Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000162

Physical Location & Seq

Genomic Coordinates Forward (+)

15714890 .. 15717683

Gene Structure 2794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2226 bp

ATGGGAGCCAAAGTCATCCAATTCGATCAAGGCTGGAGCTCTCTCCAGAAGGCCATCACGAAGCTGGAGAACATTCTAGAGGGAGCTCCGGGCGGCGGTCACTTCAGCCCCAACGAGTACATGGCCGTCTACTCCACCATCTACGATATGTGCACTCAACACACCCCCAATTACTCTCCGCAGCTCTACGACAAGTACCGCGAGTCGTTGGAGGAGTACACCGTTGCGGAGGTGCTGCCGGCGATTGCGGAGAAGCACGGCGAGTTTATGCTCCGGGAGCTTGTGGTGAGGTGGGGGAATCATAAGGTGTTGGTGAGGTGGTTGTCTCATTTCTTTAGTTATCTTGACAGGTGGTACGTCAGGACGAAGAACCTGCCGAAATTGAAGGAGGCTGGGCTTGTTGTGTTTCGCGACAAGGTTTATGAGAAGGTGAAGAGCAATGTGGTTGGTTGTGTGATTGATATTTTAGGGAAGGAGCGAGGAGGGGAGCAGATTGATAGGGGGTTGTTGAAGAATGTGGTGGATGTGTTTGTGGGGGTTGGGATGGGGGGGATGGGTTGTTATGAGGCGGATTTCGAGGAGGGGATGGTTGAGCATAGTGGGGAGTATTATTCGCGCAAGGCGGCGAGTTGGATTTTGGAGGATACTTGTCCGGAGTATATGGTGAAGGTGGAGGAGTGCTTGAGGAGGGAGAGGGAGAGGGCTTGTCAGTACTTCCATTCGAGCAGCGAGCAGAAGCTGGTGGAGAGAGTGCATCATGAGCTGCTGGTGGTTCATGCGCGCCAGCTGTTTGATAAAGAGGATTCTGGATGTCGTGCTTTGATTCGCGGTGATAAGGTGGAGGATTTGTCTAGGATGTTTAGGCTTTACCATAAGGTACCTAAGGGGTTGGAGCCTGTTGGGGATGTGTTTAGAGAACATGTTACGGATGAAGGTAAGGCCTTGGTTCAGCAGGCTGAAGATGCTTTGAGTAGCCAGCAGGGTTCGAAAGGAGCTGTGGCTGAAGTGGGACTCACCCTTGTCAGGAATATTTTGGAGCTCCATGATAAGTATATGGCCTATGTCAATGGTTGCTTTATGAACCAGTCGGTCTTTCACAAGGCTTTGAAAGTGGCTTTTGAGGTGTTTTGCAATAAATCTGTTGCCGGAAGTTCGAGCGCTGAATTACTTGCTGTATTCTGTGATAGTTTACTAAAGAAGGGAACTAGTGAAAAGTTGAGTGATGAGACCATTGAGGAAACTCTTGAGAAGGTTGCTGTGCTGCTTGCCTATTATAGTGACAAAGATCTTTTTGCAGAATTCTGTAGGAAAAAGCTTGCCCATCGTCTGCTGTTTGATCGGAGTGCAAACCAAGACCATGAGACAAGTTTTCTATCCAAGCTGAAACAGCAATGTGGTGGACAGTTCACCTCAAAGATGCAGACAATGGTCACAGATATGGCTCTGGCAAAGGATATGCGTACCAATTTCGAACAATATGTTGGAACCAACCCAAGTATTAAACCTGGGATCGACTTGACAGTTACAGTTCTTAGAACTGGTAGCTGGCCAAGTTACAAATCATCTGCTCTTAACCTTCCTGAAGAGATGGTCAAGTGCGTTGAAGTGTTCAAAGGATTCTATGGTTCGCAAATGAAAGACAGAAAATTGGTGTGGATTTACTCATTGGGAACTTGCAACCTTATTGGAAAGTTTGAACCAAAACCCATTGAATTGGTTGTATCAACCTATCAAGGTGCTCTCCTGCTGCTATTCAATCATGCTGATAGATTAAGCTTCTCAGAAATATCAACTCAGCTAAATCTCACCAATGAGGACTTGGTTAGAGTGCTTAGTTCACTATCATGTGCCAAGTACAAGATCCTCATTAAGGAGCCAAATACCAAGACTGTTACGGCAGATGACACCTTTGTGTTCAACTCGAAGTTTAATGACAGAATGAGGAAAATCAGGATTCCTCTCCCACCATTGGTTGATGAAAAGAAAAAGGTGACTGAAGATGTTGAAAAAGAGCGGAAGTATGCTATTGATGCTGCAATTGTGAGGATTATGAAGAGTCGAAAAATTTTGGGTCATCAAAAATTAGTCATGGAGTGTGTTGAGATGGTGCAGCACGTGTTCAAACCGGACATCAAAGCAATTAAAAAGCGCATTGAAGATCTAATTTCCCGTGATTACCTGGAGAGGGACCAGGAAGACTCTAATACGTTCAAGTATGTTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000228 GO:0000793 GO:0000794 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009524 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010154 GO:0015630 GO:0019899 GO:0022414 GO:0023052 GO:0031461 GO:0031625 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0099402 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Cullin Cullin_Nedd8

Protein Analysis

742

Amino Acids

84.62

Weight (kDa)

7.25

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin	PF00888	12 - 486	6.9e-124	Cullin alpha solenoid domain
Cullin_AB	PF26557	510 - 643	1.9e-40	Cullin alpha+beta domain
Cullin_Nedd8	PF10557	671 - 733	2.6e-25	Cullin protein neddylation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca	FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica	MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica	Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis	pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis	RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata	RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora	Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa	Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha	Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana	Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	381
Acc65I	GGTACC	1 cut(s)	877
AccB1I	GGYRCC	1 cut(s)	877
AccBSI	CCGCTC	1 cut(s)	2014
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	5 cut(s)	201, 411, 616, 781, 828
AccIII	TCCGGA	1 cut(s)	652
AclWI	GGATC	2 cut(s)	1517, 1855
AcoI	YGGCCR	2 cut(s)	123, 1547
AcsI	RAATTY	2 cut(s)	1298, 2064
AcuI	CTGAAG	5 cut(s)	88, 978, 1023, 1602, 2016
AcvI	CACGTG	1 cut(s)	2116
AfaI	GTAC	8 cut(s)	119, 197, 218, 356, 713, 879, 1462, 1856
AfeI	AGCGCT	1 cut(s)	1159
AfiI	CCNNNNNNNGG	5 cut(s)	95, 1023, 1870, 1969, 2185
AflIII	ACRYGT	2 cut(s)	919, 2115
AhlI	ACTAGT	1 cut(s)	1205
AjnI	CCWGG	3 cut(s)	1504, 2178, 2190
AjuI	GAANNNNNNNTTGG	2 cut(s)	1464, 1496
AleI	CACNNNNGTG	1 cut(s)	1910
Alw21I	GWGCWC	5 cut(s)	41, 88, 155, 1041, 1741
Alw26I	GTCTC	3 cut(s)	330, 1220, 1355
Alw44I	GTGCAC	1 cut(s)	151
AlwI	GGATC	2 cut(s)	1517, 1855
AlwNI	CAGNNNCTG	1 cut(s)	739
Aor13HI	TCCGGA	1 cut(s)	652
Aor51HI	AGCGCT	1 cut(s)	1159
AoxI	GGCC	5 cut(s)	51, 123, 939, 1056, 1547
ApaLI	GTGCAC	1 cut(s)	151
ApeKI	GCWGC	8 cut(s)	181, 235, 726, 763, 1261, 1747, 2033, 2110
ApoI	RAATTY	2 cut(s)	1298, 2064
Asp718I	GGTACC	1 cut(s)	877
AspLEI	GCGC	5 cut(s)	618, 781, 783, 1160, 2151
AspS9I	GGNCC	1 cut(s)	2188
AsuC2I	CCSGG	2 cut(s)	90, 275
AsuHPI	GGTGA	9 cut(s)	298, 325, 442, 676, 842, 1006, 1399, 1798, 2002
AsuII	TTCGAA	2 cut(s)	986, 1470
AvaII	GGWCC	1 cut(s)	2188
AxyI	CCTNAGG	1 cut(s)	882
BaeGI	GKGCMC	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	1549
BanI	GGYRCC	1 cut(s)	877
BanII	GRGCYC	3 cut(s)	41, 88, 1041
BbrPI	CACGTG	1 cut(s)	2116
BbsI	GAAGAC	1 cut(s)	2202
Bbv12I	GWGCWC	5 cut(s)	41, 88, 155, 1041, 1741
BbvI	GCAGC	8 cut(s)	193, 222, 738, 750, 1248, 1734, 2020, 2122
BccI	CCATC	8 cut(s)	62, 146, 538, 547, 580, 1329, 1582, 2098
BceAI	ACGGC	3 cut(s)	110, 274, 1911
BcgI	CGANNNNNNTGC	2 cut(s)	355, 389
BciT130I	CCWGG	3 cut(s)	1506, 2180, 2192
BciVI	GTATCC	1 cut(s)	637
BcnI	CCSGG	2 cut(s)	90, 275
BcoDI	GTCTC	3 cut(s)	330, 1220, 1355
BcuI	ACTAGT	1 cut(s)	1205
BfaI	CTAG	3 cut(s)	77, 852, 1206
BfmI	CTRYAG	1 cut(s)	1303
BfoI	RGCGCY	1 cut(s)	1161
BfuAI	ACCTGC	1 cut(s)	381
BfuI	GTATCC	1 cut(s)	637
BglII	AGATCT	2 cut(s)	1285, 2158
BmcAI	AGTACT	1 cut(s)	713
Bme1390I	CCNGG	5 cut(s)	90, 275, 1506, 2180, 2192
Bme18I	GGWCC	1 cut(s)	2188
BmgT120I	GGNCC	1 cut(s)	2188
BmiI	GGNNCC	6 cut(s)	7, 879, 894, 1486, 1875, 2189
BmrFI	CCNGG	5 cut(s)	90, 275, 1506, 2180, 2192
BmsI	GCATC	4 cut(s)	763, 952, 1407, 2020
BoxI	GACNNNNGTC	1 cut(s)	1427
BpiI	GAAGAC	1 cut(s)	2202
BpmI	CTGGAG	4 cut(s)	29, 55, 86, 2201
Bpu14I	TTCGAA	2 cut(s)	986, 1470
BpuEI	CTTGAG	2 cut(s)	703, 1265
BpuMI	CCSGG	2 cut(s)	90, 275
BsaAI	YACGTR	1 cut(s)	2116
BsaI	GGTCTC	1 cut(s)	1220
BsaJI	CCNNGG	2 cut(s)	942, 1505
BsaWI	WCCGGW	2 cut(s)	652, 2125
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 833, 863
Bsc4I	CCNNNNNNNGG	5 cut(s)	95, 1023, 1870, 1969, 2185
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	1084, 1543
Bse21I	CCTNAGG	1 cut(s)	882
Bse3DI	GCAATG	2 cut(s)	445, 1397
BseAI	TCCGGA	1 cut(s)	652
BseBI	CCWGG	3 cut(s)	1506, 2180, 2192
BseDI	CCNNGG	2 cut(s)	942, 1505
BseGI	GGATG	9 cut(s)	15, 529, 549, 558, 591, 815, 861, 910, 934
BseLI	CCNNNNNNNGG	5 cut(s)	95, 1023, 1870, 1969, 2185
BseMI	GCAATG	2 cut(s)	445, 1397
BseMII	CTCAG	2 cut(s)	1794, 1808
BseNI	ACTGG	2 cut(s)	1084, 1543
BsePI	GCGCGC	1 cut(s)	779
BseRI	GAGGAG	5 cut(s)	227, 495, 593, 689, 700
BseSI	GKGCMC	1 cut(s)	155
BseXI	GCAGC	8 cut(s)	193, 222, 738, 750, 1248, 1734, 2020, 2122
BseYI	CCCAGC	1 cut(s)	392
BsgI	GTGCAG	1 cut(s)	2129
Bsh1236I	CGCG	5 cut(s)	201, 411, 616, 781, 828
BshFI	GGCC	5 cut(s)	53, 125, 941, 1058, 1549
BshNI	GGYRCC	1 cut(s)	877
BsiHKAI	GWGCWC	5 cut(s)	41, 88, 155, 1041, 1741
BsiSI	CCGG	6 cut(s)	89, 239, 274, 653, 1146, 2126
BslFI	GGGAC	2 cut(s)	1023, 2201
BslI	CCNNNNNNNGG	5 cut(s)	95, 1023, 1870, 1969, 2185
BsmAI	GTCTC	3 cut(s)	330, 1220, 1355
BsmFI	GGGAC	2 cut(s)	1023, 2201
BsnI	GGCC	5 cut(s)	53, 125, 941, 1058, 1549
Bso31I	GGTCTC	1 cut(s)	1220
Bsp119I	TTCGAA	2 cut(s)	986, 1470
Bsp1286I	GDGCHC	5 cut(s)	41, 88, 155, 1041, 1741
Bsp13I	TCCGGA	1 cut(s)	652
Bsp143I	GATC	6 cut(s)	25, 1285, 1336, 1509, 1860, 2158
Bsp68I	TCGCGA	1 cut(s)	411
BspANI	GGCC	5 cut(s)	53, 125, 941, 1058, 1549
BspCNI	CTCAG	2 cut(s)	1793, 1807
BspEI	TCCGGA	1 cut(s)	652
BspFNI	CGCG	5 cut(s)	201, 411, 616, 781, 828
BspHI	TCATGA	1 cut(s)	757
BspLI	GGNNCC	6 cut(s)	7, 879, 894, 1486, 1875, 2189
BspMI	ACCTGC	1 cut(s)	381
BspPI	GGATC	2 cut(s)	1517, 1855
BspQI	GCTCTTC	1 cut(s)	428
BspT104I	TTCGAA	2 cut(s)	986, 1470
BspT107I	GGYRCC	1 cut(s)	877
BspTNI	GGTCTC	1 cut(s)	1220
BsrBI	CCGCTC	1 cut(s)	2014
BsrDI	GCAATG	2 cut(s)	445, 1397
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	1084, 1543
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	942, 1505
BssHII	GCGCGC	1 cut(s)	779
BssMI	GATC	6 cut(s)	25, 1285, 1336, 1509, 1860, 2158
BssT1I	CCWWGG	1 cut(s)	942
Bst2UI	CCWGG	3 cut(s)	1506, 2180, 2192
Bst4CI	ACNGT	5 cut(s)	223, 1404, 1522, 1528, 1891
Bst6I	CTCTTC	3 cut(s)	428, 1578, 2048
BstBAI	YACGTR	1 cut(s)	2116
BstBI	TTCGAA	2 cut(s)	986, 1470
BstC8I	GCNNGC	9 cut(s)	240, 731, 781, 785, 954, 977, 1266, 1317, 1547
BstDEI	CTNAG	5 cut(s)	882, 1532, 1780, 1794, 1832
BstENI	CCTNNNNNAGG	1 cut(s)	1868
BstF5I	GGATG	9 cut(s)	15, 529, 549, 558, 591, 815, 861, 910, 934
BstFNI	CGCG	5 cut(s)	201, 411, 616, 781, 828
BstH2I	RGCGCY	1 cut(s)	1161
BstHHI	GCGC	5 cut(s)	618, 781, 783, 1160, 2151
BstKTI	GATC	6 cut(s)	28, 1288, 1339, 1512, 1863, 2161
BstMAI	GTCTC	3 cut(s)	330, 1220, 1355
BstMBI	GATC	6 cut(s)	25, 1285, 1336, 1509, 1860, 2158
BstMWI	GCNNNNNNNGC	5 cut(s)	277, 760, 962, 1387, 2030
BstNI	CCWGG	3 cut(s)	1506, 2180, 2192
BstNSI	RCATGY	1 cut(s)	923
BstPAI	GACNNNNGTC	1 cut(s)	1427
BstSCI	CCNGG	5 cut(s)	88, 273, 1504, 2178, 2190
BstSFI	CTRYAG	1 cut(s)	1303
BstSLI	GKGCMC	1 cut(s)	155
BstUI	CGCG	5 cut(s)	201, 411, 616, 781, 828
BstV1I	GCAGC	8 cut(s)	193, 222, 738, 750, 1248, 1734, 2020, 2122
BstV2I	GAAGAC	1 cut(s)	2202
BstX2I	RGATCY	3 cut(s)	1285, 1860, 2158
BstXI	CCANNNNNNTGG	1 cut(s)	1714
BstYI	RGATCY	3 cut(s)	1285, 1860, 2158
Bsu36I	CCTNAGG	1 cut(s)	882
BsuI	GTATCC	1 cut(s)	637
BsuRI	GGCC	5 cut(s)	53, 125, 941, 1058, 1549
BtsCI	GGATG	9 cut(s)	15, 529, 549, 558, 591, 815, 861, 910, 934
BtuMI	TCGCGA	1 cut(s)	411
BveI	ACCTGC	1 cut(s)	381
Cac8I	GCNNGC	9 cut(s)	240, 731, 781, 785, 954, 977, 1266, 1317, 1547
CaiI	CAGNNNCTG	1 cut(s)	739
CciI	TCATGA	1 cut(s)	757
CfoI	GCGC	5 cut(s)	618, 781, 783, 1160, 2151
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	2188
Csp6I	GTAC	8 cut(s)	118, 196, 217, 355, 712, 878, 1461, 1855
CviAII	CATG	9 cut(s)	121, 758, 776, 920, 1043, 1358, 1760, 1845, 2089
CviQI	GTAC	8 cut(s)	118, 196, 217, 355, 712, 878, 1461, 1855
DdeI	CTNAG	5 cut(s)	882, 1532, 1780, 1794, 1832
DpnI	GATC	6 cut(s)	27, 1287, 1338, 1511, 1862, 2160
DpnII	GATC	6 cut(s)	25, 1285, 1336, 1509, 1860, 2158
EaeI	YGGCCR	2 cut(s)	123, 1547
Eam1104I	CTCTTC	3 cut(s)	428, 1578, 2048
EarI	CTCTTC	3 cut(s)	428, 1578, 2048
EciI	GGCGGA	1 cut(s)	584
Ecl136II	GAGCTC	3 cut(s)	39, 86, 1039
Eco130I	CCWWGG	1 cut(s)	942
Eco147I	AGGCCT	1 cut(s)	941
Eco24I	GRGCYC	3 cut(s)	41, 88, 1041
Eco31I	GGTCTC	1 cut(s)	1220
Eco47I	GGWCC	1 cut(s)	2188
Eco47III	AGCGCT	1 cut(s)	1159
Eco53kI	GAGCTC	3 cut(s)	39, 86, 1039
Eco57I	CTGAAG	5 cut(s)	88, 978, 1023, 1602, 2016
Eco72I	CACGTG	1 cut(s)	2116
Eco81I	CCTNAGG	1 cut(s)	882
EcoICRI	GAGCTC	3 cut(s)	39, 86, 1039
EcoNI	CCTNNNNNAGG	1 cut(s)	1868
EcoRI	GAATTC	1 cut(s)	1298
EcoRII	CCWGG	3 cut(s)	1504, 2178, 2190
EcoT14I	CCWWGG	1 cut(s)	942
EcoT38I	GRGCYC	3 cut(s)	41, 88, 1041
ErhI	CCWWGG	1 cut(s)	942
FaeI	CATG	9 cut(s)	124, 761, 779, 923, 1046, 1361, 1763, 1848, 2092
FaqI	GGGAC	2 cut(s)	1023, 2201
FatI	CATG	9 cut(s)	120, 757, 775, 919, 1042, 1357, 1759, 1844, 2088
FblI	GTMKAC	1 cut(s)	129
FokI	GGATG	9 cut(s)	2, 536, 556, 565, 598, 822, 868, 917, 941
FriOI	GRGCYC	3 cut(s)	41, 88, 1041
FspBI	CTAG	3 cut(s)	77, 852, 1206
GlaI	GCGC	5 cut(s)	617, 780, 782, 1159, 2150
GsaI	CCCAGC	1 cut(s)	396
GsuI	CTGGAG	4 cut(s)	29, 55, 86, 2201
HaeII	RGCGCY	1 cut(s)	1161
HaeIII	GGCC	5 cut(s)	53, 125, 941, 1058, 1549
HapII	CCGG	6 cut(s)	89, 239, 274, 653, 1146, 2126
HhaI	GCGC	5 cut(s)	618, 781, 783, 1160, 2151
Hin1II	CATG	9 cut(s)	124, 761, 779, 923, 1046, 1361, 1763, 1848, 2092
Hin6I	GCGC	5 cut(s)	616, 779, 781, 1158, 2149
HinP1I	GCGC	5 cut(s)	616, 779, 781, 1158, 2149
HindIII	AAGCTT	2 cut(s)	1313, 1774
HinfI	GANTC	9 cut(s)	203, 298, 803, 823, 1011, 1617, 1954, 2056, 2198
HpaII	CCGG	6 cut(s)	89, 239, 274, 653, 1146, 2126
HphI	GGTGA	9 cut(s)	298, 325, 442, 676, 842, 1006, 1399, 1798, 2002
Hpy166II	GTNNAC	7 cut(s)	130, 153, 219, 1190, 1400, 1407, 1838
Hpy188I	TCNGA	2 cut(s)	1341, 1783
Hpy8I	GTNNAC	7 cut(s)	130, 153, 219, 1190, 1400, 1407, 1838
HpyAV	CCTTC	9 cut(s)	43, 379, 421, 466, 661, 926, 1192, 1243, 1586
HpyCH4III	ACNGT	5 cut(s)	223, 1404, 1522, 1528, 1891
HpyCH4IV	ACGT	3 cut(s)	357, 2115, 2207
HpyCH4V	TGCA	9 cut(s)	153, 754, 1131, 1295, 1346, 1420, 1677, 2036, 2110
HpyF10VI	GCNNNNNNNGC	5 cut(s)	277, 760, 962, 1387, 2030
HpyF3I	CTNAG	5 cut(s)	882, 1532, 1780, 1794, 1832
HpySE526I	ACGT	3 cut(s)	357, 2115, 2207
Hsp92II	CATG	9 cut(s)	124, 761, 779, 923, 1046, 1361, 1763, 1848, 2092
HspAI	GCGC	5 cut(s)	616, 779, 781, 1158, 2149
Kpn2I	TCCGGA	1 cut(s)	652
KpnI	GGTACC	1 cut(s)	881
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Kzo9I	GATC	6 cut(s)	25, 1285, 1336, 1509, 1860, 2158
LguI	GCTCTTC	1 cut(s)	428
Lsp1109I	GCAGC	8 cut(s)	193, 222, 738, 750, 1248, 1734, 2020, 2122
LweI	GCATC	4 cut(s)	763, 952, 1407, 2020
MaeI	CTAG	3 cut(s)	77, 852, 1206
MaeII	ACGT	3 cut(s)	357, 2115, 2207
MaeIII	GTNAC	8 cut(s)	98, 922, 1277, 1429, 1522, 1553, 1891, 1990
MalI	GATC	6 cut(s)	27, 1287, 1338, 1511, 1862, 2160
MbiI	CCGCTC	1 cut(s)	2014
MboI	GATC	6 cut(s)	25, 1285, 1336, 1509, 1860, 2158
MboII	GAAGA	9 cut(s)	379, 445, 523, 971, 1595, 2009, 2065, 2168, 2207
MfeI	CAATTG	1 cut(s)	2037
MflI	RGATCY	3 cut(s)	1285, 1860, 2158
MhlI	GDGCHC	5 cut(s)	41, 88, 155, 1041, 1741
MlsI	TGGCCA	1 cut(s)	1549
MluNI	TGGCCA	1 cut(s)	1549
MlyI	GAGTC	4 cut(s)	212, 1005, 2065, 2192
MmeI	TCCRAC	4 cut(s)	189, 611, 870, 1462
Mox20I	TGGCCA	1 cut(s)	1549
MroI	TCCGGA	1 cut(s)	652
MroNI	GCCGGC	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	1549
MseI	TTAA	6 cut(s)	1500, 1572, 1772, 1869, 1929, 2142
MslI	CAYNNNNRTG	3 cut(s)	1436, 1843, 1910
Msp20I	TGGCCA	1 cut(s)	1549
MspA1I	CMGCKG	1 cut(s)	787
MspI	CCGG	6 cut(s)	89, 239, 274, 653, 1146, 2126
MspR9I	CCNGG	5 cut(s)	90, 275, 1506, 2180, 2192
MunI	CAATTG	1 cut(s)	2037
MvaI	CCWGG	3 cut(s)	1506, 2180, 2192
MvnI	CGCG	5 cut(s)	201, 411, 616, 781, 828
MwoI	GCNNNNNNNGC	5 cut(s)	277, 760, 962, 1387, 2030
NaeI	GCCGGC	1 cut(s)	240
NciI	CCSGG	2 cut(s)	90, 275
NdeII	GATC	6 cut(s)	25, 1285, 1336, 1509, 1860, 2158
NgoMIV	GCCGGC	1 cut(s)	238
NlaIII	CATG	9 cut(s)	124, 761, 779, 923, 1046, 1361, 1763, 1848, 2092
NlaIV	GGNNCC	6 cut(s)	7, 879, 894, 1486, 1875, 2189
NmuCI	GTSAC	4 cut(s)	98, 1277, 1429, 1990
NruI	TCGCGA	1 cut(s)	411
NspI	RCATGY	1 cut(s)	923
NspV	TTCGAA	2 cut(s)	986, 1470
OliI	CACNNNNGTG	1 cut(s)	1910
PagI	TCATGA	1 cut(s)	757
PauI	GCGCGC	1 cut(s)	779
PceI	AGGCCT	1 cut(s)	941
PciI	ACATGT	1 cut(s)	919
PciSI	GCTCTTC	1 cut(s)	428
PdiI	GCCGGC	1 cut(s)	240
PfeI	GAWTC	5 cut(s)	298, 803, 823, 1617, 1954
PfoI	TCCNGGA	1 cut(s)	273
PleI	GAGTC	4 cut(s)	211, 1005, 2064, 2192
PmaCI	CACGTG	1 cut(s)	2116
PmlI	CACGTG	1 cut(s)	2116
PpsI	GAGTC	4 cut(s)	211, 1005, 2064, 2192
Ppu21I	YACGTR	1 cut(s)	2116
PscI	ACATGT	1 cut(s)	919
PshAI	GACNNNNGTC	1 cut(s)	1427
Psp124BI	GAGCTC	3 cut(s)	41, 88, 1041
Psp6I	CCWGG	3 cut(s)	1504, 2178, 2190
PspCI	CACGTG	1 cut(s)	2116
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	3 cut(s)	1504, 2178, 2190
PspN4I	GGNNCC	6 cut(s)	7, 879, 894, 1486, 1875, 2189
PspPI	GGNCC	1 cut(s)	2188
PstNI	CAGNNNCTG	1 cut(s)	739
PsuI	RGATCY	3 cut(s)	1285, 1860, 2158
PteI	GCGCGC	1 cut(s)	779
PvuII	CAGCTG	1 cut(s)	787
RruI	TCGCGA	1 cut(s)	411
RsaI	GTAC	8 cut(s)	119, 197, 218, 356, 713, 879, 1462, 1856
RsaNI	GTAC	8 cut(s)	118, 196, 217, 355, 712, 878, 1461, 1855
RseI	CAYNNNNRTG	3 cut(s)	1436, 1843, 1910
SacI	GAGCTC	3 cut(s)	41, 88, 1041
SapI	GCTCTTC	1 cut(s)	428
SaqAI	TTAA	6 cut(s)	1500, 1572, 1772, 1869, 1929, 2142
Sau3AI	GATC	6 cut(s)	25, 1285, 1336, 1509, 1860, 2158
Sau96I	GGNCC	1 cut(s)	2188
ScaI	AGTACT	1 cut(s)	713
SchI	GAGTC	4 cut(s)	212, 1005, 2065, 2192
ScrFI	CCNGG	5 cut(s)	90, 275, 1506, 2180, 2192
SduI	GDGCHC	5 cut(s)	41, 88, 155, 1041, 1741
SfaNI	GCATC	4 cut(s)	763, 952, 1407, 2020
SfcI	CTRYAG	1 cut(s)	1303
SfuI	TTCGAA	2 cut(s)	986, 1470
SinI	GGWCC	1 cut(s)	2188
SmiMI	CAYNNNNRTG	3 cut(s)	1436, 1843, 1910
SmlI	CTYRAG	2 cut(s)	682, 1244
SmoI	CTYRAG	2 cut(s)	682, 1244
SpeI	ACTAGT	1 cut(s)	1205
SseBI	AGGCCT	1 cut(s)	941
SspI	AATATT	1 cut(s)	1030
SspMI	CTAG	3 cut(s)	77, 852, 1206
SstI	GAGCTC	3 cut(s)	41, 88, 1041
StuI	AGGCCT	1 cut(s)	941
StyD4I	CCNGG	5 cut(s)	88, 273, 1504, 2178, 2190
StyI	CCWWGG	1 cut(s)	942
TaaI	ACNGT	5 cut(s)	223, 1404, 1522, 1528, 1891
TaiI	ACGT	3 cut(s)	360, 2118, 2210
TaqI	TCGA	9 cut(s)	24, 576, 722, 986, 1154, 1470, 1512, 1922, 2059
TaqII	GACCGA	1 cut(s)	1078
TatI	WGTACW	4 cut(s)	117, 216, 711, 1854
TauI	GCSGC	2 cut(s)	96, 626
TfiI	GAWTC	5 cut(s)	298, 803, 823, 1617, 1954
Tru1I	TTAA	6 cut(s)	1500, 1572, 1772, 1869, 1929, 2142
Tru9I	TTAA	6 cut(s)	1500, 1572, 1772, 1869, 1929, 2142
TseFI	GTSAC	4 cut(s)	98, 1277, 1429, 1990
TseI	GCWGC	8 cut(s)	181, 235, 726, 763, 1261, 1747, 2033, 2110
Tsp45I	GTSAC	4 cut(s)	98, 1277, 1429, 1990
TspDTI	ATGAA	6 cut(s)	764, 945, 1094, 1649, 1992, 2066
TspGWI	ACGGA	1 cut(s)	941
VneI	GTGCAC	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	2188
XagI	CCTNNNNNAGG	1 cut(s)	1868
XapI	RAATTY	2 cut(s)	1298, 2064
XbaI	TCTAGA	1 cut(s)	76
XceI	RCATGY	1 cut(s)	923
XcmI	CCANNNNNNNNNTGG	3 cut(s)	61, 118, 1816
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	3 cut(s)	77, 852, 1206
ZrmI	AGTACT	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.