RchiOBHm_Chr3g0471921

Belongs to the cullin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000162
Physical Location & Seq
Forward (+)
17793662 .. 17794776
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43766

Sequence Viewer

Length: 1068 bp
ATGCCAAACAGAAATATTGAATGCCATTCACCTCTGCTACCTTCCATGTTCAGAGTACATGTTGAAGACAGAGGAATGCAGAAGGAGAGGGAGAGGGCATCTCATTACTTGTATTCGACCAGTGAGCCGAAGCTGTTGGAGAAAGTGCAGCATGAGTTGTTGGTGGTTTATGACACCCAAATCCTTGATAAGGAGGAATCTGGATGCCGGGTTTTGCTTCAGAACGATAAGGTGGAGGATTTGTCTAGGATATATAGGCTCTACCTTAATATACCTATAGGCTTGGAACCTGTTGCTAGCGTATTCAGAGAGCATGTTACTAATGAAGGTAAAGCCTTGGTCCAACAGGCTGAAGAGGCTGTTGCAAGTAGTAATCAGCAGGCTTCAAGTGGAGCTGAACAATATGGACTTGTGCTTATCCAAAAATTAATAGAGCTGCATGACAAGTATTTGGGATATGTGACTGGTTGCTTTATGAACCATTCACTCTTTCACAAGGCTCTGAAGCAAGCTTTTGAGGTGGTTTGCGATAAATCTGTTGCCGGGAGTTCTAGTGCCAAAATGCTTGCTGCTTTCTGTGATAATATCCTCAAAATGGCTGGAAGTAAGTTGAGCGAGGAGGCCGTAGAAGAAACCCTAGAAAAGTTCTGCAGGAAAAAACTTGCCCGTAGGCTGCTTTTCATTCGGAGTGGGAGTGGGAGTACTGAAGACCGTGAGAAAAGTCTTCTGACAAAGCTGAAGCAGCAATGTGGTGGACAATTCACCTCCAAGATGGAAGGAATGATCACCGATTTGACAGTGGGTAGAGAATCACTCACCAGGTTTGGAGAGTTCATCCTAGAAAAGAATCGAAATCCCGGGCTCAATTTGTCAGTCCAGGTTCTCACAACCGGTTACTGGCATGGCAAAGTTACAAATCGTCTGATCTCAACCTTCCTGAAGAGATGGTCAAGTGTGTTGAAGTTTTCAAGGATTTCTTTAATAGGGAATACCAGCGCAGAAAGCTGTCATGGATATACTCACTGGGTTGTTCCAACGTCGACGGCAAGTTTGATTAGAGAACCATAG

Protein Analysis

355

Amino Acids

40.04

Weight (kDa)

8.66

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cullin PF00888 25 - 216 1.3e-36 Cullin alpha solenoid domain
Cullin PF00888 214 - 270 5.1e-15 Cullin alpha solenoid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1040
AcuI CTGAAG 6 cut(s) 203, 372, 524, 726, 758, 959
AfaI GTAC 2 cut(s) 57, 703
AfiI CCNNNNNNNGG 3 cut(s) 190, 595, 897
AflIII ACRYGT 1 cut(s) 58
AgeI ACCGGT 1 cut(s) 890
AgsI TTSAA 5 cut(s) 20, 65, 387, 961, 969
AjnI CCWGG 2 cut(s) 818, 876
AluBI AGCT 6 cut(s) 133, 395, 436, 512, 736, 1005
AluI AGCT 6 cut(s) 133, 395, 436, 512, 736, 1005
Ama87I CYCGRG 1 cut(s) 857
AoxI GGCC 1 cut(s) 621
ApeKI GCWGC 5 cut(s) 148, 436, 569, 673, 742
ArsI GACNNNNNNTTYG 2 cut(s) 1033, 1065
AseI ATTAAT 1 cut(s) 428
AsiGI ACCGGT 1 cut(s) 890
AspLEI GCGC 1 cut(s) 998
AspS9I GGNCC 1 cut(s) 340
AsuC2I CCSGG 4 cut(s) 209, 544, 858, 859
AsuHPI GGTGA 4 cut(s) 21, 754, 778, 808
AsuNHI GCTAGC 1 cut(s) 296
AvaI CYCGRG 1 cut(s) 857
AvaII GGWCC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 864
BbsI GAAGAC 3 cut(s) 72, 714, 716
BbvI GCAGC 5 cut(s) 160, 423, 556, 660, 754
BccI CCATC 2 cut(s) 766, 939
BceAI ACGGC 2 cut(s) 608, 1059
BciT130I CCWGG 2 cut(s) 820, 878
BclI TGATCA 1 cut(s) 783
BcnI CCSGG 4 cut(s) 209, 544, 858, 859
BfaI CTAG 5 cut(s) 246, 297, 552, 638, 839
BfmI CTRYAG 2 cut(s) 276, 649
BisI GCNGC 5 cut(s) 149, 437, 570, 674, 743
BlsI GCNGC 5 cut(s) 150, 438, 571, 675, 744
BmcAI AGTACT 1 cut(s) 703
Bme1390I CCNGG 6 cut(s) 209, 544, 820, 858, 859, 878
Bme18I GGWCC 1 cut(s) 340
BmeT110I CYCGRG 1 cut(s) 857
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 6 cut(s) 209, 544, 820, 858, 859, 878
BmrI ACTGGG 1 cut(s) 1033
BmsI GCATC 2 cut(s) 107, 194
BmtI GCTAGC 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 1033
BpiI GAAGAC 3 cut(s) 72, 714, 716
BplI GAGNNNNNCTC 4 cut(s) 85, 117, 798, 830
BpuMI CCSGG 4 cut(s) 209, 544, 858, 859
BsaJI CCNNGG 2 cut(s) 336, 857
BsaWI WCCGGW 1 cut(s) 890
BsaXI ACNNNNNCTCC 8 cut(s) 227, 257, 538, 568, 679, 685, 709, 715
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 595, 897
Bse118I RCCGGY 1 cut(s) 890
Bse1I ACTGG 4 cut(s) 120, 469, 902, 1028
Bse3DI GCAATG 1 cut(s) 752
BseBI CCWGG 2 cut(s) 820, 878
BseDI CCNNGG 2 cut(s) 336, 857
BseGI GGATG 2 cut(s) 209, 834
BseLI CCNNNNNNNGG 3 cut(s) 190, 595, 897
BseMI GCAATG 1 cut(s) 752
BseNI ACTGG 4 cut(s) 120, 469, 902, 1028
BseRI GAGGAG 1 cut(s) 632
BseXI GCAGC 5 cut(s) 160, 423, 556, 660, 754
BsgI GTGCAG 1 cut(s) 167
BshFI GGCC 1 cut(s) 623
BshTI ACCGGT 1 cut(s) 890
BsiHKCI CYCGRG 1 cut(s) 857
BsiSI CCGG 4 cut(s) 208, 543, 858, 891
BslI CCNNNNNNNGG 3 cut(s) 190, 595, 897
BsmI GAATGC 2 cut(s) 26, 81
BsnI GGCC 1 cut(s) 623
BsoBI CYCGRG 1 cut(s) 857
Bsp1286I GDGCHC 1 cut(s) 864
Bsp143I GATC 2 cut(s) 783, 924
BspANI GGCC 1 cut(s) 623
BspLI GGNNCC 1 cut(s) 288
BspMAI CTGCAG 1 cut(s) 653
BspOI GCTAGC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 752
BsrFI RCCGGY 1 cut(s) 890
BsrI ACTGG 4 cut(s) 120, 469, 902, 1028
BssAI RCCGGY 1 cut(s) 890
BssECI CCNNGG 2 cut(s) 336, 857
BssMI GATC 2 cut(s) 783, 924
BssT1I CCWWGG 1 cut(s) 336
Bst2UI CCWGG 2 cut(s) 820, 878
Bst4CI ACNGT 2 cut(s) 713, 799
Bst6I CTCTTC 2 cut(s) 348, 935
BstC8I GCNNGC 4 cut(s) 298, 381, 510, 567
BstENI CCTNNNNNAGG 1 cut(s) 188
BstF5I GGATG 2 cut(s) 209, 834
BstHHI GCGC 1 cut(s) 998
BstKTI GATC 2 cut(s) 786, 927
BstMBI GATC 2 cut(s) 783, 924
BstMWI GCNNNNNNNGC 3 cut(s) 356, 742, 1002
BstNI CCWGG 2 cut(s) 820, 878
BstNSI RCATGY 2 cut(s) 62, 317
BstSCI CCNGG 6 cut(s) 207, 542, 818, 856, 857, 876
BstSFI CTRYAG 2 cut(s) 276, 649
BstV1I GCAGC 5 cut(s) 160, 423, 556, 660, 754
BstV2I GAAGAC 3 cut(s) 72, 714, 716
BsuRI GGCC 1 cut(s) 623
BtsCI GGATG 2 cut(s) 209, 834
BtsIMutI CAGTG 3 cut(s) 127, 804, 1021
Cac8I GCNNGC 4 cut(s) 298, 381, 510, 567
CfoI GCGC 1 cut(s) 998
Cfr10I RCCGGY 1 cut(s) 890
Cfr13I GGNCC 1 cut(s) 340
Cfr9I CCCGGG 1 cut(s) 857
CsiI ACCWGGT 1 cut(s) 818
Csp6I GTAC 2 cut(s) 56, 702
CspAI ACCGGT 1 cut(s) 890
CviAII CATG 7 cut(s) 46, 59, 152, 314, 440, 902, 1010
CviQI GTAC 2 cut(s) 56, 702
DpnI GATC 2 cut(s) 785, 926
DpnII GATC 2 cut(s) 783, 924
Eam1104I CTCTTC 2 cut(s) 348, 935
EarI CTCTTC 2 cut(s) 348, 935
Eco130I CCWWGG 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 864
Eco47I GGWCC 1 cut(s) 340
Eco57I CTGAAG 6 cut(s) 203, 372, 524, 726, 758, 959
Eco88I CYCGRG 1 cut(s) 857
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoRII CCWGG 2 cut(s) 818, 876
EcoT14I CCWWGG 1 cut(s) 336
EcoT38I GRGCYC 1 cut(s) 864
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 7 cut(s) 49, 62, 155, 317, 443, 905, 1013
FalI AAGNNNNNCTT 2 cut(s) 961, 993
FatI CATG 7 cut(s) 45, 58, 151, 313, 439, 901, 1009
FbaI TGATCA 1 cut(s) 783
FblI GTMKAC 1 cut(s) 1040
Fnu4HI GCNGC 5 cut(s) 149, 437, 570, 674, 743
FokI GGATG 2 cut(s) 216, 821
FriOI GRGCYC 1 cut(s) 864
Fsp4HI GCNGC 5 cut(s) 149, 437, 570, 674, 743
FspBI CTAG 5 cut(s) 246, 297, 552, 638, 839
GlaI GCGC 1 cut(s) 997
GluI GCNGC 5 cut(s) 149, 437, 570, 674, 743
HaeIII GGCC 1 cut(s) 623
HapII CCGG 4 cut(s) 208, 543, 858, 891
HhaI GCGC 1 cut(s) 998
Hin1II CATG 7 cut(s) 49, 62, 155, 317, 443, 905, 1013
Hin6I GCGC 1 cut(s) 996
HinP1I GCGC 1 cut(s) 996
HincII GTYRAC 1 cut(s) 1041
HindII GTYRAC 1 cut(s) 1041
HindIII AAGCTT 1 cut(s) 510
HinfI GANTC 3 cut(s) 197, 809, 847
HpaII CCGG 4 cut(s) 208, 543, 858, 891
HphI GGTGA 4 cut(s) 21, 754, 778, 808
Hpy166II GTNNAC 2 cut(s) 755, 1041
Hpy188I TCNGA 7 cut(s) 53, 222, 308, 504, 687, 729, 924
Hpy188III TCNNGA 2 cut(s) 201, 937
Hpy8I GTNNAC 2 cut(s) 755, 1041
Hpy99I CGWCG 2 cut(s) 1042, 1045
HpyAV CCTTC 5 cut(s) 51, 76, 320, 770, 943
HpyCH4III ACNGT 2 cut(s) 713, 799
HpyCH4IV ACGT 1 cut(s) 1037
HpyCH4V TGCA 5 cut(s) 79, 148, 365, 439, 651
HpyF10VI GCNNNNNNNGC 3 cut(s) 356, 742, 1002
HpySE526I ACGT 1 cut(s) 1037
Hsp92II CATG 7 cut(s) 49, 62, 155, 317, 443, 905, 1013
HspAI GCGC 1 cut(s) 996
Ksp22I TGATCA 1 cut(s) 783
Kzo9I GATC 2 cut(s) 783, 924
LmnI GCTCC 1 cut(s) 392
Lsp1109I GCAGC 5 cut(s) 160, 423, 556, 660, 754
LweI GCATC 2 cut(s) 107, 194
MabI ACCWGGT 1 cut(s) 818
MaeI CTAG 5 cut(s) 246, 297, 552, 638, 839
MaeII ACGT 1 cut(s) 1037
MaeIII GTNAC 4 cut(s) 316, 460, 893, 910
MalI GATC 2 cut(s) 785, 926
MboI GATC 2 cut(s) 783, 924
MboII GAAGA 6 cut(s) 77, 365, 641, 716, 719, 952
MhlI GDGCHC 1 cut(s) 864
MluCI AATT 3 cut(s) 425, 758, 865
MmeI TCCRAC 3 cut(s) 117, 367, 1058
MseI TTAA 3 cut(s) 267, 428, 980
MspI CCGG 4 cut(s) 208, 543, 858, 891
MspR9I CCNGG 6 cut(s) 209, 544, 820, 858, 859, 878
Mva1269I GAATGC 2 cut(s) 26, 81
MvaI CCWGG 2 cut(s) 820, 878
MwoI GCNNNNNNNGC 3 cut(s) 356, 742, 1002
NciI CCSGG 4 cut(s) 209, 544, 858, 859
NdeII GATC 2 cut(s) 783, 924
NheI GCTAGC 1 cut(s) 296
NlaIII CATG 7 cut(s) 49, 62, 155, 317, 443, 905, 1013
NlaIV GGNNCC 1 cut(s) 288
NmuCI GTSAC 1 cut(s) 460
NspI RCATGY 2 cut(s) 62, 317
PciI ACATGT 1 cut(s) 58
PctI GAATGC 2 cut(s) 26, 81
PfeI GAWTC 3 cut(s) 197, 809, 847
PinAI ACCGGT 1 cut(s) 890
PkrI GCNGC 5 cut(s) 150, 438, 571, 675, 744
PscI ACATGT 1 cut(s) 58
PshBI ATTAAT 1 cut(s) 428
Psp6I CCWGG 2 cut(s) 818, 876
PspGI CCWGG 2 cut(s) 818, 876
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 1 cut(s) 340
PstI CTGCAG 1 cut(s) 653
RsaI GTAC 2 cut(s) 57, 703
RsaNI GTAC 2 cut(s) 56, 702
SalI GTCGAC 1 cut(s) 1039
SaqAI TTAA 3 cut(s) 267, 428, 980
SatI GCNGC 5 cut(s) 149, 437, 570, 674, 743
Sau3AI GATC 2 cut(s) 783, 924
Sau96I GGNCC 1 cut(s) 340
ScaI AGTACT 1 cut(s) 703
ScrFI CCNGG 6 cut(s) 209, 544, 820, 858, 859, 878
SduI GDGCHC 1 cut(s) 864
SexAI ACCWGGT 1 cut(s) 818
SfaNI GCATC 2 cut(s) 107, 194
SfcI CTRYAG 2 cut(s) 276, 649
SgrDI CGTCGACG 1 cut(s) 1039
SinI GGWCC 1 cut(s) 340
SmaI CCCGGG 1 cut(s) 859
Sse9I AATT 3 cut(s) 425, 758, 865
SspI AATATT 1 cut(s) 16
SspMI CTAG 5 cut(s) 246, 297, 552, 638, 839
StyD4I CCNGG 6 cut(s) 207, 542, 818, 856, 857, 876
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 2 cut(s) 713, 799
TaiI ACGT 1 cut(s) 1040
TaqI TCGA 3 cut(s) 116, 850, 1040
TasI AATT 3 cut(s) 425, 758, 865
TatI WGTACW 2 cut(s) 55, 701
TfiI GAWTC 3 cut(s) 197, 809, 847
Tru1I TTAA 3 cut(s) 267, 428, 980
Tru9I TTAA 3 cut(s) 267, 428, 980
TscAI CASTG 3 cut(s) 127, 804, 1028
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 5 cut(s) 148, 436, 569, 673, 742
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 4 cut(s) 339, 491, 670, 823
TspMI CCCGGG 1 cut(s) 857
TspRI CASTG 3 cut(s) 127, 804, 1028
VpaK11BI GGWCC 1 cut(s) 340
VspI ATTAAT 1 cut(s) 428
XagI CCTNNNNNAGG 1 cut(s) 188
XceI RCATGY 2 cut(s) 62, 317
XmaI CCCGGG 1 cut(s) 857
XmiI GTMKAC 1 cut(s) 1040
XspI CTAG 5 cut(s) 246, 297, 552, 638, 839
ZrmI AGTACT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.