Rmu_sc0029623.1_g000001

Belongs to the cullin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029623.1
OG0000162
Physical Location & Seq
Forward (+)
1 .. 2293
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029623.1_g000001.1.cds

Sequence Viewer

Length: 1186 bp
attgcacgacaagtatatggcatatgtcaatgattgctttataaatcactcactgtttcacaaggctttaaaagaggcatttgaggtgttttgtaataaagcggtttctgggagttcaagtgctgagttactggctggattctgcgacaatatactcaagaagggtggaagtgagaagttgagtgatgaggctatagaagaaacacttgagaaggttgttaagctgcttgcttatatcagtgataaagatctttttgcagaattctacaggaaaaagcttgcccgtcggctactttttgatcggagtgctaacgaggaccatgaaaaaagtattctaacaaaactgaagcagcagtgtggtggacagttcacctcaaagatggaaggaatggttacggatttgacagtggctcgggacaatcaggtcaactttgaagagtatcttaagaacaatgaaaatgttagtcctggtatggatttgacagtcacagttcttacaactggttactggccaagttataaatctttcgatcttaaccttcccgaagagatggtgaggtgtgtagaagtctttaaggcattctatgaaacaaaaacaaagcacaggaagcttacatggatttactctttgggaacctgcaacatcaatggcaagtttgagccaaaaacaattgaattggttgtatcaacctatcaggctgctctcctgctgctctttaatactgcagaaagattgagctattcagaaatattgacccagctaaaccttacccatgatgatttggttagattgcttcattccctgtcatgtgccaaatacaagattttactaaaggagcctgccacaaagactatctcaccaaatgacaactttgagttcaactctaagttcacagacagactgagaagaattaagattccccttccaccagtggatgaaaggaagaaagtaattgaagatgtggacaaagaccggcgatatgctattgatgctgcaattgttcggatcatgaagagcagaaaagtcctgggtcatcaacagttggtgatggagtgtgttgagcagttgggacggatgtttaagcctgatatcaaagcgatcaagaagcgcatcgaagatctcatcactcgtgactaccttgagcgggacaaggaaaacccgaacatgttcaagtatcttgcatga

Protein Analysis

394

Amino Acids

45.61

Weight (kDa)

8.56

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 42, 520
AasI GACNNNNNNGTC 1 cut(s) 423
Acc36I ACCTGC 1 cut(s) 645
AccBSI CCGCTC 1 cut(s) 1145
AciI CCGC 2 cut(s) 102, 1145
AclWI GGATC 1 cut(s) 1014
AcoI YGGCCR 1 cut(s) 510
AcsI RAATTY 1 cut(s) 261
AcuI CTGAAG 1 cut(s) 366
AfiI CCNNNNNNNGG 1 cut(s) 1145
AflII CTTAAG 1 cut(s) 444
AflIII ACRYGT 1 cut(s) 1165
AgsI TTSAA 6 cut(s) 118, 435, 675, 881, 957, 1172
AjnI CCWGG 2 cut(s) 467, 1027
AluBI AGCT 5 cut(s) 224, 278, 611, 739, 761
AluI AGCT 5 cut(s) 224, 278, 611, 739, 761
AlwI GGATC 1 cut(s) 1014
Ama87I CYCGRG 1 cut(s) 412
AoxI GGCC 1 cut(s) 510
ApeKI GCWGC 5 cut(s) 224, 350, 699, 710, 993
ApoI RAATTY 1 cut(s) 261
Asp700I GAANNNNTTC 1 cut(s) 1167
AspLEI GCGC 1 cut(s) 1111
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 4 cut(s) 362, 566, 850, 1058
AvaI CYCGRG 1 cut(s) 412
AvaII GGWCC 1 cut(s) 317
BalI TGGCCA 1 cut(s) 512
BauI CACGAG 1 cut(s) 1129
BbvI GCAGC 5 cut(s) 211, 362, 686, 697, 980
BccI CCATC 3 cut(s) 374, 545, 1043
BciT130I CCWGG 2 cut(s) 469, 1029
BfmI CTRYAG 3 cut(s) 193, 266, 724
BfrI CTTAAG 1 cut(s) 444
BfuAI ACCTGC 1 cut(s) 645
BglII AGATCT 2 cut(s) 248, 1118
BisI GCNGC 5 cut(s) 225, 351, 700, 711, 994
BlsI GCNGC 5 cut(s) 226, 352, 701, 712, 995
Bme1390I CCNGG 2 cut(s) 469, 1029
Bme18I GGWCC 1 cut(s) 317
BmeT110I CYCGRG 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 2 cut(s) 635, 838
BmrFI CCNGG 2 cut(s) 469, 1029
BmsI GCATC 2 cut(s) 980, 1120
BplI GAGNNNNNCTC 2 cut(s) 867, 899
BpuEI CTTGAG 3 cut(s) 141, 228, 1161
BsaBI GATNNNNATC 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 1028
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 1 cut(s) 1145
Bse118I RCCGGY 1 cut(s) 973
Bse1I ACTGG 4 cut(s) 136, 506, 513, 930
Bse8I GATNNNNATC 1 cut(s) 247
BseBI CCWGG 2 cut(s) 469, 1029
BseDI CCNNGG 1 cut(s) 1028
BseGI GGATG 2 cut(s) 941, 1081
BseJI GATNNNNATC 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 1145
BseMII CTCAG 2 cut(s) 115, 894
BseNI ACTGG 4 cut(s) 136, 506, 513, 930
BseXI GCAGC 5 cut(s) 211, 362, 686, 697, 980
BseYI CCCAGC 1 cut(s) 757
BshFI GGCC 1 cut(s) 512
BsiHKCI CYCGRG 1 cut(s) 412
BsiSI CCGG 1 cut(s) 974
BslFI GGGAC 3 cut(s) 429, 1084, 1161
BslI CCNNNNNNNGG 1 cut(s) 1145
BsmFI GGGAC 3 cut(s) 429, 1084, 1161
BsmI GAATGC 1 cut(s) 579
BsnI GGCC 1 cut(s) 512
BsoBI CYCGRG 1 cut(s) 412
Bsp143I GATC 6 cut(s) 248, 299, 530, 1006, 1099, 1118
BspACI CCGC 2 cut(s) 102, 1145
BspANI GGCC 1 cut(s) 512
BspCNI CTCAG 2 cut(s) 116, 895
BspHI TCATGA 1 cut(s) 1009
BspLI GGNNCC 2 cut(s) 635, 838
BspMAI CTGCAG 1 cut(s) 728
BspMI ACCTGC 1 cut(s) 645
BspPI GGATC 1 cut(s) 1014
BspQI GCTCTTC 1 cut(s) 1008
BspTI CTTAAG 1 cut(s) 444
BsrBI CCGCTC 1 cut(s) 1145
BsrFI RCCGGY 1 cut(s) 973
BsrI ACTGG 4 cut(s) 136, 506, 513, 930
BssAI RCCGGY 1 cut(s) 973
BssECI CCNNGG 1 cut(s) 1028
BssMI GATC 6 cut(s) 248, 299, 530, 1006, 1099, 1118
BssSI CACGAG 1 cut(s) 1129
Bst2BI CACGAG 1 cut(s) 1129
Bst2UI CCWGG 2 cut(s) 469, 1029
Bst4CI ACNGT 6 cut(s) 55, 367, 407, 485, 491, 1042
Bst6I CTCTTC 3 cut(s) 430, 541, 1008
BstAFI CTTAAG 1 cut(s) 444
BstC8I GCNNGC 3 cut(s) 229, 280, 841
BstDEI CTNAG 3 cut(s) 124, 886, 903
BstF5I GGATG 2 cut(s) 941, 1081
BstHHI GCGC 1 cut(s) 1111
BstKTI GATC 6 cut(s) 251, 302, 533, 1009, 1102, 1121
BstMBI GATC 6 cut(s) 248, 299, 530, 1006, 1099, 1118
BstMWI GCNNNNNNNGC 2 cut(s) 608, 990
BstNI CCWGG 2 cut(s) 469, 1029
BstNSI RCATGY 1 cut(s) 1169
BstSCI CCNGG 2 cut(s) 467, 1027
BstSFI CTRYAG 3 cut(s) 193, 266, 724
BstV1I GCAGC 5 cut(s) 211, 362, 686, 697, 980
BstX2I RGATCY 2 cut(s) 248, 1118
BstYI RGATCY 2 cut(s) 248, 1118
BsuRI GGCC 1 cut(s) 512
BtsCI GGATG 2 cut(s) 941, 1081
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 5 cut(s) 51, 245, 360, 412, 937
BveI ACCTGC 1 cut(s) 645
Cac8I GCNNGC 3 cut(s) 229, 280, 841
CciI TCATGA 1 cut(s) 1009
CfoI GCGC 1 cut(s) 1111
Cfr10I RCCGGY 1 cut(s) 973
Cfr13I GGNCC 1 cut(s) 317
CspCI CAANNNNNGTGG 2 cut(s) 146, 181
CviAII CATG 7 cut(s) 321, 616, 774, 808, 1010, 1166, 1183
DdeI CTNAG 3 cut(s) 124, 886, 903
DpnI GATC 6 cut(s) 250, 301, 532, 1008, 1101, 1120
DpnII GATC 6 cut(s) 248, 299, 530, 1006, 1099, 1118
DraI TTTAAA 1 cut(s) 70
DrdI GACNNNNNNGTC 1 cut(s) 423
DseDI GACNNNNNNGTC 1 cut(s) 423
EaeI YGGCCR 1 cut(s) 510
Eam1104I CTCTTC 3 cut(s) 430, 541, 1008
EarI CTCTTC 3 cut(s) 430, 541, 1008
Eco32I GATATC 1 cut(s) 1091
Eco47I GGWCC 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 412
EcoRI GAATTC 1 cut(s) 261
EcoRII CCWGG 2 cut(s) 467, 1027
EcoRV GATATC 1 cut(s) 1091
FaeI CATG 7 cut(s) 324, 619, 777, 811, 1013, 1169, 1186
FalI AAGNNNNNCTT 4 cut(s) 190, 222, 427, 459
FaqI GGGAC 3 cut(s) 429, 1084, 1161
FatI CATG 7 cut(s) 320, 615, 773, 807, 1009, 1165, 1182
FauI CCCGC 1 cut(s) 1138
FauNDI CATATG 1 cut(s) 23
Fnu4HI GCNGC 5 cut(s) 225, 351, 700, 711, 994
FokI GGATG 2 cut(s) 948, 1088
Fsp4HI GCNGC 5 cut(s) 225, 351, 700, 711, 994
GlaI GCGC 1 cut(s) 1110
GluI GCNGC 5 cut(s) 225, 351, 700, 711, 994
GsaI CCCAGC 1 cut(s) 761
HaeIII GGCC 1 cut(s) 512
HapII CCGG 1 cut(s) 974
HhaI GCGC 1 cut(s) 1111
Hin1II CATG 7 cut(s) 324, 619, 777, 811, 1013, 1169, 1186
Hin6I GCGC 1 cut(s) 1109
HinP1I GCGC 1 cut(s) 1109
HincII GTYRAC 1 cut(s) 428
HindII GTYRAC 1 cut(s) 428
HindIII AAGCTT 2 cut(s) 276, 609
HinfI GANTC 2 cut(s) 139, 917
HpaII CCGG 1 cut(s) 974
HphI GGTGA 4 cut(s) 362, 566, 850, 1058
Hpy166II GTNNAC 5 cut(s) 363, 370, 428, 892, 965
Hpy188I TCNGA 3 cut(s) 304, 746, 1006
Hpy188III TCNNGA 6 cut(s) 158, 414, 543, 1010, 1103, 1131
Hpy8I GTNNAC 5 cut(s) 363, 370, 428, 892, 965
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 5 cut(s) 155, 206, 378, 549, 933
HpyCH4III ACNGT 6 cut(s) 55, 367, 407, 485, 491, 1042
HpyCH4V TGCA 6 cut(s) 5, 258, 640, 726, 996, 1182
HpyF10VI GCNNNNNNNGC 2 cut(s) 608, 990
HpyF3I CTNAG 3 cut(s) 124, 886, 903
Hsp92II CATG 7 cut(s) 324, 619, 777, 811, 1013, 1169, 1186
HspAI GCGC 1 cut(s) 1109
Kzo9I GATC 6 cut(s) 248, 299, 530, 1006, 1099, 1118
LguI GCTCTTC 1 cut(s) 1008
LmnI GCTCC 1 cut(s) 836
Lsp1109I GCAGC 5 cut(s) 211, 362, 686, 697, 980
LweI GCATC 2 cut(s) 980, 1120
MaeIII GTNAC 5 cut(s) 127, 392, 485, 504, 1131
MalI GATC 6 cut(s) 250, 301, 532, 1008, 1101, 1120
MbiI CCGCTC 1 cut(s) 1145
MboI GATC 6 cut(s) 248, 299, 530, 1006, 1099, 1118
MboII GAAGA 8 cut(s) 210, 447, 558, 919, 956, 969, 1025, 1128
MfeI CAATTG 2 cut(s) 670, 997
MflI RGATCY 2 cut(s) 248, 1118
MlsI TGGCCA 1 cut(s) 512
MluCI AATT 6 cut(s) 261, 670, 675, 910, 952, 997
MluNI TGGCCA 1 cut(s) 512
MnlI CCTC 6 cut(s) 68, 77, 182, 308, 383, 550
Mox20I TGGCCA 1 cut(s) 512
MroXI GAANNNNTTC 1 cut(s) 1167
MscI TGGCCA 1 cut(s) 512
MseI TTAA 8 cut(s) 69, 220, 445, 535, 574, 718, 913, 1081
Msp20I TGGCCA 1 cut(s) 512
MspCI CTTAAG 1 cut(s) 444
MspI CCGG 1 cut(s) 974
MspR9I CCNGG 2 cut(s) 469, 1029
MunI CAATTG 2 cut(s) 670, 997
Mva1269I GAATGC 1 cut(s) 579
MvaI CCWGG 2 cut(s) 469, 1029
MwoI GCNNNNNNNGC 2 cut(s) 608, 990
NdeI CATATG 1 cut(s) 23
NdeII GATC 6 cut(s) 248, 299, 530, 1006, 1099, 1118
NlaIII CATG 7 cut(s) 324, 619, 777, 811, 1013, 1169, 1186
NlaIV GGNNCC 2 cut(s) 635, 838
NmuCI GTSAC 2 cut(s) 485, 1131
NspI RCATGY 1 cut(s) 1169
PagI TCATGA 1 cut(s) 1009
PciI ACATGT 1 cut(s) 1165
PciSI GCTCTTC 1 cut(s) 1008
PctI GAATGC 1 cut(s) 579
PdmI GAANNNNTTC 1 cut(s) 1167
PfeI GAWTC 2 cut(s) 139, 917
PkrI GCNGC 5 cut(s) 226, 352, 701, 712, 995
PscI ACATGT 1 cut(s) 1165
PsiI TTATAA 2 cut(s) 42, 520
Psp6I CCWGG 2 cut(s) 467, 1027
PspFI CCCAGC 1 cut(s) 757
PspGI CCWGG 2 cut(s) 467, 1027
PspN4I GGNNCC 2 cut(s) 635, 838
PspPI GGNCC 1 cut(s) 317
PstI CTGCAG 1 cut(s) 728
PsuI RGATCY 2 cut(s) 248, 1118
SapI GCTCTTC 1 cut(s) 1008
SaqAI TTAA 8 cut(s) 69, 220, 445, 535, 574, 718, 913, 1081
SatI GCNGC 5 cut(s) 225, 351, 700, 711, 994
Sau3AI GATC 6 cut(s) 248, 299, 530, 1006, 1099, 1118
Sau96I GGNCC 1 cut(s) 317
ScrFI CCNGG 2 cut(s) 469, 1029
SfaNI GCATC 2 cut(s) 980, 1120
SfcI CTRYAG 3 cut(s) 193, 266, 724
SinI GGWCC 1 cut(s) 317
SmlI CTYRAG 4 cut(s) 156, 207, 444, 1140
SmoI CTYRAG 4 cut(s) 156, 207, 444, 1140
Sse9I AATT 6 cut(s) 261, 670, 675, 910, 952, 997
SsiI CCGC 2 cut(s) 102, 1145
SspI AATATT 1 cut(s) 751
StyD4I CCNGG 2 cut(s) 467, 1027
TaaI ACNGT 6 cut(s) 55, 367, 407, 485, 491, 1042
TaqI TCGA 2 cut(s) 529, 1114
TasI AATT 6 cut(s) 261, 670, 675, 910, 952, 997
TfiI GAWTC 2 cut(s) 139, 917
Tru1I TTAA 8 cut(s) 69, 220, 445, 535, 574, 718, 913, 1081
Tru9I TTAA 8 cut(s) 69, 220, 445, 535, 574, 718, 913, 1081
TscAI CASTG 5 cut(s) 58, 245, 360, 412, 937
TseFI GTSAC 2 cut(s) 485, 1131
TseI GCWGC 5 cut(s) 224, 350, 699, 710, 993
Tsp45I GTSAC 2 cut(s) 485, 1131
TspDTI ATGAA 6 cut(s) 337, 469, 601, 786, 952, 1026
TspGWI ACGGA 2 cut(s) 411, 1088
TspRI CASTG 5 cut(s) 58, 245, 360, 412, 937
Vha464I CTTAAG 1 cut(s) 444
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 1 cut(s) 261
XceI RCATGY 1 cut(s) 1169
XmnI GAANNNNTTC 1 cut(s) 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.