Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000162

Physical Location & Seq

Genomic Coordinates Forward (+)

7730920 .. 7731816

Gene Structure 897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1059400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAACAGGATTATACAAGGATCATCAGAACCTCAGTTCACCTCAGAAGAATATATGAGCCTTTACACAACTCTCTATAACATGTCTATTCAACAACCTCCTCATAATTATTCTCAGCAGCTCTATGAAAAGTATCAGGAGACAATTGAGGAATACATTTCTTCAACAGTGCTGCCGCCCCTAATGGAGAAGCAGGATGAGTTTATGTTGCAGGAGTACGTCAAAAATTGGGTAAATTATAAAGTTATGTTTAGGTGGCTCTCACACTTCTTTTGTTTTTTTTATGACCGTGGCATCACTCGGAATCAGACATCACTTCCTGGGCCGAATGAAGTTGTACTTAACTGCTTCTGTAATTTGGTTTATCTGAAGGTAAATGCTAATGTGAGATATTATGTACTTGGACTTATGCATAAAGAACGTGAGGGAGAGAAAATTGACAGAGCACTACTAAAGAATGTGATAAATATATATGTTGAAATTGAAATGGGAGAATTGGATGCGTATGAAAAGGACTTCGAAGAATACATGCTCATTGATACTCGCAAGTACTATTTGCATAAAGCATCAAGTTGGATTTTGGAGTACTCGTACACGGATTACATGTTGAAGGTAGAGGCATGCTTGAGAAGGGAGAGGGATAGAGTTTCTTGTTACCTGCTTCCGAGCAGTCAGAAGAAGCTAATGGAGACAGTGAAACATTGCTTGGTGGTTGTTCATGGAAGTCAATTGATTCAGAAGAAGCATTCTGTATCTGGATGTACTTTGCTCACGGTTGAAAATCTGGAGGAGCTTTCTAGGAAATTTATTGCTAATTTGGCATTGGAACAGCGAGTCTCTGCTAAAGGTTCACCATTTATTCGACAGGCAGAAGATGTAGCAATGATTGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000228 GO:0000793 GO:0000794 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009524 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010154 GO:0015630 GO:0019899 GO:0022414 GO:0023052 GO:0031461 GO:0031625 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0099402 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Cullin Cullin_Nedd8

Protein Analysis

299

Amino Acids

35.32

Weight (kDa)

5.75

Isoelectric Point (pI)

59.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin	PF00888	12 - 267	1.5e-44	Cullin alpha solenoid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca	FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica	MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica	Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis	pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis	RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata	RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora	Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa	Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha	Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana	Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
Acc36I	ACCTGC	1 cut(s)	666
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	803
AcuI	CTGAAG	1 cut(s)	389
AfaI	GTAC	7 cut(s)	218, 339, 399, 551, 587, 593, 763
AflIII	ACRYGT	2 cut(s)	81, 603
AgsI	TTSAA	6 cut(s)	92, 165, 479, 485, 610, 779
AjnI	CCWGG	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	689, 721
AluBI	AGCT	3 cut(s)	121, 682, 793
AluI	AGCT	3 cut(s)	121, 682, 793
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	3 cut(s)	134, 683, 841
AlwI	GGATC	1 cut(s)	28
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	2 cut(s)	118, 172
ApoI	RAATTY	1 cut(s)	803
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	2 cut(s)	31, 843
AsuII	TTCGAA	1 cut(s)	519
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	2 cut(s)	130, 159
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	3 cut(s)	134, 683, 841
BfaI	CTAG	1 cut(s)	798
BfuAI	ACCTGC	1 cut(s)	666
BisI	GCNGC	3 cut(s)	119, 173, 176
BlsI	GCNGC	3 cut(s)	120, 174, 177
BmcAI	AGTACT	2 cut(s)	551, 587
Bme1390I	CCNGG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	3 cut(s)	303, 490, 575
BpmI	CTGGAG	1 cut(s)	806
Bpu14I	TTCGAA	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	646
BsaJI	CCNNGG	2 cut(s)	289, 320
BsaXI	ACNNNNNCTCC	2 cut(s)	575, 605
Bse3DI	GCAATG	2 cut(s)	700, 888
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	289, 320
BseGI	GGATG	3 cut(s)	202, 505, 764
BseMI	GCAATG	2 cut(s)	700, 888
BseMII	CTCAG	3 cut(s)	47, 57, 128
BseRI	GAGGAG	2 cut(s)	90, 803
BseXI	GCAGC	2 cut(s)	130, 159
BshFI	GGCC	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	448
BsmAI	GTCTC	3 cut(s)	134, 683, 841
BsmI	GAATGC	1 cut(s)	745
BsnI	GGCC	1 cut(s)	325
Bsp119I	TTCGAA	1 cut(s)	519
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp143I	GATC	1 cut(s)	20
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	3 cut(s)	46, 56, 127
BspMI	ACCTGC	1 cut(s)	666
BspPI	GGATC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	519
BsrDI	GCAATG	2 cut(s)	700, 888
BssECI	CCNNGG	2 cut(s)	289, 320
BssMI	GATC	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	4 cut(s)	169, 290, 694, 775
BstBI	TTCGAA	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	622
BstDEI	CTNAG	3 cut(s)	33, 43, 114
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	3 cut(s)	202, 505, 764
BstKTI	GATC	1 cut(s)	23
BstMAI	GTCTC	3 cut(s)	134, 683, 841
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	1 cut(s)	818
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	4 cut(s)	85, 532, 607, 624
BstSCI	CCNGG	1 cut(s)	319
BstV1I	GCAGC	2 cut(s)	130, 159
BsuRI	GGCC	1 cut(s)	325
BtgI	CCRYGG	1 cut(s)	289
BtsCI	GGATG	3 cut(s)	202, 505, 764
BtsIMutI	CAGTG	2 cut(s)	174, 699
BveI	ACCTGC	1 cut(s)	666
Cac8I	GCNNGC	1 cut(s)	622
Cfr13I	GGNCC	1 cut(s)	323
Csp6I	GTAC	7 cut(s)	217, 338, 398, 550, 586, 592, 762
CviAII	CATG	5 cut(s)	82, 529, 604, 621, 719
CviJI	RGCY	6 cut(s)	60, 121, 259, 325, 682, 793
CviKI_1	RGCY	6 cut(s)	60, 121, 259, 325, 682, 793
CviQI	GTAC	7 cut(s)	217, 338, 398, 550, 586, 592, 762
DdeI	CTNAG	3 cut(s)	33, 43, 114
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	319
EcoT22I	ATGCAT	1 cut(s)	414
FaeI	CATG	5 cut(s)	85, 532, 607, 624, 722
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FatI	CATG	5 cut(s)	81, 528, 603, 620, 718
Fnu4HI	GCNGC	3 cut(s)	119, 173, 176
FokI	GGATG	3 cut(s)	209, 512, 771
Fsp4HI	GCNGC	3 cut(s)	119, 173, 176
FspBI	CTAG	1 cut(s)	798
GluI	GCNGC	3 cut(s)	119, 173, 176
GsuI	CTGGAG	1 cut(s)	806
HaeIII	GGCC	1 cut(s)	325
Hin1II	CATG	5 cut(s)	85, 532, 607, 624, 722
HinfI	GANTC	3 cut(s)	304, 733, 834
HphI	GGTGA	2 cut(s)	31, 843
Hpy166II	GTNNAC	3 cut(s)	39, 594, 851
Hpy188I	TCNGA	8 cut(s)	28, 46, 303, 309, 369, 666, 675, 738
Hpy188III	TCNNGA	3 cut(s)	137, 756, 785
Hpy8I	GTNNAC	3 cut(s)	39, 594, 851
HpyAV	CCTTC	3 cut(s)	364, 604, 624
HpyCH4III	ACNGT	4 cut(s)	169, 290, 694, 775
HpyCH4IV	ACGT	2 cut(s)	219, 421
HpyCH4V	TGCA	3 cut(s)	211, 412, 559
HpyF10VI	GCNNNNNNNGC	1 cut(s)	818
HpyF3I	CTNAG	3 cut(s)	33, 43, 114
HpySE526I	ACGT	2 cut(s)	219, 421
Hsp92II	CATG	5 cut(s)	85, 532, 607, 624, 722
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	1 cut(s)	790
LpnPI	CCDG	9 cut(s)	122, 179, 197, 306, 333, 671, 741, 770, 851
Lsp1109I	GCAGC	2 cut(s)	130, 159
LweI	GCATC	3 cut(s)	303, 490, 575
MaeI	CTAG	1 cut(s)	798
MaeII	ACGT	2 cut(s)	219, 421
MaeIII	GTNAC	1 cut(s)	653
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	6 cut(s)	59, 153, 533, 688, 751, 884
MfeI	CAATTG	2 cut(s)	144, 728
MhlI	GDGCHC	1 cut(s)	448
MlyI	GAGTC	1 cut(s)	843
MmeI	TCCRAC	1 cut(s)	554
Mph1103I	ATGCAT	1 cut(s)	414
MseI	TTAA	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	321
MunI	CAATTG	2 cut(s)	144, 728
Mva1269I	GAATGC	1 cut(s)	745
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	818
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	5 cut(s)	85, 532, 607, 624, 722
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	4 cut(s)	85, 532, 607, 624
NspV	TTCGAA	1 cut(s)	519
PaeI	GCATGC	1 cut(s)	624
PciI	ACATGT	2 cut(s)	81, 603
PctI	GAATGC	1 cut(s)	745
PfeI	GAWTC	2 cut(s)	304, 733
PkrI	GCNGC	3 cut(s)	120, 174, 177
PleI	GAGTC	1 cut(s)	842
PpsI	GAGTC	1 cut(s)	842
PscI	ACATGT	2 cut(s)	81, 603
PsiI	TTATAA	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	323
RsaI	GTAC	7 cut(s)	218, 339, 399, 551, 587, 593, 763
RsaNI	GTAC	7 cut(s)	217, 338, 398, 550, 586, 592, 762
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	3 cut(s)	119, 173, 176
Sau3AI	GATC	1 cut(s)	20
Sau96I	GGNCC	1 cut(s)	323
ScaI	AGTACT	2 cut(s)	551, 587
SchI	GAGTC	1 cut(s)	843
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	448
SfaNI	GCATC	3 cut(s)	303, 490, 575
SfuI	TTCGAA	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	625
SmoI	CTYRAG	1 cut(s)	625
SphI	GCATGC	1 cut(s)	624
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	1 cut(s)	798
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	4 cut(s)	169, 290, 694, 775
TaiI	ACGT	2 cut(s)	222, 424
TaqI	TCGA	2 cut(s)	519, 862
TatI	WGTACW	5 cut(s)	337, 397, 549, 585, 761
TauI	GCSGC	1 cut(s)	178
TfiI	GAWTC	2 cut(s)	304, 733
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	2 cut(s)	174, 699
TseI	GCWGC	2 cut(s)	118, 172
TspDTI	ATGAA	5 cut(s)	17, 141, 345, 522, 707
TspGWI	ACGGA	1 cut(s)	611
TspRI	CASTG	2 cut(s)	174, 699
XapI	RAATTY	1 cut(s)	803
XceI	RCATGY	4 cut(s)	85, 532, 607, 624
XspI	CTAG	1 cut(s)	798
ZrmI	AGTACT	2 cut(s)	551, 587
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.