Rh3CG196600

Belongs to the cullin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000162
Physical Location & Seq
Forward (+)
17562406 .. 17562702
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG196600.1

Sequence Viewer

Length: 297 bp
ATGGAAGGAATGATCACCGATTTGACAGTGGGTAGAGAATCACTCACCAGGTTTGGAGAGTTCATCCTAGAAAAGAATCGAAATCCCGGGCTCAATTTGTCAGTCCAGGTTCTCACAACCGGTTACTGGCATGGCAAAGTTACAAATCGTCTGATCTCAACCTTCCTGAAGAGATGGTCAAGTGTGTTGAAGTTTTCAAGGATTTCTTTAATAGGGAATACCAGCGCAGAAAGCTGTCATGGATATACTCACTGGGTTGTTCCAACGTCGACGGCAAGTTTGATTAGAGAACCATAG

Protein Analysis

98

Amino Acids

11.04

Weight (kDa)

9.74

Isoelectric Point (pI)

26.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 126
AgeI ACCGGT 1 cut(s) 119
AgsI TTSAA 2 cut(s) 190, 198
AjnI CCWGG 2 cut(s) 47, 105
AluBI AGCT 1 cut(s) 234
AluI AGCT 1 cut(s) 234
Ama87I CYCGRG 1 cut(s) 86
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
AsiGI ACCGGT 1 cut(s) 119
AspLEI GCGC 1 cut(s) 227
AsuC2I CCSGG 2 cut(s) 87, 88
AsuHPI GGTGA 2 cut(s) 7, 37
AvaI CYCGRG 1 cut(s) 86
BanII GRGCYC 1 cut(s) 93
BccI CCATC 1 cut(s) 168
BceAI ACGGC 1 cut(s) 288
BciT130I CCWGG 2 cut(s) 49, 107
BclI TGATCA 1 cut(s) 12
BcnI CCSGG 2 cut(s) 87, 88
BfaI CTAG 1 cut(s) 68
Bme1390I CCNGG 4 cut(s) 49, 87, 88, 107
BmeT110I CYCGRG 1 cut(s) 86
BmrFI CCNGG 4 cut(s) 49, 87, 88, 107
BmrI ACTGGG 1 cut(s) 262
BmuI ACTGGG 1 cut(s) 262
BplI GAGNNNNNCTC 2 cut(s) 27, 59
BpuMI CCSGG 2 cut(s) 87, 88
BsaJI CCNNGG 1 cut(s) 86
BsaWI WCCGGW 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 2 cut(s) 131, 257
BseBI CCWGG 2 cut(s) 49, 107
BseDI CCNNGG 1 cut(s) 86
BseGI GGATG 1 cut(s) 63
BseLI CCNNNNNNNGG 1 cut(s) 126
BseNI ACTGG 2 cut(s) 131, 257
BshTI ACCGGT 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 2 cut(s) 87, 120
BslI CCNNNNNNNGG 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 2 cut(s) 12, 153
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 2 cut(s) 131, 257
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 2 cut(s) 12, 153
Bst2UI CCWGG 2 cut(s) 49, 107
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 164
BstF5I GGATG 1 cut(s) 63
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 2 cut(s) 15, 156
BstMBI GATC 2 cut(s) 12, 153
BstMWI GCNNNNNNNGC 1 cut(s) 231
BstNI CCWGG 2 cut(s) 49, 107
BstSCI CCNGG 4 cut(s) 47, 85, 86, 105
BtsCI GGATG 1 cut(s) 63
BtsIMutI CAGTG 2 cut(s) 33, 250
CfoI GCGC 1 cut(s) 227
Cfr10I RCCGGY 1 cut(s) 119
Cfr9I CCCGGG 1 cut(s) 86
CsiI ACCWGGT 1 cut(s) 47
CspAI ACCGGT 1 cut(s) 119
CviAII CATG 2 cut(s) 131, 239
CviJI RGCY 2 cut(s) 91, 234
CviKI_1 RGCY 2 cut(s) 91, 234
DpnI GATC 2 cut(s) 14, 155
DpnII GATC 2 cut(s) 12, 153
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 86
EcoRII CCWGG 2 cut(s) 47, 105
EcoT38I GRGCYC 1 cut(s) 93
FaeI CATG 2 cut(s) 134, 242
FaiI YATR 4 cut(s) 132, 240, 246, 295
FalI AAGNNNNNCTT 2 cut(s) 190, 222
FatI CATG 2 cut(s) 130, 238
FbaI TGATCA 1 cut(s) 12
FblI GTMKAC 1 cut(s) 269
FokI GGATG 1 cut(s) 50
FriOI GRGCYC 1 cut(s) 93
FspBI CTAG 1 cut(s) 68
GlaI GCGC 1 cut(s) 226
HapII CCGG 2 cut(s) 87, 120
HhaI GCGC 1 cut(s) 227
Hin1II CATG 2 cut(s) 134, 242
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HinfI GANTC 2 cut(s) 38, 76
HpaII CCGG 2 cut(s) 87, 120
HphI GGTGA 2 cut(s) 7, 37
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 1 cut(s) 270
Hpy99I CGWCG 2 cut(s) 271, 274
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 2 cut(s) 134, 242
HspAI GCGC 1 cut(s) 225
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 2 cut(s) 12, 153
MabI ACCWGGT 1 cut(s) 47
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 2 cut(s) 122, 139
MalI GATC 2 cut(s) 14, 155
MboI GATC 2 cut(s) 12, 153
MboII GAAGA 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 287
MseI TTAA 1 cut(s) 209
MspI CCGG 2 cut(s) 87, 120
MspR9I CCNGG 4 cut(s) 49, 87, 88, 107
MvaI CCWGG 2 cut(s) 49, 107
MwoI GCNNNNNNNGC 1 cut(s) 231
NciI CCSGG 2 cut(s) 87, 88
NdeII GATC 2 cut(s) 12, 153
NlaIII CATG 2 cut(s) 134, 242
PfeI GAWTC 2 cut(s) 38, 76
PinAI ACCGGT 1 cut(s) 119
Psp6I CCWGG 2 cut(s) 47, 105
PspGI CCWGG 2 cut(s) 47, 105
SalI GTCGAC 1 cut(s) 268
SaqAI TTAA 1 cut(s) 209
Sau3AI GATC 2 cut(s) 12, 153
ScrFI CCNGG 4 cut(s) 49, 87, 88, 107
SduI GDGCHC 1 cut(s) 93
SetI ASST 5 cut(s) 53, 111, 164, 236, 269
SexAI ACCWGGT 1 cut(s) 47
SgrDI CGTCGACG 1 cut(s) 268
SmaI CCCGGG 1 cut(s) 88
Sse9I AATT 1 cut(s) 94
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 4 cut(s) 47, 85, 86, 105
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 269
TaqI TCGA 2 cut(s) 79, 269
TasI AATT 1 cut(s) 94
TfiI GAWTC 2 cut(s) 38, 76
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 2 cut(s) 33, 257
TspDTI ATGAA 1 cut(s) 52
TspMI CCCGGG 1 cut(s) 86
TspRI CASTG 2 cut(s) 33, 257
XmaI CCCGGG 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 269
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.