Rroxscaffold_1G00040730

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
58504383 .. 58507038
2656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00040730.1

Sequence Viewer

Length: 2223 bp
ATGGGAGCCAAAGTCATCCAATTCGATCAAGGATGGAGCAGTTTGCAGAAGGGGATCACGAAGCTGAAGAAGATTCTAGAGGGAGCTCCGGGTGGTCATTTCAGTTCAGAGGAGTACATGGCTCTCTACTCAACCATCTACAACATGTGCAGTCAAAATTCCCCAAATTATTCTCAGCAGTTGTATGAGAAATACGGCGAGTCGTTGACGGAGTACATCAGAGCGACGGTGCTGCCCTCCATCGCCGAGAACCACGGTGAGTTTATGCTGCGGGAGTTCGTGAATAGATGGGCCAATCACAAGGTCATGGTCAGGTGGCTCTCTCATTTCTTTAGTTATCTTGATCGCTGGTTCGTTTCGCAGAAAAGTTTGCCTAGATTGAAGGAAGCCGGGCTTGTTGTTTTTCGGGAGTGTGTTTATGAGAAGGTAAAGAGTAATGTCGTGGCTTGTGTGATTGGTTTTATTGATAAGGAGCGGGAAGGGGGTCAGATTGATAGGGGTTTGTTGAAGAATGTGGTGGATGTGTTTGTGGAAGTTGGGATGGGGCAAATGGGTGGTTATGAAGTGGACTTTGAGGCGGAGATGCTTGCGGATAGTGGTAAGCATTATTCGCGCAAAGCGGTGAGTTGGATTTTGGAGGATTCTTGCCCGGATTACATGGTGAAGGCAGAGGAATGCTTGAGGAGGGAGAAGGAGAGGGCTTCTCAGTACTTGCATTCGAGCAGTGAGCAGAAGCTGGTGGAGAAAGTGCAGCATGAGCTGTTGGTGGTTCATGCACACCAGCTAATCGATAAAGAGCATTCTGGATTTCGTGCTTTGATTCGTGGTGATAAGGTGGAGGATTTGTCTAGGATGTTCAGGCTGTACCATAAGATACCTAAAGGCTTGGAGCCTGTTGCTAGTCTGTTTAAACAACACGTTACTGATGAAGGTAAGGCCCTGGTTCAGCAGGCCGAAGATGCTGCAAGTAGCAAGCAGGTTTCTAACGGAGCTGGGGCAGAAGTGGGACTGGTCCTTATCAGGAAAATTTTGGAGCTCCATGATAAGTATATGGCGTATGTCACTGGTTGCTTTATGAACCACTCGGTCTTTCACAAGGCTTTGAAAGAGGCTTTTGAGGTGTTTTGCAATAAATCTGTTGCTGGGATTTCGAGTGTCGAATTACTGGCTGGATTCTGTGATAATTTACTCAAGAAGGGGACTAGTGAAAAGTTGAGTGATGAGATCATTGAGGAAACTCTTGAGAAGGTTGTTGTGCTGCTTGCTTATTATAGTGACAAAGACCTTTATGCAGAATTCTGTAGGAAAAAGCTTGCCCGTCGGCTGCTATTTGATCGGAGTTGCAACGAAGACCATGAGAAAAGTTTTCTAACCAAGCTGAAACAGCAATGTGGTGGACAGTTTGCCTCAAAGATGCAGGGAATGGTCACAGATATGACACTGGCAAAGGATATTCAGACCAATTTCGAACAATATCTTGGAACCAATCCAAATGTTAAACCTGGGATCGACTTATCAGTCACTGTTCTTAAAACTGGTTGCTGGCCAAGTTACAAATCATCTGATCTTAACCTTCCCCAAGAGATGATCAAGTGCGTTGAAGTGTTCAAAGGATTCTATGATTCACAAACGAAACGCAGAAAATTGGCATGGATTTACTCATTGGGAACTTGCAACCTAGTTGGCAAGTTTGAACCAAAACCCATTGAATTGGTTGTATCAACCTATCAAGCTGCTCTCCTGCTGCTATTCAATGATTCAGATAGATTAAGCTTTTCAGAAATATTGACTCAGCTAAAGCTTACCAATGAGGACTTGGTTAGATTGCTTAGTTCACTGTCGTGTGCCAAGTATAAGATCCTCATTAAGGAGCCAAATACGAAGACTGTTAAACCAGATGACAACTTTGTGTTCAACTCTATGTTTACTGACAAAATGAGGAAAATTAGGATTCCTCTCCCGCCAATGGTTGATGAAAAGAAAAAGGTGACTGAAGATGTTGACAAAGAGCGGAAGTATGCTATTGATGCTGCACTTGTTAGGATTATGAAGAGTAGGAAAGTTTTGGGTCATCAAAAATTAGTCATGGAATGTGTTGAGATGGTGCAGAGCATCTTCAAGCCAGACATCAAAACAATTAAGAAGCGCATTGAAGATCTCATTACCCGTGATTACCTGGAGAGGGACCATGAAGACTCTAATATGTTCAAGTATGTTGCCTAA

Protein Analysis

740

Amino Acids

84.76

Weight (kDa)

8.35

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cullin PF00888 12 - 485 3.5e-124 Cullin alpha solenoid domain
Cullin_AB PF26557 509 - 642 2.9e-41 Cullin alpha+beta domain
Cullin_Nedd8 PF10557 670 - 732 3.5e-25 Cullin protein neddylation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1517
Acc36I ACCTGC 1 cut(s) 967
AccBSI CCGCTC 2 cut(s) 475, 2011
AccII CGCG 1 cut(s) 613
AciI CCGC 7 cut(s) 271, 475, 578, 590, 620, 1961, 2011
AclWI GGATC 3 cut(s) 62, 1514, 1852
AcoI YGGCCR 1 cut(s) 1544
AcsI RAATTY 3 cut(s) 157, 1026, 1295
AcuI CTGAAG 2 cut(s) 86, 2013
AfaI GTAC 4 cut(s) 116, 215, 710, 866
AfiI CCNNNNNNNGG 3 cut(s) 1867, 1966, 2182
AflIII ACRYGT 2 cut(s) 144, 916
AhlI ACTAGT 1 cut(s) 1202
AjnI CCWGG 3 cut(s) 939, 1501, 2175
AjuI GAANNNNNNNTTGG 2 cut(s) 1461, 1493
AleI CACNNNNGTG 1 cut(s) 1840
Alw21I GWGCWC 2 cut(s) 88, 1038
AlwI GGATC 3 cut(s) 62, 1514, 1852
AlwNI CAGNNNCTG 2 cut(s) 736, 1523
AoxI GGCC 4 cut(s) 291, 936, 951, 1544
ApeKI GCWGC 9 cut(s) 232, 268, 751, 962, 1258, 1324, 1733, 1744, 2030
ApoI RAATTY 3 cut(s) 157, 1026, 1295
AspLEI GCGC 2 cut(s) 615, 2148
AspS9I GGNCC 4 cut(s) 291, 937, 1012, 2185
AsuC2I CCSGG 3 cut(s) 90, 391, 650
AsuHPI GGTGA 5 cut(s) 269, 634, 673, 839, 1999
AsuII TTCGAA 1 cut(s) 1467
AvaII GGWCC 2 cut(s) 1012, 2185
BalI TGGCCA 1 cut(s) 1546
BanII GRGCYC 2 cut(s) 88, 1038
BbsI GAAGAC 3 cut(s) 1356, 1889, 2199
Bbv12I GWGCWC 2 cut(s) 88, 1038
BbvI GCAGC 9 cut(s) 219, 255, 763, 949, 1245, 1311, 1720, 1731, 2017
BccI CCATC 6 cut(s) 27, 143, 248, 282, 535, 2095
BceAI ACGGC 1 cut(s) 211
BcgI CGANNNNNNTGC 4 cut(s) 214, 248, 944, 978
BciT130I CCWGG 3 cut(s) 941, 1503, 2177
BclI TGATCA 1 cut(s) 1587
BcnI CCSGG 3 cut(s) 90, 391, 650
BcuI ACTAGT 1 cut(s) 1202
BfaI CTAG 6 cut(s) 77, 375, 849, 900, 1203, 1679
BfmI CTRYAG 1 cut(s) 1300
BfuAI ACCTGC 1 cut(s) 967
BglII AGATCT 1 cut(s) 2155
BisI GCNGC 9 cut(s) 233, 269, 752, 963, 1259, 1325, 1734, 1745, 2031
BlsI GCNGC 9 cut(s) 234, 270, 753, 964, 1260, 1326, 1735, 1746, 2032
BmcAI AGTACT 1 cut(s) 710
Bme1390I CCNGG 6 cut(s) 90, 391, 650, 941, 1503, 2177
Bme18I GGWCC 2 cut(s) 1012, 2185
BmgT120I GGNCC 4 cut(s) 291, 937, 1012, 2185
BmiI GGNNCC 5 cut(s) 7, 891, 1483, 1872, 2186
BmrFI CCNGG 6 cut(s) 90, 391, 650, 941, 1503, 2177
BmsI GCATC 5 cut(s) 573, 949, 1404, 2017, 2121
BpiI GAAGAC 3 cut(s) 1356, 1889, 2199
BplI GAGNNNNNCTC 2 cut(s) 688, 720
BpmI CTGGAG 1 cut(s) 2198
Bpu14I TTCGAA 1 cut(s) 1467
BpuEI CTTGAG 3 cut(s) 700, 1175, 1262
BpuMI CCSGG 3 cut(s) 90, 391, 650
Bsa29I ATCGAT 1 cut(s) 789
BsaJI CCNNGG 3 cut(s) 253, 939, 1502
BsaXI ACNNNNNCTCC 3 cut(s) 27, 830, 860
Bsc4I CCNNNNNNNGG 3 cut(s) 1867, 1966, 2182
Bse1I ACTGG 5 cut(s) 1014, 1069, 1170, 1446, 1540
Bse3DI GCAATG 1 cut(s) 1394
BseBI CCWGG 3 cut(s) 941, 1503, 2177
BseCI ATCGAT 1 cut(s) 789
BseDI CCNNGG 3 cut(s) 253, 939, 1502
BseGI GGATG 5 cut(s) 15, 38, 526, 546, 858
BseLI CCNNNNNNNGG 3 cut(s) 1867, 1966, 2182
BseMI GCAATG 1 cut(s) 1394
BseMII CTCAG 3 cut(s) 188, 719, 1805
BseNI ACTGG 5 cut(s) 1014, 1069, 1170, 1446, 1540
BseRI GAGGAG 2 cut(s) 125, 697
BseXI GCAGC 9 cut(s) 219, 255, 763, 949, 1245, 1311, 1720, 1731, 2017
BseYI CCCAGC 2 cut(s) 992, 1142
BsgI GTGCAG 4 cut(s) 169, 770, 2016, 2126
Bsh1236I CGCG 1 cut(s) 613
BshFI GGCC 4 cut(s) 293, 938, 953, 1546
BshVI ATCGAT 1 cut(s) 789
BsiHKAI GWGCWC 2 cut(s) 88, 1038
BsiSI CCGG 3 cut(s) 89, 390, 650
BslFI GGGAC 3 cut(s) 1020, 1213, 2198
BslI CCNNNNNNNGG 3 cut(s) 1867, 1966, 2182
BsmFI GGGAC 3 cut(s) 1020, 1213, 2198
BsmI GAATGC 3 cut(s) 680, 715, 799
BsnI GGCC 4 cut(s) 293, 938, 953, 1546
Bsp119I TTCGAA 1 cut(s) 1467
Bsp1286I GDGCHC 2 cut(s) 88, 1038
BspACI CCGC 7 cut(s) 271, 475, 578, 590, 620, 1961, 2011
BspANI GGCC 4 cut(s) 293, 938, 953, 1546
BspCNI CTCAG 3 cut(s) 187, 718, 1804
BspDI ATCGAT 1 cut(s) 789
BspFNI CGCG 1 cut(s) 613
BspLI GGNNCC 5 cut(s) 7, 891, 1483, 1872, 2186
BspMI ACCTGC 1 cut(s) 967
BspPI GGATC 3 cut(s) 62, 1514, 1852
BspT104I TTCGAA 1 cut(s) 1467
BsrBI CCGCTC 2 cut(s) 475, 2011
BsrDI GCAATG 1 cut(s) 1394
BsrI ACTGG 5 cut(s) 1014, 1069, 1170, 1446, 1540
BssECI CCNNGG 3 cut(s) 253, 939, 1502
Bst2UI CCWGG 3 cut(s) 941, 1503, 2177
Bst4CI ACNGT 6 cut(s) 229, 257, 1401, 1525, 1839, 1888
Bst6I CTCTTC 1 cut(s) 2045
BstBI TTCGAA 1 cut(s) 1467
BstC8I GCNNGC 6 cut(s) 588, 951, 974, 1263, 1314, 1544
BstDEI CTNAG 4 cut(s) 174, 705, 1791, 1829
BstDSI CCRYGG 1 cut(s) 253
BstENI CCTNNNNNAGG 1 cut(s) 1865
BstF5I GGATG 5 cut(s) 15, 38, 526, 546, 858
BstFNI CGCG 1 cut(s) 613
BstHHI GCGC 2 cut(s) 615, 2148
BstMWI GCNNNNNNNGC 5 cut(s) 610, 757, 959, 1384, 2027
BstNI CCWGG 3 cut(s) 941, 1503, 2177
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 6 cut(s) 88, 389, 648, 939, 1501, 2175
BstSFI CTRYAG 1 cut(s) 1300
BstUI CGCG 1 cut(s) 613
BstV1I GCAGC 9 cut(s) 219, 255, 763, 949, 1245, 1311, 1720, 1731, 2017
BstV2I GAAGAC 3 cut(s) 1356, 1889, 2199
BstX2I RGATCY 2 cut(s) 1857, 2155
BstXI CCANNNNNNTGG 1 cut(s) 1711
BstYI RGATCY 2 cut(s) 1857, 2155
Bsu15I ATCGAT 1 cut(s) 789
BsuRI GGCC 4 cut(s) 293, 938, 953, 1546
BsuTUI ATCGAT 1 cut(s) 789
BtgI CCRYGG 1 cut(s) 253
BtgZI GCGATG 1 cut(s) 226
BtsCI GGATG 5 cut(s) 15, 38, 526, 546, 858
BtsI GCAGTG 1 cut(s) 730
BtsIMutI CAGTG 5 cut(s) 730, 1062, 1439, 1521, 1835
BveI ACCTGC 1 cut(s) 967
Cac8I GCNNGC 6 cut(s) 588, 951, 974, 1263, 1314, 1544
CaiI CAGNNNCTG 2 cut(s) 736, 1523
CfoI GCGC 2 cut(s) 615, 2148
Cfr13I GGNCC 4 cut(s) 291, 937, 1012, 2185
ClaI ATCGAT 1 cut(s) 789
Csp6I GTAC 4 cut(s) 115, 214, 709, 865
CviQI GTAC 4 cut(s) 115, 214, 709, 865
DdeI CTNAG 4 cut(s) 174, 705, 1791, 1829
DraI TTTAAA 1 cut(s) 910
DrdI GACNNNNNNGTC 1 cut(s) 1517
DseDI GACNNNNNNGTC 1 cut(s) 1517
EaeI YGGCCR 1 cut(s) 1544
Eam1104I CTCTTC 1 cut(s) 2045
EarI CTCTTC 1 cut(s) 2045
EciI GGCGGA 1 cut(s) 593
Ecl136II GAGCTC 2 cut(s) 86, 1036
Eco24I GRGCYC 2 cut(s) 88, 1038
Eco47I GGWCC 2 cut(s) 1012, 2185
Eco53kI GAGCTC 2 cut(s) 86, 1036
Eco57I CTGAAG 2 cut(s) 86, 2013
EcoICRI GAGCTC 2 cut(s) 86, 1036
EcoNI CCTNNNNNAGG 1 cut(s) 1865
EcoO109I RGGNCCY 1 cut(s) 937
EcoRI GAATTC 1 cut(s) 1295
EcoRII CCWGG 3 cut(s) 939, 1501, 2175
EcoT38I GRGCYC 2 cut(s) 88, 1038
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FaqI GGGAC 3 cut(s) 1020, 1213, 2198
FauI CCCGC 3 cut(s) 264, 468, 1968
FbaI TGATCA 1 cut(s) 1587
Fnu4HI GCNGC 9 cut(s) 233, 269, 752, 963, 1259, 1325, 1734, 1745, 2031
FokI GGATG 5 cut(s) 2, 45, 533, 553, 865
FriOI GRGCYC 2 cut(s) 88, 1038
Fsp4HI GCNGC 9 cut(s) 233, 269, 752, 963, 1259, 1325, 1734, 1745, 2031
FspBI CTAG 6 cut(s) 77, 375, 849, 900, 1203, 1679
GlaI GCGC 2 cut(s) 614, 2147
GluI GCNGC 9 cut(s) 233, 269, 752, 963, 1259, 1325, 1734, 1745, 2031
GsaI CCCAGC 2 cut(s) 996, 1146
GsuI CTGGAG 1 cut(s) 2198
HaeIII GGCC 4 cut(s) 293, 938, 953, 1546
HapII CCGG 3 cut(s) 89, 390, 650
HhaI GCGC 2 cut(s) 615, 2148
Hin6I GCGC 2 cut(s) 613, 2146
HinP1I GCGC 2 cut(s) 613, 2146
HincII GTYRAC 2 cut(s) 207, 2002
HindII GTYRAC 2 cut(s) 207, 2002
HindIII AAGCTT 3 cut(s) 1310, 1771, 1799
HpaII CCGG 3 cut(s) 89, 390, 650
HphI GGTGA 5 cut(s) 269, 634, 673, 839, 1999
Hpy166II GTNNAC 6 cut(s) 207, 568, 1397, 1835, 1926, 2002
Hpy188I TCNGA 8 cut(s) 109, 221, 489, 1338, 1458, 1564, 1762, 1780
Hpy188III TCNNGA 9 cut(s) 58, 77, 280, 341, 407, 804, 1021, 1192, 1241
Hpy8I GTNNAC 6 cut(s) 207, 568, 1397, 1835, 1926, 2002
Hpy99I CGWCG 2 cut(s) 229, 1323
HpyCH4III ACNGT 6 cut(s) 229, 257, 1401, 1525, 1839, 1888
HpyCH4IV ACGT 1 cut(s) 918
HpyF10VI GCNNNNNNNGC 5 cut(s) 610, 757, 959, 1384, 2027
HpyF3I CTNAG 4 cut(s) 174, 705, 1791, 1829
HpySE526I ACGT 1 cut(s) 918
HspAI GCGC 2 cut(s) 613, 2146
Ksp22I TGATCA 1 cut(s) 1587
Lsp1109I GCAGC 9 cut(s) 219, 255, 763, 949, 1245, 1311, 1720, 1731, 2017
LweI GCATC 5 cut(s) 573, 949, 1404, 2017, 2121
MaeI CTAG 6 cut(s) 77, 375, 849, 900, 1203, 1679
MaeII ACGT 1 cut(s) 918
MaeIII GTNAC 7 cut(s) 919, 1060, 1274, 1426, 1519, 1550, 1987
MbiI CCGCTC 2 cut(s) 475, 2011
MflI RGATCY 2 cut(s) 1857, 2155
MhlI GDGCHC 2 cut(s) 88, 1038
MlsI TGGCCA 1 cut(s) 1546
MluNI TGGCCA 1 cut(s) 1546
MlyI GAGTC 3 cut(s) 209, 1783, 2189
MmeI TCCRAC 1 cut(s) 608
Mox20I TGGCCA 1 cut(s) 1546
MscI TGGCCA 1 cut(s) 1546
MseI TTAA 8 cut(s) 909, 1497, 1530, 1569, 1769, 1866, 1890, 2139
MslI CAYNNNNRTG 2 cut(s) 1433, 1840
Msp20I TGGCCA 1 cut(s) 1546
MspI CCGG 3 cut(s) 89, 390, 650
MspR9I CCNGG 6 cut(s) 90, 391, 650, 941, 1503, 2177
MssI GTTTAAAC 1 cut(s) 910
Mva1269I GAATGC 3 cut(s) 680, 715, 799
MvaI CCWGG 3 cut(s) 941, 1503, 2177
MvnI CGCG 1 cut(s) 613
MwoI GCNNNNNNNGC 5 cut(s) 610, 757, 959, 1384, 2027
NciI CCSGG 3 cut(s) 90, 391, 650
NlaIV GGNNCC 5 cut(s) 7, 891, 1483, 1872, 2186
NmeAIII GCCGAG 1 cut(s) 271
NmuCI GTSAC 5 cut(s) 1060, 1274, 1426, 1519, 1987
NspI RCATGY 1 cut(s) 148
NspV TTCGAA 1 cut(s) 1467
OliI CACNNNNGTG 1 cut(s) 1840
PciI ACATGT 1 cut(s) 144
PctI GAATGC 3 cut(s) 680, 715, 799
PfeI GAWTC 8 cut(s) 73, 641, 820, 1173, 1614, 1622, 1757, 1951
PkrI GCNGC 9 cut(s) 234, 270, 753, 964, 1260, 1326, 1735, 1746, 2032
PleI GAGTC 3 cut(s) 208, 1783, 2189
PmeI GTTTAAAC 1 cut(s) 910
PpsI GAGTC 3 cut(s) 208, 1783, 2189
PscI ACATGT 1 cut(s) 144
Psp124BI GAGCTC 2 cut(s) 88, 1038
Psp6I CCWGG 3 cut(s) 939, 1501, 2175
PspFI CCCAGC 2 cut(s) 992, 1142
PspGI CCWGG 3 cut(s) 939, 1501, 2175
PspN4I GGNNCC 5 cut(s) 7, 891, 1483, 1872, 2186
PspPI GGNCC 4 cut(s) 291, 937, 1012, 2185
PstNI CAGNNNCTG 2 cut(s) 736, 1523
PsuI RGATCY 2 cut(s) 1857, 2155
RsaI GTAC 4 cut(s) 116, 215, 710, 866
RsaNI GTAC 4 cut(s) 115, 214, 709, 865
RseI CAYNNNNRTG 2 cut(s) 1433, 1840
SacI GAGCTC 2 cut(s) 88, 1038
SaqAI TTAA 8 cut(s) 909, 1497, 1530, 1569, 1769, 1866, 1890, 2139
SatI GCNGC 9 cut(s) 233, 269, 752, 963, 1259, 1325, 1734, 1745, 2031
Sau96I GGNCC 4 cut(s) 291, 937, 1012, 2185
ScaI AGTACT 1 cut(s) 710
SchI GAGTC 3 cut(s) 209, 1783, 2189
ScrFI CCNGG 6 cut(s) 90, 391, 650, 941, 1503, 2177
SduI GDGCHC 2 cut(s) 88, 1038
SfaNI GCATC 5 cut(s) 573, 949, 1404, 2017, 2121
SfcI CTRYAG 1 cut(s) 1300
SfuI TTCGAA 1 cut(s) 1467
SinI GGWCC 2 cut(s) 1012, 2185
SmiMI CAYNNNNRTG 2 cut(s) 1433, 1840
SmlI CTYRAG 3 cut(s) 679, 1190, 1241
SmoI CTYRAG 3 cut(s) 679, 1190, 1241
SpeI ACTAGT 1 cut(s) 1202
SsiI CCGC 7 cut(s) 271, 475, 578, 590, 620, 1961, 2011
SspI AATATT 1 cut(s) 1785
SspMI CTAG 6 cut(s) 77, 375, 849, 900, 1203, 1679
SstI GAGCTC 2 cut(s) 88, 1038
StyD4I CCNGG 6 cut(s) 88, 389, 648, 939, 1501, 2175
TaaI ACNGT 6 cut(s) 229, 257, 1401, 1525, 1839, 1888
TaiI ACGT 1 cut(s) 921
TaqI TCGA 7 cut(s) 24, 719, 789, 1151, 1158, 1467, 1509
TaqII GACCGA 1 cut(s) 1075
TatI WGTACW 3 cut(s) 114, 213, 708
TfiI GAWTC 8 cut(s) 73, 641, 820, 1173, 1614, 1622, 1757, 1951
Tru1I TTAA 8 cut(s) 909, 1497, 1530, 1569, 1769, 1866, 1890, 2139
Tru9I TTAA 8 cut(s) 909, 1497, 1530, 1569, 1769, 1866, 1890, 2139
TscAI CASTG 5 cut(s) 730, 1069, 1446, 1528, 1842
TseFI GTSAC 5 cut(s) 1060, 1274, 1426, 1519, 1987
TseI GCWGC 9 cut(s) 232, 268, 751, 962, 1258, 1324, 1733, 1744, 2030
Tsp45I GTSAC 5 cut(s) 1060, 1274, 1426, 1519, 1987
TspDTI ATGAA 7 cut(s) 576, 761, 942, 1091, 1989, 2063, 2205
TspGWI ACGGA 2 cut(s) 224, 1002
TspRI CASTG 5 cut(s) 730, 1069, 1446, 1528, 1842
VpaK11BI GGWCC 2 cut(s) 1012, 2185
XagI CCTNNNNNAGG 1 cut(s) 1865
XapI RAATTY 3 cut(s) 157, 1026, 1295
XbaI TCTAGA 1 cut(s) 76
XceI RCATGY 1 cut(s) 148
XcmI CCANNNNNNNNNTGG 1 cut(s) 1813
XspI CTAG 6 cut(s) 77, 375, 849, 900, 1203, 1679
ZrmI AGTACT 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.