MD13G1170300.v1.1

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
13830926 .. 13837327
6402 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1170300.v1.1.491

Sequence Viewer

Length: 2235 bp
ATGGCGATGAACGAGCGGAAGACCATTGATTTAGAACAAGGATGGGAGTTCATGCAGAAGGGGATCACAAAGCTGAAGAACATTCTAGAAGGGTTGCCCGAGCCGCAGTTCAGTTCTGAGGACTACATGATGCTCTACACAACCATATACAATATGTGTACTCAAAAGCCACCACATGACTATTCACAGCAGCTATATGACAAGTACAGGGAATCTTTTGAAGAGTACATTACTTCGACGGTTTTGCCATCTTTGCGAGAGAAGCACGATGAGTTCATGTTGAGAGAGCTTGTGAAAAGGTGGACCAACCATAAAATTATGGTCAGGTGGCTTTCTCGTTTCTTTCATTATCTTGATCGCTATTTTATAGCTCGGCGATCACTTCCACCCCTAAATGAAGTTGGACTTGCTTGCTTCCGAGATCTGGTCTACCAAGAATTGAAACCAAAAGTAAGAAGTGCTGTAATATCTCTGATTGATCAAGAACGTGAAGGAGAGCAGATTGACCGAGCTCTCTTGAAGAATGTTCTGGATATATTTGTTGAGATTGGAATGGGACAAATGGATCACTATGAAAATGACTTTGAAGCAGACATGCTTAAAGACACTGCTGCCTATTACTCTCGAAAAGCTTCCAACTGGATCTTAGAAGACTCTTGTCCAGATTATATGCTGAAAGCAGAGGAGTGTTTGAAACGGGAGAAAGATAGAGTTTCTAACTACTTGCACTCTAGTAGTGAGCCAAAGCTGCTTGAGAAAGTTCAACATGAGCTGTTGTCTGTTTATGCAACCCAACTACTTGAGAAAGAGCACTCAGGATGCCATGCATTGCTTCGAGATGACAAGGTGGATGATCTGTCTAGAATGTTCAGGCTATTTTCTAAGATACCTCGAGGTTTGGATCCTGTTTCTCAAATATTCAAGCAGCATGTTACTGCTGAAGGAACAGCCTTAGTCAAACAGGCAGAAGATGCAGCAAGCAACAAGAAGGCAGAGAAAAAGGATGTGGTTGGTTTGCAGGAACAGGTTTTTGTTAGAAAAGTGATTGAGCTGCATGATAAGTACATAGCATACGTCAATGAATGTTTCCAAAACCATACTCTTTTCCATAAGGCCTTAAAGGAGGCTTTTGAGATCTTTTGCAACAAGGGTGTTGCTGGAAGCTCTAGTGCGGAACTACTTGCCACGTTTTGTGATAACATTCTTAAGAAAGGTGGGAGTGAAAAGTTGAGTGATGAAGCCATTGAGGAGACACTTGAGAAGGTAGTAAAGCTGCTGGCTTATATTAGTGACAAAGACCTGTTCGCGGAGTTCTATAGGAAAAAGCTTGCTCGACGTCTTCTTTTTGACAAGAGTGCTAATGATGACCATGAGAGATGTATTTTGACAAAACTAAAGCAACAATGTGGTGGTCAGTTTACCTCAAAGATGGATGGAATGGTTACTGATTTGACATTGGCCAAGGACAACCAAGTTGGCTTTGAGGAGTATCTGAGAAATAATCCACAGGCAAATCCTGGTATTGATTTGACAGTTACTGTCTTGACCACTGGCTTCTGGCCAAGCTACAAGACTTTTGACCTCAACCTACCCCCAGAGATGGTTAAGTGCGTAGAACTTTTCAGGGAATTCTATCAAACGAAGACAAAACACAGAAAGCTTACGTGGATGTACTCACTGGGTACTTGTAACATCATTGGGAAATTTGATCCAAAAACCATAGAGCTTATTGTGACGACTTATCAGGCTTCAGCCCTGCTGTTATTCAATACCTCAGATAGACTGAGTTACTCGGAGATTATGACTCAGTTAAACTTGACTGATGATGATGTTGTCAGACTACTCCATTCATTGTCATGTGCCAAGTATAAGATCCTTAACAAGGAACCAAACACAAAAACTATCTCTCCCACTGATTACTTTGAGTTTAACGATAAGTTTACTGACAAAATGAGGAGGATCAAGATCCCACTTCCACCGGTGGATGAGAAGAAGAAAGTAATTGAAGATGTTGACAAGGACAGAAGGTATGCCATCGATGCATCAATTGTGCGTATTATGAAGAGCCGTAAAGTTTTGGGTCATCAGCAGTTGGTTATGGAGTGTGTAGAGCAGCTAGGTCGCATGTTCAAGCCCGATTTCAAAGCAATAAAAAAGAGGATCGAAGATCTAATCACAAGAGACTACTTAGAACGGGACAAAGACAACCCCAATTTGTTTAGGTACTTGGCATGA

Protein Analysis

745

Amino Acids

86.94

Weight (kDa)

6.81

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cullin PF00888 23 - 490 2.1e-136 Cullin alpha solenoid domain
Cullin_AB PF26557 514 - 647 1.7e-43 Cullin alpha+beta domain
Cullin_Nedd8 PF10557 674 - 736 9.3e-27 Cullin protein neddylation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1339
AbsI CCTCGAGG 1 cut(s) 891
AccBSI CCGCTC 1 cut(s) 16
AccI GTMKAC 1 cut(s) 429
AccII CGCG 1 cut(s) 1307
AciI CCGC 4 cut(s) 16, 104, 1172, 1307
AcoI YGGCCR 2 cut(s) 1458, 1559
AcsI RAATTY 2 cut(s) 1628, 1703
AcuI CTGAAG 3 cut(s) 95, 960, 1734
AcyI GRCGYC 1 cut(s) 1336
AfaI GTAC 7 cut(s) 160, 206, 227, 1064, 1673, 1684, 2225
AfiI CCNNNNNNNGG 4 cut(s) 424, 1306, 1600, 1882
AflII CTTAAG 1 cut(s) 1205
AgeI ACCGGT 1 cut(s) 1978
AjnI CCWGG 1 cut(s) 1516
Alw21I GWGCWC 2 cut(s) 514, 813
Alw26I GTCTC 2 cut(s) 1244, 2175
AlwNI CAGNNNCTG 1 cut(s) 1538
Ama87I CYCGRG 2 cut(s) 98, 891
AoxI GGCC 3 cut(s) 1113, 1458, 1559
ApeKI GCWGC 8 cut(s) 190, 611, 748, 925, 974, 1051, 1273, 2113
ApoI RAATTY 2 cut(s) 1628, 1703
AsiGI ACCGGT 1 cut(s) 1978
Asp700I GAANNNNTTC 1 cut(s) 631
AspS9I GGNCC 1 cut(s) 303
AvaI CYCGRG 2 cut(s) 98, 891
AvaII GGWCC 1 cut(s) 303
BalI TGGCCA 2 cut(s) 1460, 1561
BamHI GGATCC 1 cut(s) 901
BanII GRGCYC 1 cut(s) 514
BbsI GAAGAC 4 cut(s) 26, 657, 1331, 1649
Bbv12I GWGCWC 2 cut(s) 514, 813
BbvI GCAGC 8 cut(s) 202, 598, 735, 937, 986, 1038, 1260, 2125
BccI CCATC 6 cut(s) 36, 256, 1423, 1427, 1594, 2042
BceAI ACGGC 1 cut(s) 2052
BcgI CGANNNNNNTGC 4 cut(s) 226, 260, 2102, 2136
BciT130I CCWGG 1 cut(s) 1518
BclI TGATCA 1 cut(s) 478
BcoDI GTCTC 2 cut(s) 1244, 2175
BfaI CTAG 5 cut(s) 86, 732, 861, 1167, 2117
BfmI CTRYAG 1 cut(s) 1315
BfrI CTTAAG 1 cut(s) 1205
BglII AGATCT 3 cut(s) 421, 1134, 2167
BisI GCNGC 9 cut(s) 104, 191, 612, 749, 926, 975, 1052, 1274, 2114
BlsI GCNGC 9 cut(s) 105, 192, 613, 750, 927, 976, 1053, 1275, 2115
Bme1390I CCNGG 1 cut(s) 1518
Bme18I GGWCC 1 cut(s) 303
BmeT110I CYCGRG 2 cut(s) 98, 891
BmgT120I GGNCC 1 cut(s) 303
BmiI GGNNCC 2 cut(s) 903, 1887
BmrFI CCNGG 1 cut(s) 1518
BmrI ACTGGG 1 cut(s) 1688
BmsI GCATC 5 cut(s) 120, 809, 961, 2029, 2051
BmuI ACTGGG 1 cut(s) 1688
BoxI GACNNNNGTC 1 cut(s) 657
BpiI GAAGAC 4 cut(s) 26, 657, 1331, 1649
BpuEI CTTGAG 3 cut(s) 773, 821, 1277
Bsa29I ATCGAT 1 cut(s) 2037
BsaAI YACGTR 1 cut(s) 1665
BsaBI GATNNNNATC 1 cut(s) 1964
BsaHI GRCGYC 1 cut(s) 1336
BsaJI CCNNGG 1 cut(s) 1461
BsaWI WCCGGW 1 cut(s) 1978
BsaXI ACNNNNNCTCC 2 cut(s) 1891, 1921
Bsc4I CCNNNNNNNGG 4 cut(s) 424, 1306, 1600, 1882
Bse118I RCCGGY 1 cut(s) 1978
Bse1I ACTGG 3 cut(s) 644, 1555, 1683
Bse3DI GCAATG 1 cut(s) 827
Bse8I GATNNNNATC 1 cut(s) 1964
BseBI CCWGG 1 cut(s) 1518
BseCI ATCGAT 1 cut(s) 2037
BseDI CCNNGG 1 cut(s) 1461
BseGI GGATG 7 cut(s) 47, 824, 856, 1009, 1438, 1674, 1990
BseJI GATNNNNATC 1 cut(s) 1964
BseLI CCNNNNNNNGG 4 cut(s) 424, 1306, 1600, 1882
BseMI GCAATG 1 cut(s) 827
BseMII CTCAG 6 cut(s) 108, 828, 1484, 1775, 1788, 1820
BseNI ACTGG 3 cut(s) 644, 1555, 1683
BseRI GAGGAG 4 cut(s) 698, 1262, 1499, 1969
BseXI GCAGC 8 cut(s) 202, 598, 735, 937, 986, 1038, 1260, 2125
Bsh1236I CGCG 1 cut(s) 1307
BshFI GGCC 3 cut(s) 1115, 1460, 1561
BshTI ACCGGT 1 cut(s) 1978
BshVI ATCGAT 1 cut(s) 2037
BsiHKAI GWGCWC 2 cut(s) 514, 813
BsiHKCI CYCGRG 2 cut(s) 98, 891
BsiSI CCGG 1 cut(s) 1979
BslFI GGGAC 2 cut(s) 570, 2210
BslI CCNNNNNNNGG 4 cut(s) 424, 1306, 1600, 1882
BsmAI GTCTC 2 cut(s) 1244, 2175
BsmFI GGGAC 2 cut(s) 570, 2210
BsnI GGCC 3 cut(s) 1115, 1460, 1561
BsoBI CYCGRG 2 cut(s) 98, 891
Bsp1286I GDGCHC 2 cut(s) 514, 813
BspACI CCGC 4 cut(s) 16, 104, 1172, 1307
BspANI GGCC 3 cut(s) 1115, 1460, 1561
BspCNI CTCAG 6 cut(s) 109, 827, 1485, 1776, 1787, 1819
BspDI ATCGAT 1 cut(s) 2037
BspFNI CGCG 1 cut(s) 1307
BspLI GGNNCC 2 cut(s) 903, 1887
BspQI GCTCTTC 1 cut(s) 2057
BspTI CTTAAG 1 cut(s) 1205
BsrBI CCGCTC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 827
BsrFI RCCGGY 1 cut(s) 1978
BsrI ACTGG 3 cut(s) 644, 1555, 1683
BssAI RCCGGY 1 cut(s) 1978
BssECI CCNNGG 1 cut(s) 1461
BssNI GRCGYC 1 cut(s) 1336
BssT1I CCWWGG 1 cut(s) 1461
Bst2UI CCWGG 1 cut(s) 1518
Bst4CI ACNGT 3 cut(s) 241, 1534, 1540
Bst6I CTCTTC 2 cut(s) 216, 2057
BstACI GRCGYC 1 cut(s) 1336
BstAFI CTTAAG 1 cut(s) 1205
BstAPI GCANNNNNTGC 1 cut(s) 971
BstBAI YACGTR 1 cut(s) 1665
BstC8I GCNNGC 4 cut(s) 412, 979, 1278, 1329
BstENI CCTNNNNNAGG 1 cut(s) 1880
BstF5I GGATG 7 cut(s) 47, 824, 856, 1009, 1438, 1674, 1990
BstFNI CGCG 1 cut(s) 1307
BstMAI GTCTC 2 cut(s) 1244, 2175
BstMWI GCNNNNNNNGC 6 cut(s) 103, 253, 262, 748, 971, 2039
BstNI CCWGG 1 cut(s) 1518
BstNSI RCATGY 3 cut(s) 598, 932, 2128
BstPAI GACNNNNGTC 1 cut(s) 657
BstSCI CCNGG 1 cut(s) 1516
BstSFI CTRYAG 1 cut(s) 1315
BstUI CGCG 1 cut(s) 1307
BstV1I GCAGC 8 cut(s) 202, 598, 735, 937, 986, 1038, 1260, 2125
BstV2I GAAGAC 4 cut(s) 26, 657, 1331, 1649
BstX2I RGATCY 7 cut(s) 421, 642, 901, 1134, 1872, 1965, 2167
BstYI RGATCY 7 cut(s) 421, 642, 901, 1134, 1872, 1965, 2167
Bsu15I ATCGAT 1 cut(s) 2037
BsuRI GGCC 3 cut(s) 1115, 1460, 1561
BsuTUI ATCGAT 1 cut(s) 2037
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 7 cut(s) 47, 824, 856, 1009, 1438, 1674, 1990
BtsI GCAGTG 1 cut(s) 606
BtsIMutI CAGTG 4 cut(s) 606, 1548, 1676, 1911
Cac8I GCNNGC 4 cut(s) 412, 979, 1278, 1329
CaiI CAGNNNCTG 1 cut(s) 1538
Cfr10I RCCGGY 1 cut(s) 1978
Cfr13I GGNCC 1 cut(s) 303
ClaI ATCGAT 1 cut(s) 2037
Csp6I GTAC 7 cut(s) 159, 205, 226, 1063, 1672, 1683, 2224
CspAI ACCGGT 1 cut(s) 1978
CviQI GTAC 7 cut(s) 159, 205, 226, 1063, 1672, 1683, 2224
EaeI YGGCCR 2 cut(s) 1458, 1559
Eam1104I CTCTTC 2 cut(s) 216, 2057
EarI CTCTTC 2 cut(s) 216, 2057
Ecl136II GAGCTC 1 cut(s) 512
Eco130I CCWWGG 1 cut(s) 1461
Eco147I AGGCCT 1 cut(s) 1115
Eco24I GRGCYC 1 cut(s) 514
Eco47I GGWCC 1 cut(s) 303
Eco53kI GAGCTC 1 cut(s) 512
Eco57I CTGAAG 3 cut(s) 95, 960, 1734
Eco88I CYCGRG 2 cut(s) 98, 891
EcoICRI GAGCTC 1 cut(s) 512
EcoNI CCTNNNNNAGG 1 cut(s) 1880
EcoRI GAATTC 1 cut(s) 1628
EcoRII CCWGG 1 cut(s) 1516
EcoT14I CCWWGG 1 cut(s) 1461
EcoT22I ATGCAT 2 cut(s) 829, 2044
EcoT38I GRGCYC 1 cut(s) 514
ErhI CCWWGG 1 cut(s) 1461
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 2 cut(s) 570, 2210
FbaI TGATCA 1 cut(s) 478
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 9 cut(s) 104, 191, 612, 749, 926, 975, 1052, 1274, 2114
FokI GGATG 7 cut(s) 54, 831, 863, 1016, 1445, 1681, 1997
FriOI GRGCYC 1 cut(s) 514
Fsp4HI GCNGC 9 cut(s) 104, 191, 612, 749, 926, 975, 1052, 1274, 2114
FspBI CTAG 5 cut(s) 86, 732, 861, 1167, 2117
GluI GCNGC 9 cut(s) 104, 191, 612, 749, 926, 975, 1052, 1274, 2114
HaeIII GGCC 3 cut(s) 1115, 1460, 1561
HapII CCGG 1 cut(s) 1979
Hin1I GRCGYC 1 cut(s) 1336
HincII GTYRAC 1 cut(s) 2014
HindII GTYRAC 1 cut(s) 2014
HindIII AAGCTT 3 cut(s) 630, 1325, 1658
HinfI GANTC 3 cut(s) 212, 653, 1804
HpaII CCGG 1 cut(s) 1979
Hpy166II GTNNAC 6 cut(s) 159, 303, 430, 1419, 1941, 2014
Hpy188I TCNGA 7 cut(s) 118, 419, 474, 1494, 1777, 1795, 1838
Hpy8I GTNNAC 6 cut(s) 159, 303, 430, 1419, 1941, 2014
Hpy99I CGWCG 2 cut(s) 241, 1338
HpyAV CCTTC 7 cut(s) 52, 83, 485, 935, 982, 1255, 2019
HpyCH4III ACNGT 3 cut(s) 241, 1534, 1540
HpyCH4IV ACGT 5 cut(s) 487, 1074, 1187, 1336, 1664
HpyCH4V TGCA 9 cut(s) 55, 727, 788, 827, 974, 1018, 1054, 1143, 2042
HpyF10VI GCNNNNNNNGC 6 cut(s) 103, 253, 262, 748, 971, 2039
HpySE526I ACGT 5 cut(s) 487, 1074, 1187, 1336, 1664
Hsp92I GRCGYC 1 cut(s) 1336
Ksp22I TGATCA 1 cut(s) 478
LguI GCTCTTC 1 cut(s) 2057
Lsp1109I GCAGC 8 cut(s) 202, 598, 735, 937, 986, 1038, 1260, 2125
LweI GCATC 5 cut(s) 120, 809, 961, 2029, 2051
MaeI CTAG 5 cut(s) 86, 732, 861, 1167, 2117
MaeII ACGT 5 cut(s) 487, 1074, 1187, 1336, 1664
MaeIII GTNAC 7 cut(s) 931, 1289, 1441, 1534, 1688, 1732, 1787
MbiI CCGCTC 1 cut(s) 16
MfeI CAATTG 1 cut(s) 2046
MflI RGATCY 7 cut(s) 421, 642, 901, 1134, 1872, 1965, 2167
MhlI GDGCHC 2 cut(s) 514, 813
MlsI TGGCCA 2 cut(s) 1460, 1561
MluCI AATT 7 cut(s) 315, 437, 1628, 1703, 2001, 2046, 2212
MluNI TGGCCA 2 cut(s) 1460, 1561
MlyI GAGTC 2 cut(s) 647, 1798
MmeI TCCRAC 2 cut(s) 382, 660
Mox20I TGGCCA 2 cut(s) 1460, 1561
Mph1103I ATGCAT 2 cut(s) 829, 2044
MroXI GAANNNNTTC 1 cut(s) 631
MscI TGGCCA 2 cut(s) 1460, 1561
MseI TTAA 7 cut(s) 600, 1118, 1206, 1605, 1811, 1878, 1929
MslI CAYNNNNRTG 1 cut(s) 1855
Msp20I TGGCCA 2 cut(s) 1460, 1561
MspCI CTTAAG 1 cut(s) 1205
MspI CCGG 1 cut(s) 1979
MspR9I CCNGG 1 cut(s) 1518
MunI CAATTG 1 cut(s) 2046
MvaI CCWGG 1 cut(s) 1518
MvnI CGCG 1 cut(s) 1307
MwoI GCNNNNNNNGC 6 cut(s) 103, 253, 262, 748, 971, 2039
NlaIV GGNNCC 2 cut(s) 903, 1887
NmeAIII GCCGAG 1 cut(s) 352
NmuCI GTSAC 2 cut(s) 1289, 1732
NsiI ATGCAT 2 cut(s) 829, 2044
NspI RCATGY 3 cut(s) 598, 932, 2128
PaeR7I CTCGAG 1 cut(s) 891
PceI AGGCCT 1 cut(s) 1115
PciSI GCTCTTC 1 cut(s) 2057
PdmI GAANNNNTTC 1 cut(s) 631
PfeI GAWTC 1 cut(s) 212
PinAI ACCGGT 1 cut(s) 1978
PkrI GCNGC 9 cut(s) 105, 192, 613, 750, 927, 976, 1053, 1275, 2115
PleI GAGTC 2 cut(s) 647, 1798
PpsI GAGTC 2 cut(s) 647, 1798
Ppu21I YACGTR 1 cut(s) 1665
PshAI GACNNNNGTC 1 cut(s) 657
Psp124BI GAGCTC 1 cut(s) 514
Psp6I CCWGG 1 cut(s) 1516
PspGI CCWGG 1 cut(s) 1516
PspN4I GGNNCC 2 cut(s) 903, 1887
PspPI GGNCC 1 cut(s) 303
PspXI VCTCGAGB 1 cut(s) 891
PstNI CAGNNNCTG 1 cut(s) 1538
PsuI RGATCY 7 cut(s) 421, 642, 901, 1134, 1872, 1965, 2167
RsaI GTAC 7 cut(s) 160, 206, 227, 1064, 1673, 1684, 2225
RsaNI GTAC 7 cut(s) 159, 205, 226, 1063, 1672, 1683, 2224
RseI CAYNNNNRTG 1 cut(s) 1855
SacI GAGCTC 1 cut(s) 514
SapI GCTCTTC 1 cut(s) 2057
SaqAI TTAA 7 cut(s) 600, 1118, 1206, 1605, 1811, 1878, 1929
SatI GCNGC 9 cut(s) 104, 191, 612, 749, 926, 975, 1052, 1274, 2114
Sau96I GGNCC 1 cut(s) 303
SchI GAGTC 2 cut(s) 647, 1798
ScrFI CCNGG 1 cut(s) 1518
SduI GDGCHC 2 cut(s) 514, 813
SfaNI GCATC 5 cut(s) 120, 809, 961, 2029, 2051
SfcI CTRYAG 1 cut(s) 1315
Sfr274I CTCGAG 1 cut(s) 891
SgrAI CRCCGGYG 1 cut(s) 1978
SinI GGWCC 1 cut(s) 303
SlaI CTCGAG 1 cut(s) 891
SmiMI CAYNNNNRTG 1 cut(s) 1855
SmlI CTYRAG 5 cut(s) 752, 800, 891, 1205, 1256
SmoI CTYRAG 5 cut(s) 752, 800, 891, 1205, 1256
Sse9I AATT 7 cut(s) 315, 437, 1628, 1703, 2001, 2046, 2212
SseBI AGGCCT 1 cut(s) 1115
SsiI CCGC 4 cut(s) 16, 104, 1172, 1307
SspI AATATT 1 cut(s) 918
SspMI CTAG 5 cut(s) 86, 732, 861, 1167, 2117
SstI GAGCTC 1 cut(s) 514
StuI AGGCCT 1 cut(s) 1115
StyD4I CCNGG 1 cut(s) 1516
StyI CCWWGG 1 cut(s) 1461
TaaI ACNGT 3 cut(s) 241, 1534, 1540
TaiI ACGT 5 cut(s) 490, 1077, 1190, 1339, 1667
TaqI TCGA 7 cut(s) 236, 625, 835, 892, 1333, 2037, 2163
TaqII GACCGA 1 cut(s) 522
TasI AATT 7 cut(s) 315, 437, 1628, 1703, 2001, 2046, 2212
TatI WGTACW 5 cut(s) 158, 204, 225, 1062, 1671
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 7 cut(s) 600, 1118, 1206, 1605, 1811, 1878, 1929
Tru9I TTAA 7 cut(s) 600, 1118, 1206, 1605, 1811, 1878, 1929
TscAI CASTG 4 cut(s) 613, 1555, 1683, 1918
TseFI GTSAC 2 cut(s) 1289, 1732
TseI GCWGC 8 cut(s) 190, 611, 748, 925, 974, 1051, 1273, 2113
Tsp45I GTSAC 2 cut(s) 1289, 1732
TspRI CASTG 4 cut(s) 613, 1555, 1683, 1918
Vha464I CTTAAG 1 cut(s) 1205
VpaK11BI GGWCC 1 cut(s) 303
XagI CCTNNNNNAGG 1 cut(s) 1880
XapI RAATTY 2 cut(s) 1628, 1703
XbaI TCTAGA 2 cut(s) 85, 860
XceI RCATGY 3 cut(s) 598, 932, 2128
XhoI CTCGAG 1 cut(s) 891
XmiI GTMKAC 1 cut(s) 429
XmnI GAANNNNTTC 1 cut(s) 631
XspI CTAG 5 cut(s) 86, 732, 861, 1167, 2117
ZraI GACGTC 1 cut(s) 1337
Zsp2I ATGCAT 2 cut(s) 829, 2044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.