Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000162

Physical Location & Seq

Genomic Coordinates Forward (+)

7713933 .. 7714774

Gene Structure 842 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1059100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGAAAGAAGAGAGCAGTTAGGTAGAATATGGAGCTATATGCAGGCAGGGATCACAAAGCTAAAGAGAATTATACAAGGATTACCGGAGCCTCAGTTCAGCTCGGAAGATTATATGATGCTTTACGCAACTGTCTACAACATGTGTACTCAAAACCCGCCTTATGATTATTCTCAGCAGCTTTATGACAAATATCGGGAGACATTCCAGAACTACATTACTTCGACAGTCTTGCCCTCCCTTAAAGAGAAGCGTGGCGAGTTTATGTTGCAGGAGTTTGTCAAAAGTTGGACAAATCATAAAGTTATGGTTAGATGGCTGTCGCGCTTCTTTCATTATCTTGATCGCTACTTCATCGCTGACAGATCACTCGCGAACCTAGATGAAGTTGGACTTAACAGCTTCCGTGATTTCGTCTATCGAGAGACCAAAGTTGATGCCAGAAAAATTGACAGAAACCTACTGAAGAGTGTGATCAATATATTTGTTGAAATTGGCATCGGACAAATGGATGCTTATGAAGAGGACTTCGAAGCGCATATGCTAACGAACACTGGAAAATACTATTCTCGTAAAGCATCAAGTTGGGTTTTGGAGGATCCTAATATGAATTACATGTTGAAGGCCGAGGAATGCTTACGAAGGGAGAGGGCTAGAGTTTCTCATTACCTGCACTCAAGCAGTGAGCAGAAGCTAGTGGAGAAAGTCGAACATGAGCTGCTGGCGGTCTACACAACTCAATTGAAGCATTCAGATTCTGGATCTGGTGCTTTGCTAGAGATGACAATGTGGAGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000228 GO:0000793 GO:0000794 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009524 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010154 GO:0015630 GO:0019899 GO:0022414 GO:0023052 GO:0031461 GO:0031625 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0099402 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Cullin Cullin_Nedd8

Protein Analysis

267

Amino Acids

31.73

Weight (kDa)

7.07

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin	PF00888	20 - 251	9e-45	Cullin alpha solenoid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca	FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica	MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica	Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis	pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis	RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata	RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora	Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa	Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha	Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana	Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	678
AccI	GTMKAC	2 cut(s)	135, 729
AccII	CGCG	2 cut(s)	325, 374
AciI	CCGC	2 cut(s)	158, 725
AclWI	GGATC	4 cut(s)	59, 593, 606, 769
AcuI	CTGAAG	1 cut(s)	485
AfaI	GTAC	1 cut(s)	148
AflIII	ACRYGT	2 cut(s)	141, 615
AgsI	TTSAA	3 cut(s)	491, 622, 745
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	7 cut(s)	36, 61, 102, 181, 402, 694, 718
AluI	AGCT	7 cut(s)	36, 61, 102, 181, 402, 694, 718
Alw26I	GTCTC	2 cut(s)	194, 419
AlwI	GGATC	4 cut(s)	59, 593, 606, 769
AlwNI	CAGNNNCTG	1 cut(s)	758
AoxI	GGCC	1 cut(s)	624
ApeKI	GCWGC	2 cut(s)	178, 718
AspLEI	GCGC	2 cut(s)	327, 538
AsuII	TTCGAA	1 cut(s)	531
BamHI	GGATCC	1 cut(s)	598
BbvI	GCAGC	2 cut(s)	190, 705
BccI	CCATC	1 cut(s)	309
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BclI	TGATCA	1 cut(s)	474
BcoDI	GTCTC	2 cut(s)	194, 419
BfaI	CTAG	4 cut(s)	380, 654, 695, 776
BfuAI	ACCTGC	1 cut(s)	678
BisI	GCNGC	2 cut(s)	179, 719
BlsI	GCNGC	2 cut(s)	180, 720
BmiI	GGNNCC	2 cut(s)	90, 600
BmsI	GCATC	5 cut(s)	108, 427, 502, 507, 587
Bpu14I	TTCGAA	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	661
BsaI	GGTCTC	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	627
BsaWI	WCCGGW	1 cut(s)	85
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse1I	ACTGG	1 cut(s)	559
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	1 cut(s)	517
BseMII	CTCAG	2 cut(s)	107, 188
BseNI	ACTGG	1 cut(s)	559
BseXI	GCAGC	2 cut(s)	190, 705
BsgI	GTGCAG	1 cut(s)	656
Bsh1236I	CGCG	2 cut(s)	325, 374
BshFI	GGCC	1 cut(s)	626
BsiSI	CCGG	1 cut(s)	86
BsmAI	GTCTC	2 cut(s)	194, 419
BsmI	GAATGC	2 cut(s)	638, 748
BsnI	GGCC	1 cut(s)	626
Bso31I	GGTCTC	1 cut(s)	419
Bsp119I	TTCGAA	1 cut(s)	531
Bsp143I	GATC	6 cut(s)	51, 343, 365, 474, 598, 761
Bsp68I	TCGCGA	1 cut(s)	374
BspACI	CCGC	2 cut(s)	158, 725
BspANI	GGCC	1 cut(s)	626
BspCNI	CTCAG	2 cut(s)	106, 187
BspFNI	CGCG	2 cut(s)	325, 374
BspLI	GGNNCC	2 cut(s)	90, 600
BspMI	ACCTGC	1 cut(s)	678
BspPI	GGATC	4 cut(s)	59, 593, 606, 769
BspT104I	TTCGAA	1 cut(s)	531
BspTNI	GGTCTC	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	559
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	6 cut(s)	51, 343, 365, 474, 598, 761
Bst4CI	ACNGT	2 cut(s)	133, 229
Bst6I	CTCTTC	3 cut(s)	4, 461, 516
BstBI	TTCGAA	1 cut(s)	531
BstC8I	GCNNGC	2 cut(s)	45, 723
BstDEI	CTNAG	2 cut(s)	93, 174
BstF5I	GGATG	1 cut(s)	517
BstFNI	CGCG	2 cut(s)	325, 374
BstHHI	GCGC	2 cut(s)	327, 538
BstKTI	GATC	6 cut(s)	54, 346, 368, 477, 601, 764
BstMAI	GTCTC	2 cut(s)	194, 419
BstMBI	GATC	6 cut(s)	51, 343, 365, 474, 598, 761
BstNSI	RCATGY	2 cut(s)	145, 619
BstUI	CGCG	2 cut(s)	325, 374
BstV1I	GCAGC	2 cut(s)	190, 705
BstX2I	RGATCY	2 cut(s)	598, 761
BstYI	RGATCY	2 cut(s)	598, 761
BsuRI	GGCC	1 cut(s)	626
BtgZI	GCGATG	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	517
BtsI	GCAGTG	1 cut(s)	688
BtsIMutI	CAGTG	2 cut(s)	552, 688
BtuMI	TCGCGA	1 cut(s)	374
BveI	ACCTGC	1 cut(s)	678
Cac8I	GCNNGC	2 cut(s)	45, 723
CaiI	CAGNNNCTG	1 cut(s)	758
CfoI	GCGC	2 cut(s)	327, 538
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	3 cut(s)	142, 616, 713
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	2 cut(s)	93, 174
DpnI	GATC	6 cut(s)	53, 345, 367, 476, 600, 763
DpnII	GATC	6 cut(s)	51, 343, 365, 474, 598, 761
Eam1104I	CTCTTC	3 cut(s)	4, 461, 516
EarI	CTCTTC	3 cut(s)	4, 461, 516
Eco31I	GGTCTC	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	485
FaeI	CATG	3 cut(s)	145, 619, 716
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FatI	CATG	3 cut(s)	141, 615, 712
FauI	CCCGC	1 cut(s)	165
FauNDI	CATATG	1 cut(s)	540
FbaI	TGATCA	1 cut(s)	474
FblI	GTMKAC	2 cut(s)	135, 729
Fnu4HI	GCNGC	2 cut(s)	179, 719
FokI	GGATG	1 cut(s)	524
Fsp4HI	GCNGC	2 cut(s)	179, 719
FspBI	CTAG	4 cut(s)	380, 654, 695, 776
GlaI	GCGC	2 cut(s)	326, 537
GluI	GCNGC	2 cut(s)	179, 719
HaeIII	GGCC	1 cut(s)	626
HapII	CCGG	1 cut(s)	86
HhaI	GCGC	2 cut(s)	327, 538
Hin1II	CATG	3 cut(s)	145, 619, 716
Hin6I	GCGC	2 cut(s)	325, 536
HinP1I	GCGC	2 cut(s)	325, 536
HinfI	GANTC	1 cut(s)	755
HpaII	CCGG	1 cut(s)	86
Hpy166II	GTNNAC	3 cut(s)	136, 147, 730
Hpy188I	TCNGA	4 cut(s)	106, 503, 754, 800
Hpy188III	TCNNGA	6 cut(s)	197, 208, 341, 373, 422, 759
Hpy8I	GTNNAC	3 cut(s)	136, 147, 730
HpyAV	CCTTC	2 cut(s)	616, 636
HpyCH4III	ACNGT	2 cut(s)	133, 229
HpyCH4V	TGCA	3 cut(s)	43, 271, 673
HpyF3I	CTNAG	2 cut(s)	93, 174
Hsp92II	CATG	3 cut(s)	145, 619, 716
HspAI	GCGC	2 cut(s)	325, 536
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	6 cut(s)	51, 343, 365, 474, 598, 761
LmnI	GCTCC	2 cut(s)	33, 88
Lsp1109I	GCAGC	2 cut(s)	190, 705
LweI	GCATC	5 cut(s)	108, 427, 502, 507, 587
MaeI	CTAG	4 cut(s)	380, 654, 695, 776
MalI	GATC	6 cut(s)	53, 345, 367, 476, 600, 763
MboI	GATC	6 cut(s)	51, 343, 365, 474, 598, 761
MboII	GAAGA	4 cut(s)	21, 119, 478, 533
MfeI	CAATTG	1 cut(s)	740
MflI	RGATCY	2 cut(s)	598, 761
MluCI	AATT	5 cut(s)	69, 447, 492, 610, 740
MmeI	TCCRAC	2 cut(s)	269, 370
MnlI	CCTC	7 cut(s)	102, 247, 517, 589, 622, 642, 786
MseI	TTAA	2 cut(s)	243, 396
MspI	CCGG	1 cut(s)	86
MunI	CAATTG	1 cut(s)	740
Mva1269I	GAATGC	2 cut(s)	638, 748
MvnI	CGCG	2 cut(s)	325, 374
NdeI	CATATG	1 cut(s)	540
NdeII	GATC	6 cut(s)	51, 343, 365, 474, 598, 761
NlaIII	CATG	3 cut(s)	145, 619, 716
NlaIV	GGNNCC	2 cut(s)	90, 600
NmeAIII	GCCGAG	1 cut(s)	652
NruI	TCGCGA	1 cut(s)	374
NspI	RCATGY	2 cut(s)	145, 619
NspV	TTCGAA	1 cut(s)	531
PciI	ACATGT	2 cut(s)	141, 615
PctI	GAATGC	2 cut(s)	638, 748
PfeI	GAWTC	1 cut(s)	755
PkrI	GCNGC	2 cut(s)	180, 720
PscI	ACATGT	2 cut(s)	141, 615
PspN4I	GGNNCC	2 cut(s)	90, 600
PstNI	CAGNNNCTG	1 cut(s)	758
PsuI	RGATCY	2 cut(s)	598, 761
RruI	TCGCGA	1 cut(s)	374
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SaqAI	TTAA	2 cut(s)	243, 396
SatI	GCNGC	2 cut(s)	179, 719
Sau3AI	GATC	6 cut(s)	51, 343, 365, 474, 598, 761
SfaNI	GCATC	5 cut(s)	108, 427, 502, 507, 587
SfuI	TTCGAA	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	676
SmoI	CTYRAG	1 cut(s)	676
Sse9I	AATT	5 cut(s)	69, 447, 492, 610, 740
SsiI	CCGC	2 cut(s)	158, 725
SspMI	CTAG	4 cut(s)	380, 654, 695, 776
TaaI	ACNGT	2 cut(s)	133, 229
TaqI	TCGA	4 cut(s)	224, 421, 531, 708
TasI	AATT	5 cut(s)	69, 447, 492, 610, 740
TatI	WGTACW	1 cut(s)	146
TfiI	GAWTC	1 cut(s)	755
Tru1I	TTAA	2 cut(s)	243, 396
Tru9I	TTAA	2 cut(s)	243, 396
TscAI	CASTG	2 cut(s)	559, 688
TseI	GCWGC	2 cut(s)	178, 718
TspDTI	ATGAA	5 cut(s)	323, 343, 399, 534, 623
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	2 cut(s)	559, 688
XceI	RCATGY	2 cut(s)	145, 619
XmiI	GTMKAC	2 cut(s)	135, 729
XspI	CTAG	4 cut(s)	380, 654, 695, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.