308, 684, 792
DdeI CTNAG 1 cut(s) 479
DpnI GATC 2 cut(s) 563, 708
DpnII GATC 2 cut(s) 561, 706
Eam1104I CTCTTC 1 cut(s) 717
EarI CTCTTC 1 cut(s) 717
Eco130I CCWWGG 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 646
Eco47I GGWCC 1 cut(s) 208
Eco57I CTGAAG 3 cut(s) 392, 536, 741
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoRII CCWGG 2 cut(s) 596, 638
EcoT14I CCWWGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 5 cut(s) 23, 185, 311, 687, 795
FalI AAGNNNNNCTT 2 cut(s) 743, 775
FatI CATG 5 cut(s) 19, 181, 307, 683, 791
FbaI TGATCA 1 cut(s) 561
Fnu4HI GCNGC 4 cut(s) 17, 305, 438, 521
FokI GGATG 1 cut(s) 599
FriOI GRGCYC 1 cut(s) 646
Fsp4HI GCNGC 4 cut(s) 17, 305, 438, 521
FspBI CTAG 5 cut(s) 114, 165, 420, 506, 617
GluI GCNGC 4 cut(s) 17, 305, 438, 521
HaeIII GGCC 1 cut(s) 491
Hin1II CATG 5 cut(s) 23, 185, 311, 687, 795
HindIII AAGCTT 1 cut(s) 378
HinfI GANTC 2 cut(s) 65, 587
HphI GGTGA 4 cut(s) 19, 532, 556, 586
Hpy166II GTNNAC 1 cut(s) 533
Hpy188I TCNGA 3 cut(s) 176, 372, 706
Hpy188III TCNNGA 3 cut(s) 69, 412, 719
Hpy8I GTNNAC 1 cut(s) 533
Hpy99I CGWCG 1 cut(s) 824
HpyAV CCTTC 3 cut(s) 188, 548, 725
HpyCH4III ACNGT 2 cut(s) 577, 662
HpyCH4IV ACGT 1 cut(s) 819
HpyCH4V TGCA 4 cut(s) 16, 233, 307, 780
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 520
HpyF3I CTNAG 1 cut(s) 479
HpySE526I ACGT 1 cut(s) 819
Hsp92II CATG 5 cut(s) 23, 185, 311, 687, 795
Ksp22I TGATCA 1 cut(s) 561
Kzo9I GATC 2 cut(s) 561, 706
LmnI GCTCC 1 cut(s) 260
Lsp1109I GCAGC 4 cut(s) 28, 291, 424, 532
MabI ACCWGGT 1 cut(s) 596
MaeI CTAG 5 cut(s) 114, 165, 420, 506, 617
MaeII ACGT 1 cut(s) 819
MaeIII GTNAC 5 cut(s) 184, 328, 656, 675, 692
MalI GATC 2 cut(s) 563, 708
MboI GATC 2 cut(s) 561, 706
MboII GAAGA 3 cut(s) 509, 734, 804
MhlI GDGCHC 1 cut(s) 646
MluCI AATT 2 cut(s) 536, 647
MmeI TCCRAC 2 cut(s) 235, 840
MnlI CCTC 8 cut(s) 55, 97, 379, 467, 478, 481, 553, 817
MseI TTAA 2 cut(s) 135, 762
MspR9I CCNGG 2 cut(s) 598, 640
MvaI CCWGG 2 cut(s) 598, 640
MwoI GCNNNNNNNGC 2 cut(s) 224, 520
NdeII GATC 2 cut(s) 561, 706
NheI GCTAGC 1 cut(s) 164
NlaIII CATG 5 cut(s) 23, 185, 311, 687, 795
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 2 cut(s) 328, 656
NspI RCATGY 1 cut(s) 185
PfeI GAWTC 2 cut(s) 65, 587
PflMI CCANNNNNTGG 1 cut(s) 679
PkrI GCNGC 4 cut(s) 18, 306, 439, 522
Psp6I CCWGG 2 cut(s) 596, 638
PspGI CCWGG 2 cut(s) 596, 638
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 208
PstNI CAGNNNCTG 1 cut(s) 679
SaqAI TTAA 2 cut(s) 135, 762
SatI GCNGC 4 cut(s) 17, 305, 438, 521
Sau3AI GATC 2 cut(s) 561, 706
Sau96I GGNCC 1 cut(s) 208
ScrFI CCNGG 2 cut(s) 598, 640
SduI GDGCHC 1 cut(s) 646
SexAI ACCWGGT 1 cut(s) 596
SfcI CTRYAG 1 cut(s) 144
SinI GGWCC 1 cut(s) 208
Sse9I AATT 2 cut(s) 536, 647
SspMI CTAG 5 cut(s) 114, 165, 420, 506, 617
StyD4I CCNGG 2 cut(s) 596, 638
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 577, 662
TaiI ACGT 1 cut(s) 822
TaqI TCGA 2 cut(s) 632, 822
TasI AATT 2 cut(s) 536, 647
TfiI GAWTC 2 cut(s) 65, 587
Tru1I TTAA 2 cut(s) 135, 762
Tru9I TTAA 2 cut(s) 135, 762
TscAI CASTG 2 cut(s) 582, 810
TseFI GTSAC 2 cut(s) 328, 656
TseI GCWGC 4 cut(s) 16, 304, 437, 520
Tsp45I GTSAC 2 cut(s) 328, 656
TspDTI ATGAA 3 cut(s) 207, 359, 601
TspRI CASTG 2 cut(s) 582, 810
Van91I CCANNNNNTGG 1 cut(s) 679
VpaK11BI GGWCC 1 cut(s) 208
XagI CCTNNNNNAGG 1 cut(s) 56
XceI RCATGY 1 cut(s) 185
XspI CTAG 5 cut(s) 114, 165, 420, 506, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.