Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000162

Physical Location & Seq

Genomic Coordinates Forward (+)

7638471 .. 7638980

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1052500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGTTAGGTGGCTTGCGCGCTTCTTTCATTATCTTGATTGCTACTTCATCGCTCGGAGGTCACTTCCTCCGCTACATCAAGTTGGGATGAACTACTTCCGCGATTTGGTTTACCGGGAGGTAAATGCGGATGTGAGAGTTGCTGTAATTCGTGTTATTGGAACAGAATGCGAGGGGGAGGAAATCAACAGAGAAGTATTGAAGAATGTGATAAATGTGTGTGTAGAATTTGGAATGGGAAAAATGGATCCTTATAGAGAGGACTTTGAAGAACACATGCTACGAGAAACTGGTGAATACTATTCTCGTAAAGCATCAAGTTGGATCACGGAGGACAATTACTCGGATTACATGTCGAAAGTAGAGGAAAGCGTGAAAATGGAGAAGGATCGAGTTTCTCATTACCTGCAATCGAGCAGTGAGAAGAAGCTGGTGGAAAAAGTGCAACATGAGTTGGTGGTGGTTTATGCAACTCAACTGATCGAAAAGGAGCATTTTGCAGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000228 GO:0000793 GO:0000794 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009524 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010154 GO:0015630 GO:0019899 GO:0022414 GO:0023052 GO:0031461 GO:0031625 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0099402 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Cullin Cullin_Nedd8

Protein Analysis

170

Amino Acids

20.06

Weight (kDa)

5.57

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin	PF00888	2 - 164	9.6e-34	Cullin alpha solenoid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca	FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica	MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica	Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis	pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis	RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata	RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora	Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa	Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha	Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana	Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	414, 491
AccII	CGCG	2 cut(s)	19, 102
AciI	CCGC	3 cut(s)	71, 100, 128
AclWI	GGATC	4 cut(s)	242, 255, 332, 396
AcsI	RAATTY	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	106
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	2 cut(s)	202, 269
AluBI	AGCT	1 cut(s)	430
AluI	AGCT	1 cut(s)	430
AlwI	GGATC	4 cut(s)	242, 255, 332, 396
ApoI	RAATTY	1 cut(s)	227
Asp700I	GAANNNNTTC	1 cut(s)	95
AspLEI	GCGC	2 cut(s)	19, 21
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	116
BfuAI	ACCTGC	2 cut(s)	414, 491
Bme1390I	CCNGG	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	295
BseGI	GGATG	2 cut(s)	93, 136
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseNI	ACTGG	1 cut(s)	295
BsePI	GCGCGC	1 cut(s)	17
Bsh1236I	CGCG	2 cut(s)	19, 102
BsiSI	CCGG	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	173
Bsp143I	GATC	4 cut(s)	247, 324, 388, 480
BspACI	CCGC	3 cut(s)	71, 100, 128
BspFNI	CGCG	2 cut(s)	19, 102
BspLI	GGNNCC	1 cut(s)	249
BspMI	ACCTGC	2 cut(s)	414, 491
BspPI	GGATC	4 cut(s)	242, 255, 332, 396
BsrI	ACTGG	1 cut(s)	295
BssHII	GCGCGC	1 cut(s)	17
BssMI	GATC	4 cut(s)	247, 324, 388, 480
BstC8I	GCNNGC	2 cut(s)	15, 19
BstF5I	GGATG	2 cut(s)	93, 136
BstFNI	CGCG	2 cut(s)	19, 102
BstHHI	GCGC	2 cut(s)	19, 21
BstKTI	GATC	4 cut(s)	250, 327, 391, 483
BstMBI	GATC	4 cut(s)	247, 324, 388, 480
BstNSI	RCATGY	2 cut(s)	280, 355
BstSCI	CCNGG	1 cut(s)	114
BstUI	CGCG	2 cut(s)	19, 102
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BtgZI	GCGATG	1 cut(s)	34
BtsCI	GGATG	2 cut(s)	93, 136
BtsI	GCAGTG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	424
BveI	ACCTGC	2 cut(s)	414, 491
Cac8I	GCNNGC	2 cut(s)	15, 19
CfoI	GCGC	2 cut(s)	19, 21
CviAII	CATG	3 cut(s)	277, 352, 449
CviJI	RGCY	2 cut(s)	13, 430
CviKI_1	RGCY	2 cut(s)	13, 430
DpnI	GATC	4 cut(s)	249, 326, 390, 482
DpnII	GATC	4 cut(s)	247, 324, 388, 480
FaeI	CATG	3 cut(s)	280, 355, 452
FaiI	YATR	5 cut(s)	255, 278, 353, 450, 468
FatI	CATG	3 cut(s)	276, 351, 448
FokI	GGATG	2 cut(s)	100, 143
GlaI	GCGC	2 cut(s)	18, 20
HapII	CCGG	1 cut(s)	115
HhaI	GCGC	2 cut(s)	19, 21
Hin1II	CATG	3 cut(s)	280, 355, 452
Hin6I	GCGC	2 cut(s)	17, 19
HinP1I	GCGC	2 cut(s)	17, 19
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	2 cut(s)	57, 346
Hpy188III	TCNNGA	2 cut(s)	35, 507
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	379
HpyCH4V	TGCA	4 cut(s)	409, 445, 470, 500
Hsp92II	CATG	3 cut(s)	280, 355, 452
HspAI	GCGC	2 cut(s)	17, 19
Kzo9I	GATC	4 cut(s)	247, 324, 388, 480
LmnI	GCTCC	1 cut(s)	490
LpnPI	CCDG	5 cut(s)	128, 276, 416, 419, 486
LweI	GCATC	1 cut(s)	323
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	4 cut(s)	249, 326, 390, 482
MboI	GATC	4 cut(s)	247, 324, 388, 480
MboII	GAAGA	3 cut(s)	214, 281, 436
MflI	RGATCY	1 cut(s)	247
MluCI	AATT	3 cut(s)	147, 227, 337
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	8 cut(s)	51, 78, 112, 166, 172, 253, 325, 358
MroXI	GAANNNNTTC	1 cut(s)	95
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	173
MvnI	CGCG	2 cut(s)	19, 102
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	4 cut(s)	247, 324, 388, 480
NlaIII	CATG	3 cut(s)	280, 355, 452
NlaIV	GGNNCC	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	60
NspI	RCATGY	2 cut(s)	280, 355
PauI	GCGCGC	1 cut(s)	17
PciI	ACATGT	1 cut(s)	351
PctI	GAATGC	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	95
PscI	ACATGT	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	249
PsrI	GAACNNNNNNTAC	2 cut(s)	264, 296
PsuI	RGATCY	1 cut(s)	247
PteI	GCGCGC	1 cut(s)	17
Sau3AI	GATC	4 cut(s)	247, 324, 388, 480
ScrFI	CCNGG	1 cut(s)	116
SetI	ASST	6 cut(s)	11, 62, 123, 408, 432, 505
SfaNI	GCATC	1 cut(s)	323
Sse9I	AATT	3 cut(s)	147, 227, 337
SsiI	CCGC	3 cut(s)	71, 100, 128
StyD4I	CCNGG	1 cut(s)	114
TaqI	TCGA	4 cut(s)	356, 391, 413, 483
TasI	AATT	3 cut(s)	147, 227, 337
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	1 cut(s)	60
Tsp45I	GTSAC	1 cut(s)	60
TspDTI	ATGAA	3 cut(s)	17, 37, 104
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	1 cut(s)	424
XapI	RAATTY	1 cut(s)	227
XceI	RCATGY	2 cut(s)	280, 355
XmnI	GAANNNNTTC	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.