Rh3CG189200

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
16648895 .. 16650055
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG189200.1

Sequence Viewer

Length: 276 bp
ATGGGGTGTGTTGAGCTATTGAAGGGCTTGTTCAAGCCGGACATCAAAGCAATTAAGAAGCGAATTGAAGATCTCATCACCCGTGAATACCTGGAGATGGATAAGGAGAATCCTAACACGTTTAGAAATTTATGCTCATGTCGTTCCACTTTCGATCTTTCGTTACATGCATTGGTGACGGAAGAATTTGATAATGGATCGAGGAGGAAGAATGAAAGAGGCGTTCGCATCTCAACTTGGGCTCGAGTCTTTGACTTCGTGTACACTTACACTTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

91

Amino Acids

10.74

Weight (kDa)

8.5

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cullin_Nedd8 PF10557 3 - 37 5.2e-09 Cullin protein neddylation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 205
AcsI RAATTY 2 cut(s) 127, 185
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 97
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 3 cut(s) 22, 34, 68
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
AlwI GGATC 1 cut(s) 205
Ama87I CYCGRG 1 cut(s) 243
ApoI RAATTY 2 cut(s) 127, 185
AsuHPI GGTGA 2 cut(s) 70, 187
AvaI CYCGRG 1 cut(s) 243
BanII GRGCYC 1 cut(s) 244
BccI CCATC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 92
BglII AGATCT 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 92
BmeT110I CYCGRG 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 113
Bsc4I CCNNNNNNNGG 1 cut(s) 97
BseBI CCWGG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 243
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 97
BsoBI CYCGRG 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 244
Bsp1407I TGTACA 1 cut(s) 261
Bsp143I GATC 3 cut(s) 70, 154, 197
BspPI GGATC 1 cut(s) 205
BsrGI TGTACA 1 cut(s) 261
BssMI GATC 3 cut(s) 70, 154, 197
Bst2UI CCWGG 1 cut(s) 92
BstAUI TGTACA 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 273
BstKTI GATC 3 cut(s) 73, 157, 200
BstMBI GATC 3 cut(s) 70, 154, 197
BstNI CCWGG 1 cut(s) 92
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
Csp6I GTAC 1 cut(s) 262
CviAII CATG 2 cut(s) 138, 167
CviJI RGCY 4 cut(s) 16, 27, 37, 242
CviKI_1 RGCY 4 cut(s) 16, 27, 37, 242
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 1 cut(s) 273
DpnI GATC 3 cut(s) 72, 156, 199
DpnII GATC 3 cut(s) 70, 154, 197
Eco24I GRGCYC 1 cut(s) 244
Eco88I CYCGRG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 90
EcoT22I ATGCAT 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 244
FaeI CATG 2 cut(s) 141, 170
FaiI YATR 3 cut(s) 133, 139, 168
FatI CATG 2 cut(s) 137, 166
FriOI GRGCYC 1 cut(s) 244
GsuI CTGGAG 1 cut(s) 113
HapII CCGG 1 cut(s) 38
Hin1II CATG 2 cut(s) 141, 170
HinfI GANTC 2 cut(s) 109, 246
HpaII CCGG 1 cut(s) 38
HphI GGTGA 2 cut(s) 70, 187
Hpy166II GTNNAC 2 cut(s) 262, 264
Hpy8I GTNNAC 2 cut(s) 262, 264
HpyAV CCTTC 1 cut(s) 16
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 2 cut(s) 141, 170
Kzo9I GATC 3 cut(s) 70, 154, 197
LpnPI CCDG 3 cut(s) 51, 77, 104
LweI GCATC 1 cut(s) 237
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 2 cut(s) 162, 175
MalI GATC 3 cut(s) 72, 156, 199
MboI GATC 3 cut(s) 70, 154, 197
MboII GAAGA 3 cut(s) 80, 194, 220
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 4 cut(s) 51, 63, 127, 185
MlyI GAGTC 1 cut(s) 255
MnlI CCTC 3 cut(s) 195, 198, 212
Mph1103I ATGCAT 1 cut(s) 172
MseI TTAA 1 cut(s) 54
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
NdeII GATC 3 cut(s) 70, 154, 197
NlaIII CATG 2 cut(s) 141, 170
NmuCI GTSAC 1 cut(s) 175
NsiI ATGCAT 1 cut(s) 172
NspI RCATGY 1 cut(s) 170
PaeR7I CTCGAG 1 cut(s) 243
PfeI GAWTC 1 cut(s) 109
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspXI VCTCGAGB 1 cut(s) 243
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SaqAI TTAA 1 cut(s) 54
Sau3AI GATC 3 cut(s) 70, 154, 197
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 244
SetI ASST 3 cut(s) 18, 93, 122
SfaNI GCATC 1 cut(s) 237
Sfr274I CTCGAG 1 cut(s) 243
SlaI CTCGAG 1 cut(s) 243
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
Sse9I AATT 4 cut(s) 51, 63, 127, 185
StyD4I CCNGG 1 cut(s) 90
TaiI ACGT 1 cut(s) 122
TaqI TCGA 3 cut(s) 153, 200, 244
TasI AATT 4 cut(s) 51, 63, 127, 185
TatI WGTACW 1 cut(s) 261
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseFI GTSAC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 228
TspGWI ACGGA 1 cut(s) 194
XapI RAATTY 2 cut(s) 127, 185
XceI RCATGY 1 cut(s) 170
XhoI CTCGAG 1 cut(s) 243
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.