pycom06g04420

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
5690258 .. 5690885
628 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g04420.2

Sequence Viewer

Length: 408 bp
ATGAGCGTGGTCTCAGGTAGTCAATTTCGGCCACTTATCGAGTTGGATCAAGGATGGGAATATATATCGAGTATGTTTGCAAAATTAAAGAGGATTTTAGAAGGATTACCGGAGCCTCCGTTCAATCCCGTTGAATATATGACCCTTTACACAACTGTGTACAATATGTGTACCCAAAAGCCGCCTCACAATTACTCTCAACAGCTTTACGATAGGTATAGGGCGGCGTTGGAGGACTACGTAACCACGACTGTGCTGCCATCTGTAAATGAGAAACACGGCGAGCTTATGCTGCAAGAGCTTGTGAAAAGATGGACGAACTATAAAATTATGATTCGGTGGCTGTCAAACTGTTTTAATTTTCTTGATCGGTTTTTCATCCCTAGGATCGATCCCTTCCTAGCCTGA

Protein Analysis

136

Amino Acids

16.09

Weight (kDa)

6.72

Isoelectric Point (pI)

54.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 182, 224
AclWI GGATC 3 cut(s) 54, 386, 395
AcoI YGGCCR 1 cut(s) 29
AfaI GTAC 2 cut(s) 161, 172
AgsI TTSAA 2 cut(s) 124, 134
AleI CACNNNNGTG 2 cut(s) 155, 251
AloI GAACNNNNNNTCC 2 cut(s) 104, 136
AluBI AGCT 3 cut(s) 205, 286, 301
AluI AGCT 3 cut(s) 205, 286, 301
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 3 cut(s) 54, 386, 395
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 2 cut(s) 256, 292
AspA2I CCTAGG 1 cut(s) 383
AvrII CCTAGG 1 cut(s) 383
BbvI GCAGC 2 cut(s) 243, 279
BccI CCATC 3 cut(s) 48, 268, 306
BceAI ACGGC 1 cut(s) 295
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 2 cut(s) 384, 401
BisI GCNGC 4 cut(s) 182, 225, 257, 293
BlnI CCTAGG 1 cut(s) 383
BlsI GCNGC 4 cut(s) 183, 226, 258, 294
BmiI GGNNCC 1 cut(s) 114
Bsa29I ATCGAT 1 cut(s) 390
BsaAI YACGTR 1 cut(s) 241
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 383
BsaWI WCCGGW 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
BseCI ATCGAT 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 383
BseGI GGATG 2 cut(s) 59, 378
BseMII CTCAG 1 cut(s) 27
BseXI GCAGC 2 cut(s) 243, 279
BshFI GGCC 1 cut(s) 31
BshVI ATCGAT 1 cut(s) 390
BsiSI CCGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 16
BsnI GGCC 1 cut(s) 31
Bso31I GGTCTC 1 cut(s) 16
Bsp1407I TGTACA 1 cut(s) 159
Bsp143I GATC 4 cut(s) 46, 367, 387, 391
BspACI CCGC 2 cut(s) 182, 224
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 26
BspDI ATCGAT 1 cut(s) 390
BspLI GGNNCC 1 cut(s) 114
BspPI GGATC 3 cut(s) 54, 386, 395
BspTNI GGTCTC 1 cut(s) 16
BsrGI TGTACA 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 4 cut(s) 46, 367, 387, 391
BssT1I CCWWGG 1 cut(s) 383
Bst4CI ACNGT 3 cut(s) 157, 253, 353
BstAUI TGTACA 1 cut(s) 159
BstBAI YACGTR 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 1 cut(s) 13
BstF5I GGATG 2 cut(s) 59, 378
BstKTI GATC 4 cut(s) 49, 370, 390, 394
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 4 cut(s) 46, 367, 387, 391
BstMWI GCNNNNNNNGC 2 cut(s) 292, 298
BstSNI TACGTA 1 cut(s) 241
BstV1I GCAGC 2 cut(s) 243, 279
Bsu15I ATCGAT 1 cut(s) 390
BsuRI GGCC 1 cut(s) 31
BsuTUI ATCGAT 1 cut(s) 390
BtsCI GGATG 2 cut(s) 59, 378
Cac8I GCNNGC 1 cut(s) 284
ClaI ATCGAT 1 cut(s) 390
Csp6I GTAC 2 cut(s) 160, 171
CviJI RGCY 8 cut(s) 31, 115, 181, 205, 286, 301, 343, 404
CviKI_1 RGCY 8 cut(s) 31, 115, 181, 205, 286, 301, 343, 404
CviQI GTAC 2 cut(s) 160, 171
DdeI CTNAG 1 cut(s) 13
DpnI GATC 4 cut(s) 48, 369, 389, 393
DpnII GATC 4 cut(s) 46, 367, 387, 391
EaeI YGGCCR 1 cut(s) 29
Eco105I TACGTA 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 383
Eco31I GGTCTC 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 383
ErhI CCWWGG 1 cut(s) 383
Fnu4HI GCNGC 4 cut(s) 182, 225, 257, 293
FokI GGATG 2 cut(s) 66, 365
Fsp4HI GCNGC 4 cut(s) 182, 225, 257, 293
FspBI CTAG 2 cut(s) 384, 401
GluI GCNGC 4 cut(s) 182, 225, 257, 293
HaeIII GGCC 1 cut(s) 31
HapII CCGG 1 cut(s) 110
HinfI GANTC 1 cut(s) 334
HpaII CCGG 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 160, 171
Hpy188III TCNNGA 1 cut(s) 365
Hpy8I GTNNAC 2 cut(s) 160, 171
HpyAV CCTTC 2 cut(s) 95, 406
HpyCH4III ACNGT 3 cut(s) 157, 253, 353
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 80, 295
HpyF10VI GCNNNNNNNGC 2 cut(s) 292, 298
HpyF3I CTNAG 1 cut(s) 13
HpySE526I ACGT 1 cut(s) 240
Kzo9I GATC 4 cut(s) 46, 367, 387, 391
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 1 cut(s) 123
Lsp1109I GCAGC 2 cut(s) 243, 279
MaeI CTAG 2 cut(s) 384, 401
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 241
MalI GATC 4 cut(s) 48, 369, 389, 393
MboI GATC 4 cut(s) 46, 367, 387, 391
MluCI AATT 5 cut(s) 23, 83, 190, 327, 358
MmeI TCCRAC 2 cut(s) 24, 210
MnlI CCTC 4 cut(s) 84, 126, 195, 226
MseI TTAA 2 cut(s) 86, 357
MslI CAYNNNNRTG 2 cut(s) 155, 251
MspI CCGG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 292, 298
NdeII GATC 4 cut(s) 46, 367, 387, 391
NlaIV GGNNCC 1 cut(s) 114
OliI CACNNNNGTG 2 cut(s) 155, 251
PfeI GAWTC 1 cut(s) 334
PkrI GCNGC 4 cut(s) 183, 226, 258, 294
Ppu21I YACGTR 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 114
RsaI GTAC 2 cut(s) 161, 172
RsaNI GTAC 2 cut(s) 160, 171
RseI CAYNNNNRTG 2 cut(s) 155, 251
SaqAI TTAA 2 cut(s) 86, 357
SatI GCNGC 4 cut(s) 182, 225, 257, 293
Sau3AI GATC 4 cut(s) 46, 367, 387, 391
SetI ASST 6 cut(s) 19, 207, 218, 243, 288, 303
SmiMI CAYNNNNRTG 2 cut(s) 155, 251
SnaBI TACGTA 1 cut(s) 241
Sse9I AATT 5 cut(s) 23, 83, 190, 327, 358
SsiI CCGC 2 cut(s) 182, 224
SspMI CTAG 2 cut(s) 384, 401
StyI CCWWGG 1 cut(s) 383
TaaI ACNGT 3 cut(s) 157, 253, 353
TaiI ACGT 1 cut(s) 243
TaqI TCGA 3 cut(s) 39, 68, 390
TasI AATT 5 cut(s) 23, 83, 190, 327, 358
TatI WGTACW 1 cut(s) 159
TauI GCSGC 2 cut(s) 184, 227
TfiI GAWTC 1 cut(s) 334
Tru1I TTAA 2 cut(s) 86, 357
Tru9I TTAA 2 cut(s) 86, 357
TseI GCWGC 2 cut(s) 256, 292
TspDTI ATGAA 1 cut(s) 367
TspGWI ACGGA 1 cut(s) 108
XmaJI CCTAGG 1 cut(s) 383
XspI CTAG 2 cut(s) 384, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.