Rroxscaffold_1G00041600

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
59466441 .. 59468788
2348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00041600.1

Sequence Viewer

Length: 2103 bp
ATGGGTCCAGGCTCCCCTATCGACTTCGACCAAGGATGGGACGACATAGAGTGGGCTATCGTCAAGCTAACCCGAATCCTCGAGGGGTTGCTGGAGACGCCGTTCGACGCCGAATACCACATCTATGTCTACTCCACCGTCTACAACATGTGCGACGACCACTCCCACCAGGTGTACGAGGCTTGTCGCGAGACCATCGAGGCCTACAACACTGAGATTGTGTTGCCTAGTTTGGCAGACAAGCACGGCGCGCTTTTGCTCAGGGAGTTGGTCAGAAGGTGGAGGAATCACAAGGCTCTGATGCGGTGGCTATGGCGTTTCTTTATTGTTCCTGATCAGTATTATGTTGAGAAAGCAAAGGTTCCTGGGATTAAGCAGGCTGGGATTATCGGGTTTCGCGACGAGGTTTATGAGAAGGTGAAGGAGAATGTTGGGGGTGCTGTGATGTGGATGATTAATGAGGAGAGGGAAGGGGGGCAGATTGACAGGGGACTGTTGAAGGATGTGGTGGAGATTTTTGTGAAATTGGGGAATGGGGGATTGTGGGTTTACGAAGCGGATTTTGAGGAGGAGATGATGAGGGATATTTGTGAGTACTATTCTCGGAGAGCGTCGAGTTGGATTGTGGAGGATTCAGGGCCGGAGTATATGTTTAAGGCAGAGGAATGCTTGAGGAGGGAGAAGGAGAGAGTTTTGCATTACCTGCATTCGAGCAGTGAGGAGAAGTTGTTGGAGAAAGTGCATTATGAGCTGGTGGTGGTTTATGCACACCAACTGCTCGATGAAAGGGATTCTGGGTGTAGTGCTTTGCTTCGAGATAATAAGGAGGAGGATCTGGCTAGGATGTATAGGCTTTACAGTAGAACACCTAAAGAGTTGGAACTTGTTGTTAATGTGTTCAGAAAATATGTTACTGATGAAGGTAAAGCGTTTGTGCAACAAGCTGAAGAAGCTGCAAGTAACCAGCAGACTTCAAATGCAGAGCACGGGGTGGTCCTTATCAGAAAAGTAATTGAAATGTATGACAAGTATGTGGGATATGTCGATGATTGCTTCATGAAAGACGCACTCCTTCAGAAGGCTATGAGAGAGGCGTTTGAGGTGTTTTGCAACCTACCTGTTTGTGGGAGTCCGAGTGCTGAATTGCTTGCTGGATTCTGTGATAGTATTCTTAAGAAGGGTGGCTGTCAGCTTAGTGATGAGGCCATAGATGAAAGTTTTGAGAAGGTTGTTAAGAGTGCCAATGATAACCATGAGAATAGTTTTCTAACAAAGCTGAAGCAGAACTGTGGTGGACAGTTCACTGCAAAGATGGAAGGAATGGTCACAGATTTAACATTGGCCAAGGACACTCAGACCAACTTCAAAAATTTTCTTGACAGCAATCCAAATTTACAACCAGGGATCGATTTGACAGTCACTATTCTGACAACTGGTTACTGGCCAAGTTACAAATCATCTGATCTTAACCTTCCTGAAGAGATGGTCAAGTGTGTTGAAGTTTTCAATGAATTCTTTGACACACAAAAGAAATTGAGAAAGCTTTCATGGATTTACTCCTTGGGTACTTGCAATGTCATTGCCAAGTTTGAACCAAAAACCATGGAATTGGTTGCGTCAACATATCAGGCTACTCTCCTTCTGCTCTTCAATTATGCTGATAGATTAAGCTATTCAGAAATATTGAATCAGTTAAACCTCACCAATGAGGACTTGGTTAGATTGCTTCTTTCGTTGTCATGTGCCAAGTACAAGATCCTCATCAAGGAACCAAATACCAAGACTATCTCACCAAATGACGACTTTATGTTCAACTATAAGTTCACTGATAAGATGAAAAGAATTGAGATTCCTCTCCTACCAGTTGATGAAAGGACGAAGGTGATTGAGGAAGTTGACAAAGACAGGCGATATGCCATTGATGCTGCAATTGTAAGGATTATGAAGGAGGAATGCTTAAGTGTAAAGATAGGAATAAGTGACTTGTATGATAAGCTTTATGCTAAAGGGGAACAAGCATGGTTGTTCCTATCATCACAACCACAATGCCACATGAGAAAGCTAGAAATGGAGCTGTCATCCAAGTTGTATTTCATTCTTTAA

Protein Analysis

700

Amino Acids

81.05

Weight (kDa)

5.12

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cullin PF00888 40 - 411 3e-82 Cullin alpha solenoid domain
Cullin PF00888 412 - 451 3e-10 Cullin alpha solenoid domain
Cullin_AB PF26557 475 - 608 2.9e-40 Cullin alpha+beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 80
Acc36I ACCTGC 1 cut(s) 711
AccI GTMKAC 2 cut(s) 129, 141
AccII CGCG 3 cut(s) 189, 251, 399
AciI CCGC 2 cut(s) 304, 557
AclWI GGATC 3 cut(s) 840, 1412, 1750
AcoI YGGCCR 2 cut(s) 1341, 1442
AcsI RAATTY 3 cut(s) 1369, 1390, 1511
AcuI CTGAAG 4 cut(s) 966, 1058, 1298, 1497
AcyI GRCGYC 2 cut(s) 98, 108
AdeI CACNNNGTG 2 cut(s) 172, 991
AfaI GTAC 4 cut(s) 176, 596, 1567, 1751
AfiI CCNNNNNNNGG 4 cut(s) 37, 1078, 1124, 1765
AflII CTTAAG 2 cut(s) 1172, 1957
AflIII ACRYGT 1 cut(s) 147
AjnI CCWGG 4 cut(s) 7, 168, 364, 1399
AjuI GAANNNNNNNTTGG 1 cut(s) 2075
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
Alw21I GWGCWC 1 cut(s) 987
Alw26I GTCTC 2 cut(s) 89, 185
AlwI GGATC 3 cut(s) 840, 1412, 1750
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 5 cut(s) 201, 638, 1203, 1341, 1442
ApeKI GCWGC 2 cut(s) 953, 1925
ApoI RAATTY 3 cut(s) 1369, 1390, 1511
AseI ATTAAT 1 cut(s) 456
Asp700I GAANNNNTTC 1 cut(s) 1543
AspLEI GCGC 2 cut(s) 251, 253
AspS9I GGNCC 3 cut(s) 5, 638, 994
AsuHPI GGTGA 4 cut(s) 430, 1693, 1782, 1894
AvaI CYCGRG 1 cut(s) 80
AvaII GGWCC 2 cut(s) 5, 994
BalI TGGCCA 2 cut(s) 1343, 1444
Bbv12I GWGCWC 1 cut(s) 987
BbvI GCAGC 2 cut(s) 940, 1912
BccI CCATC 4 cut(s) 30, 203, 1306, 1477
BceAI ACGGC 2 cut(s) 85, 262
BciT130I CCWGG 4 cut(s) 9, 170, 366, 1401
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 89, 185
BfaI CTAG 3 cut(s) 228, 840, 2063
BfrI CTTAAG 2 cut(s) 1172, 1957
BfuAI ACCTGC 1 cut(s) 711
BisI GCNGC 2 cut(s) 954, 1926
BlsI GCNGC 2 cut(s) 955, 1927
BmcAI AGTACT 1 cut(s) 596
Bme1390I CCNGG 4 cut(s) 9, 170, 366, 1401
Bme18I GGWCC 2 cut(s) 5, 994
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 3 cut(s) 5, 638, 994
BmiI GGNNCC 4 cut(s) 6, 13, 363, 1770
BmrFI CCNGG 4 cut(s) 9, 170, 366, 1401
BmsI GCATC 2 cut(s) 291, 1912
BpmI CTGGAG 1 cut(s) 113
Bpu10I CCTNAGC 1 cut(s) 260
BpuEI CTTGAG 1 cut(s) 691
Bsa29I ATCGAT 1 cut(s) 1407
BsaBI GATNNNNATC 1 cut(s) 1760
BsaHI GRCGYC 2 cut(s) 98, 108
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 6 cut(s) 31, 365, 1344, 1400, 1560, 1602
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 1078, 1124, 1765
Bse1I ACTGG 3 cut(s) 1438, 1445, 1862
Bse3DI GCAATG 2 cut(s) 1578, 1579
Bse8I GATNNNNATC 1 cut(s) 1760
BseBI CCWGG 4 cut(s) 9, 170, 366, 1401
BseCI ATCGAT 1 cut(s) 1407
BseDI CCNNGG 6 cut(s) 31, 365, 1344, 1400, 1560, 1602
BseGI GGATG 5 cut(s) 41, 456, 508, 849, 2078
BseJI GATNNNNATC 1 cut(s) 1760
BseLI CCNNNNNNNGG 4 cut(s) 37, 1078, 1124, 1765
BseMI GCAATG 2 cut(s) 1578, 1579
BseMII CTCAG 3 cut(s) 204, 274, 1367
BseNI ACTGG 3 cut(s) 1438, 1445, 1862
BsePI GCGCGC 1 cut(s) 249
BseRI GAGGAG 6 cut(s) 476, 581, 584, 688, 734, 842
BseXI GCAGC 2 cut(s) 940, 1912
BseYI CCCAGC 1 cut(s) 380
Bsh1236I CGCG 3 cut(s) 189, 251, 399
BshFI GGCC 5 cut(s) 203, 640, 1205, 1343, 1444
BshVI ATCGAT 1 cut(s) 1407
BsiHKAI GWGCWC 1 cut(s) 987
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 1 cut(s) 641
BslFI GGGAC 2 cut(s) 53, 504
BslI CCNNNNNNNGG 4 cut(s) 37, 1078, 1124, 1765
BsmAI GTCTC 2 cut(s) 89, 185
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 2 cut(s) 53, 504
BsmI GAATGC 3 cut(s) 671, 706, 1958
BsnI GGCC 5 cut(s) 203, 640, 1205, 1343, 1444
Bso31I GGTCTC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 987
Bsp143I GATC 5 cut(s) 334, 832, 1404, 1462, 1755
Bsp19I CCATGG 1 cut(s) 1602
Bsp68I TCGCGA 2 cut(s) 189, 399
BspACI CCGC 2 cut(s) 304, 557
BspANI GGCC 5 cut(s) 203, 640, 1205, 1343, 1444
BspCNI CTCAG 3 cut(s) 205, 273, 1366
BspDI ATCGAT 1 cut(s) 1407
BspFNI CGCG 3 cut(s) 189, 251, 399
BspHI TCATGA 1 cut(s) 1056
BspLI GGNNCC 4 cut(s) 6, 13, 363, 1770
BspMI ACCTGC 1 cut(s) 711
BspPI GGATC 3 cut(s) 840, 1412, 1750
BspQI GCTCTTC 1 cut(s) 1652
BspTI CTTAAG 2 cut(s) 1172, 1957
BspTNI GGTCTC 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 1578, 1579
BsrI ACTGG 3 cut(s) 1438, 1445, 1862
BssECI CCNNGG 6 cut(s) 31, 365, 1344, 1400, 1560, 1602
BssHII GCGCGC 1 cut(s) 249
BssMI GATC 5 cut(s) 334, 832, 1404, 1462, 1755
BssNI GRCGYC 2 cut(s) 98, 108
BssT1I CCWWGG 4 cut(s) 31, 1344, 1560, 1602
Bst2UI CCWGG 4 cut(s) 9, 170, 366, 1401
Bst4CI ACNGT 6 cut(s) 139, 495, 860, 1289, 1299, 1417
Bst6I CTCTTC 2 cut(s) 1473, 1652
BstACI GRCGYC 2 cut(s) 98, 108
BstAFI CTTAAG 2 cut(s) 1172, 1957
BstAPI GCANNNNNTGC 1 cut(s) 703
BstC8I GCNNGC 3 cut(s) 251, 378, 1149
BstDEI CTNAG 4 cut(s) 213, 260, 1193, 1353
BstDSI CCRYGG 1 cut(s) 1602
BstENI CCTNNNNNAGG 2 cut(s) 1076, 1763
BstF5I GGATG 5 cut(s) 41, 456, 508, 849, 2078
BstFNI CGCG 3 cut(s) 189, 251, 399
BstHHI GCGC 2 cut(s) 251, 253
BstKTI GATC 5 cut(s) 337, 835, 1407, 1465, 1758
BstMAI GTCTC 2 cut(s) 89, 185
BstMBI GATC 5 cut(s) 334, 832, 1404, 1462, 1755
BstMWI GCNNNNNNNGC 6 cut(s) 97, 250, 703, 748, 950, 1922
BstNI CCWGG 4 cut(s) 9, 170, 366, 1401
BstNSI RCATGY 1 cut(s) 151
BstSCI CCNGG 4 cut(s) 7, 168, 364, 1399
BstUI CGCG 3 cut(s) 189, 251, 399
BstV1I GCAGC 2 cut(s) 940, 1912
BstX2I RGATCY 2 cut(s) 832, 1755
BstXI CCANNNNNNTGG 1 cut(s) 1609
BstYI RGATCY 2 cut(s) 832, 1755
Bsu15I ATCGAT 1 cut(s) 1407
BsuRI GGCC 5 cut(s) 203, 640, 1205, 1343, 1444
BsuTUI ATCGAT 1 cut(s) 1407
BtgI CCRYGG 1 cut(s) 1602
BtsCI GGATG 5 cut(s) 41, 456, 508, 849, 2078
BtsI GCAGTG 2 cut(s) 721, 1302
BtsIMutI CAGTG 4 cut(s) 210, 721, 1302, 1824
BtuMI TCGCGA 2 cut(s) 189, 399
BveI ACCTGC 1 cut(s) 711
Cac8I GCNNGC 3 cut(s) 251, 378, 1149
CciI TCATGA 1 cut(s) 1056
CfoI GCGC 2 cut(s) 251, 253
Cfr13I GGNCC 3 cut(s) 5, 638, 994
ClaI ATCGAT 1 cut(s) 1407
CseI GACGC 5 cut(s) 106, 116, 600, 1073, 1605
CsiI ACCWGGT 1 cut(s) 168
Csp6I GTAC 4 cut(s) 175, 595, 1566, 1750
CviAII CATG 8 cut(s) 148, 1057, 1253, 1548, 1603, 1740, 2019, 2053
CviQI GTAC 4 cut(s) 175, 595, 1566, 1750
DdeI CTNAG 4 cut(s) 213, 260, 1193, 1353
DpnI GATC 5 cut(s) 336, 834, 1406, 1464, 1757
DpnII GATC 5 cut(s) 334, 832, 1404, 1462, 1755
DraIII CACNNNGTG 2 cut(s) 172, 991
EaeI YGGCCR 2 cut(s) 1341, 1442
Eam1104I CTCTTC 2 cut(s) 1473, 1652
EarI CTCTTC 2 cut(s) 1473, 1652
Eco130I CCWWGG 4 cut(s) 31, 1344, 1560, 1602
Eco147I AGGCCT 1 cut(s) 203
Eco31I GGTCTC 1 cut(s) 185
Eco47I GGWCC 2 cut(s) 5, 994
Eco57I CTGAAG 4 cut(s) 966, 1058, 1298, 1497
Eco88I CYCGRG 1 cut(s) 80
EcoNI CCTNNNNNAGG 2 cut(s) 1076, 1763
EcoRI GAATTC 1 cut(s) 1511
EcoRII CCWGG 4 cut(s) 7, 168, 364, 1399
EcoT14I CCWWGG 4 cut(s) 31, 1344, 1560, 1602
ErhI CCWWGG 4 cut(s) 31, 1344, 1560, 1602
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 8 cut(s) 151, 1060, 1256, 1551, 1606, 1743, 2022, 2056
FaqI GGGAC 2 cut(s) 53, 504
FatI CATG 8 cut(s) 147, 1056, 1252, 1547, 1602, 1739, 2018, 2052
FbaI TGATCA 1 cut(s) 334
FblI GTMKAC 2 cut(s) 129, 141
Fnu4HI GCNGC 2 cut(s) 954, 1926
FokI GGATG 5 cut(s) 48, 463, 515, 856, 2065
Fsp4HI GCNGC 2 cut(s) 954, 1926
FspBI CTAG 3 cut(s) 228, 840, 2063
GlaI GCGC 2 cut(s) 250, 252
GluI GCNGC 2 cut(s) 954, 1926
GsaI CCCAGC 1 cut(s) 384
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 5 cut(s) 203, 640, 1205, 1343, 1444
HapII CCGG 1 cut(s) 641
HgaI GACGC 5 cut(s) 106, 116, 600, 1073, 1605
HhaI GCGC 2 cut(s) 251, 253
Hin1I GRCGYC 2 cut(s) 98, 108
Hin1II CATG 8 cut(s) 151, 1060, 1256, 1551, 1606, 1743, 2022, 2056
Hin6I GCGC 2 cut(s) 249, 251
HinP1I GCGC 2 cut(s) 249, 251
HincII GTYRAC 2 cut(s) 1620, 1897
HindII GTYRAC 2 cut(s) 1620, 1897
HindIII AAGCTT 2 cut(s) 1541, 1994
HinfI GANTC 8 cut(s) 75, 286, 632, 791, 1129, 1155, 1687, 1849
HpaII CCGG 1 cut(s) 641
HphI GGTGA 4 cut(s) 430, 1693, 1782, 1894
Hpy166II GTNNAC 9 cut(s) 130, 142, 175, 550, 1295, 1302, 1620, 1824, 1897
Hpy188III TCNNGA 7 cut(s) 188, 332, 398, 815, 1057, 1376, 1475
Hpy8I GTNNAC 9 cut(s) 130, 142, 175, 550, 1295, 1302, 1620, 1824, 1897
Hpy99I CGWCG 4 cut(s) 110, 158, 404, 616
HpyCH4III ACNGT 6 cut(s) 139, 495, 860, 1289, 1299, 1417
HpyF10VI GCNNNNNNNGC 6 cut(s) 97, 250, 703, 748, 950, 1922
HpyF3I CTNAG 4 cut(s) 213, 260, 1193, 1353
Hsp92I GRCGYC 2 cut(s) 98, 108
Hsp92II CATG 8 cut(s) 151, 1060, 1256, 1551, 1606, 1743, 2022, 2056
HspAI GCGC 2 cut(s) 249, 251
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 5 cut(s) 334, 832, 1404, 1462, 1755
LguI GCTCTTC 1 cut(s) 1652
LmnI GCTCC 2 cut(s) 17, 2071
Lsp1109I GCAGC 2 cut(s) 940, 1912
LweI GCATC 2 cut(s) 291, 1912
MabI ACCWGGT 1 cut(s) 168
MaeI CTAG 3 cut(s) 228, 840, 2063
MaeIII GTNAC 7 cut(s) 910, 959, 1324, 1417, 1436, 1448, 1979
MalI GATC 5 cut(s) 336, 834, 1406, 1464, 1757
MboI GATC 5 cut(s) 334, 832, 1404, 1462, 1755
MboII GAAGA 3 cut(s) 959, 1490, 1639
MfeI CAATTG 1 cut(s) 1929
MflI RGATCY 2 cut(s) 832, 1755
MhlI GDGCHC 1 cut(s) 987
MlsI TGGCCA 2 cut(s) 1343, 1444
MluNI TGGCCA 2 cut(s) 1343, 1444
MlyI GAGTC 1 cut(s) 1138
MmeI TCCRAC 3 cut(s) 599, 711, 858
Mox20I TGGCCA 2 cut(s) 1343, 1444
MroXI GAANNNNTTC 1 cut(s) 1543
MscI TGGCCA 2 cut(s) 1343, 1444
MslI CAYNNNNRTG 1 cut(s) 123
Msp20I TGGCCA 2 cut(s) 1343, 1444
MspCI CTTAAG 2 cut(s) 1172, 1957
MspI CCGG 1 cut(s) 641
MspR9I CCNGG 4 cut(s) 9, 170, 366, 1401
MunI CAATTG 1 cut(s) 1929
Mva1269I GAATGC 3 cut(s) 671, 706, 1958
MvaI CCWGG 4 cut(s) 9, 170, 366, 1401
MvnI CGCG 3 cut(s) 189, 251, 399
MwoI GCNNNNNNNGC 6 cut(s) 97, 250, 703, 748, 950, 1922
NcoI CCATGG 1 cut(s) 1602
NdeII GATC 5 cut(s) 334, 832, 1404, 1462, 1755
NlaIII CATG 8 cut(s) 151, 1060, 1256, 1551, 1606, 1743, 2022, 2056
NlaIV GGNNCC 4 cut(s) 6, 13, 363, 1770
NmuCI GTSAC 3 cut(s) 1324, 1417, 1979
NruI TCGCGA 2 cut(s) 189, 399
NspI RCATGY 1 cut(s) 151
PaeR7I CTCGAG 1 cut(s) 80
PagI TCATGA 1 cut(s) 1056
PauI GCGCGC 1 cut(s) 249
PceI AGGCCT 1 cut(s) 203
PciI ACATGT 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 1652
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PctI GAATGC 3 cut(s) 671, 706, 1958
PdmI GAANNNNTTC 1 cut(s) 1543
PfeI GAWTC 7 cut(s) 75, 286, 632, 791, 1155, 1687, 1849
PkrI GCNGC 2 cut(s) 955, 1927
PleI GAGTC 1 cut(s) 1137
PpsI GAGTC 1 cut(s) 1137
PscI ACATGT 1 cut(s) 147
PshBI ATTAAT 1 cut(s) 456
Psp6I CCWGG 4 cut(s) 7, 168, 364, 1399
PspFI CCCAGC 1 cut(s) 380
PspGI CCWGG 4 cut(s) 7, 168, 364, 1399
PspN4I GGNNCC 4 cut(s) 6, 13, 363, 1770
PspPI GGNCC 3 cut(s) 5, 638, 994
PspXI VCTCGAGB 1 cut(s) 80
PsuI RGATCY 2 cut(s) 832, 1755
PteI GCGCGC 1 cut(s) 249
RruI TCGCGA 2 cut(s) 189, 399
RsaI GTAC 4 cut(s) 176, 596, 1567, 1751
RsaNI GTAC 4 cut(s) 175, 595, 1566, 1750
RseI CAYNNNNRTG 1 cut(s) 123
SapI GCTCTTC 1 cut(s) 1652
SatI GCNGC 2 cut(s) 954, 1926
Sau3AI GATC 5 cut(s) 334, 832, 1404, 1462, 1755
Sau96I GGNCC 3 cut(s) 5, 638, 994
ScaI AGTACT 1 cut(s) 596
SchI GAGTC 1 cut(s) 1138
ScrFI CCNGG 4 cut(s) 9, 170, 366, 1401
SduI GDGCHC 1 cut(s) 987
SexAI ACCWGGT 1 cut(s) 168
SfaNI GCATC 2 cut(s) 291, 1912
Sfr274I CTCGAG 1 cut(s) 80
SinI GGWCC 2 cut(s) 5, 994
SlaI CTCGAG 1 cut(s) 80
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 4 cut(s) 80, 670, 1172, 1957
SmoI CTYRAG 4 cut(s) 80, 670, 1172, 1957
SseBI AGGCCT 1 cut(s) 203
SsiI CCGC 2 cut(s) 304, 557
SspI AATATT 1 cut(s) 1683
SspMI CTAG 3 cut(s) 228, 840, 2063
StuI AGGCCT 1 cut(s) 203
StyD4I CCNGG 4 cut(s) 7, 168, 364, 1399
StyI CCWWGG 4 cut(s) 31, 1344, 1560, 1602
TaaI ACNGT 6 cut(s) 139, 495, 860, 1289, 1299, 1417
TatI WGTACW 2 cut(s) 594, 1749
TfiI GAWTC 7 cut(s) 75, 286, 632, 791, 1155, 1687, 1849
TscAI CASTG 4 cut(s) 217, 721, 1309, 1831
TseFI GTSAC 3 cut(s) 1324, 1417, 1979
TseI GCWGC 2 cut(s) 953, 1925
Tsp45I GTSAC 3 cut(s) 1324, 1417, 1979
TspRI CASTG 4 cut(s) 217, 721, 1309, 1831
Vha464I CTTAAG 2 cut(s) 1172, 1957
VpaK11BI GGWCC 2 cut(s) 5, 994
VspI ATTAAT 1 cut(s) 456
XagI CCTNNNNNAGG 2 cut(s) 1076, 1763
XapI RAATTY 3 cut(s) 1369, 1390, 1511
XceI RCATGY 1 cut(s) 151
XcmI CCANNNNNNNNNTGG 1 cut(s) 1711
XhoI CTCGAG 1 cut(s) 80
XmiI GTMKAC 2 cut(s) 129, 141
XmnI GAANNNNTTC 1 cut(s) 1543
XspI CTAG 3 cut(s) 228, 840, 2063
ZrmI AGTACT 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.