Rorug04G0175000

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
30730848 .. 30731475
628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0175000.1

Sequence Viewer

Length: 477 bp
ATGGACAGCCAAAATGTTGGTTACCATCCATGTCTGAAGCCAGCTGTTGTTATAACTGGAACAGCAAATGAAGGTACTGCTGGACCAGCTATTGGTCATGTTGACATTGGCGTGAGTGATGCTGCCTACTTATTTCGAGTTGCACTTCCAGGTCTTCGGAGGAAACAAAGTACAGTGAAATGTATGATTGAAAGTGACGGGAAGGTTCATATTGAAGGAGTCATGACAGAGACTGGACTTGTCATAAACTCATCAACTGTGTACCAGATGAAAGTCCAGCAACTATGCGCAGCAGGACCATTTACCATCTCTTTTAATCTTCCTGGATCTGTTGATACTCGACTGTTTTCTCCTGTCTTTCGGCCAGATGGAATCCTGGAAGTGGTGGTTTTGAAATCCAAAATGTCTTCAGAATTCCTCTATCCATTTGATGGCGACAAGTCTTCCCCTGTCAAGTTTCCCCAAGTAACCGTCTGA

Protein Analysis

158

Amino Acids

16.95

Weight (kDa)

6.81

Isoelectric Point (pI)

55.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 53
Acc16I TGCGCA 1 cut(s) 289
AccB7I CCANNNNNTGG 2 cut(s) 92, 431
AclWI GGATC 1 cut(s) 334
AcoI YGGCCR 1 cut(s) 362
AcsI RAATTY 1 cut(s) 413
AcuI CTGAAG 2 cut(s) 56, 393
AfaI GTAC 3 cut(s) 76, 172, 263
AfiI CCNNNNNNNGG 3 cut(s) 92, 382, 431
AgsI TTSAA 3 cut(s) 191, 215, 394
AjnI CCWGG 3 cut(s) 148, 322, 375
AluBI AGCT 2 cut(s) 44, 89
AluI AGCT 2 cut(s) 44, 89
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 1 cut(s) 334
AlwNI CAGNNNCTG 1 cut(s) 233
AoxI GGCC 1 cut(s) 362
ApeKI GCWGC 2 cut(s) 122, 290
ApoI RAATTY 1 cut(s) 413
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 2 cut(s) 83, 296
AvaII GGWCC 2 cut(s) 83, 296
BbsI GAAGAC 3 cut(s) 146, 399, 435
BbvI GCAGC 2 cut(s) 109, 302
BccI CCATC 4 cut(s) 33, 314, 362, 425
BciT130I CCWGG 3 cut(s) 150, 324, 377
BcoDI GTCTC 1 cut(s) 224
BisI GCNGC 2 cut(s) 123, 291
BlsI GCNGC 2 cut(s) 124, 292
Bme1390I CCNGG 3 cut(s) 150, 324, 377
Bme18I GGWCC 2 cut(s) 83, 296
BmgT120I GGNCC 2 cut(s) 83, 296
BmrFI CCNGG 3 cut(s) 150, 324, 377
BmsI GCATC 1 cut(s) 109
BpiI GAAGAC 3 cut(s) 146, 399, 435
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 382, 431
Bse1I ACTGG 2 cut(s) 61, 238
BseBI CCWGG 3 cut(s) 150, 324, 377
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 3 cut(s) 92, 382, 431
BseNI ACTGG 2 cut(s) 61, 238
BseXI GCAGC 2 cut(s) 109, 302
BshFI GGCC 1 cut(s) 364
BslI CCNNNNNNNGG 3 cut(s) 92, 382, 431
BsmAI GTCTC 1 cut(s) 224
BsnI GGCC 1 cut(s) 364
Bsp143I GATC 1 cut(s) 326
BspANI GGCC 1 cut(s) 364
BspHI TCATGA 1 cut(s) 222
BspPI GGATC 1 cut(s) 334
BsrI ACTGG 2 cut(s) 61, 238
BssMI GATC 1 cut(s) 326
Bst2UI CCWGG 3 cut(s) 150, 324, 377
Bst4CI ACNGT 4 cut(s) 175, 259, 345, 472
BstC8I GCNNGC 1 cut(s) 42
BstEII GGTNACC 1 cut(s) 20
BstF5I GGATG 1 cut(s) 25
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 1 cut(s) 329
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 1 cut(s) 326
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 3 cut(s) 150, 324, 377
BstPI GGTNACC 1 cut(s) 20
BstSCI CCNGG 3 cut(s) 148, 322, 375
BstV1I GCAGC 2 cut(s) 109, 302
BstV2I GAAGAC 3 cut(s) 146, 399, 435
BstX2I RGATCY 1 cut(s) 326
BstXI CCANNNNNNTGG 1 cut(s) 17
BstYI RGATCY 1 cut(s) 326
BsuRI GGCC 1 cut(s) 364
BtsCI GGATG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 42
CaiI CAGNNNCTG 1 cut(s) 233
CciI TCATGA 1 cut(s) 222
CfoI GCGC 1 cut(s) 290
Cfr13I GGNCC 2 cut(s) 83, 296
Csp6I GTAC 3 cut(s) 75, 171, 262
CviAII CATG 3 cut(s) 30, 98, 223
CviJI RGCY 5 cut(s) 9, 40, 44, 89, 364
CviKI_1 RGCY 5 cut(s) 9, 40, 44, 89, 364
CviQI GTAC 3 cut(s) 75, 171, 262
DpnI GATC 1 cut(s) 328
DpnII GATC 1 cut(s) 326
EaeI YGGCCR 1 cut(s) 362
Eco47I GGWCC 2 cut(s) 83, 296
Eco57I CTGAAG 2 cut(s) 56, 393
Eco91I GGTNACC 1 cut(s) 20
EcoO65I GGTNACC 1 cut(s) 20
EcoRI GAATTC 1 cut(s) 413
EcoRII CCWGG 3 cut(s) 148, 322, 375
FaeI CATG 3 cut(s) 33, 101, 226
FaiI YATR 8 cut(s) 31, 53, 99, 185, 210, 224, 245, 286
FatI CATG 3 cut(s) 29, 97, 222
Fnu4HI GCNGC 2 cut(s) 123, 291
FokI GGATG 1 cut(s) 12
Fsp4HI GCNGC 2 cut(s) 123, 291
FspI TGCGCA 1 cut(s) 289
GlaI GCGC 1 cut(s) 289
GluI GCNGC 2 cut(s) 123, 291
HaeIII GGCC 1 cut(s) 364
HhaI GCGC 1 cut(s) 290
Hin1II CATG 3 cut(s) 33, 101, 226
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 2 cut(s) 219, 372
Hpy166II GTNNAC 2 cut(s) 103, 262
Hpy188I TCNGA 4 cut(s) 36, 159, 412, 476
Hpy188III TCNNGA 1 cut(s) 223
Hpy8I GTNNAC 2 cut(s) 103, 262
HpyAV CCTTC 3 cut(s) 65, 196, 209
HpyCH4III ACNGT 4 cut(s) 175, 259, 345, 472
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
Hsp92II CATG 3 cut(s) 33, 101, 226
HspAI GCGC 1 cut(s) 288
Kzo9I GATC 1 cut(s) 326
Lsp1109I GCAGC 2 cut(s) 109, 302
LweI GCATC 1 cut(s) 109
MaeIII GTNAC 3 cut(s) 20, 194, 466
MalI GATC 1 cut(s) 328
MboI GATC 1 cut(s) 326
MboII GAAGA 4 cut(s) 146, 311, 399, 435
MflI RGATCY 1 cut(s) 326
MluCI AATT 1 cut(s) 413
MlyI GAGTC 1 cut(s) 228
MnlI CCTC 2 cut(s) 153, 428
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 44
MspR9I CCNGG 3 cut(s) 150, 324, 377
MvaI CCWGG 3 cut(s) 150, 324, 377
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 1 cut(s) 326
NlaIII CATG 3 cut(s) 33, 101, 226
NmuCI GTSAC 1 cut(s) 194
NsbI TGCGCA 1 cut(s) 289
PagI TCATGA 1 cut(s) 222
PfeI GAWTC 1 cut(s) 372
PflMI CCANNNNNTGG 2 cut(s) 92, 431
PfoI TCCNGGA 2 cut(s) 322, 375
PkrI GCNGC 2 cut(s) 124, 292
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PsiI TTATAA 1 cut(s) 53
Psp6I CCWGG 3 cut(s) 148, 322, 375
PspEI GGTNACC 1 cut(s) 20
PspGI CCWGG 3 cut(s) 148, 322, 375
PspPI GGNCC 2 cut(s) 83, 296
PstNI CAGNNNCTG 1 cut(s) 233
PsuI RGATCY 1 cut(s) 326
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 3 cut(s) 76, 172, 263
RsaNI GTAC 3 cut(s) 75, 171, 262
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 2 cut(s) 123, 291
Sau3AI GATC 1 cut(s) 326
Sau96I GGNCC 2 cut(s) 83, 296
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 3 cut(s) 150, 324, 377
SetI ASST 5 cut(s) 46, 76, 91, 154, 207
SfaNI GCATC 1 cut(s) 109
SinI GGWCC 2 cut(s) 83, 296
SmiMI CAYNNNNRTG 1 cut(s) 110
Sse9I AATT 1 cut(s) 413
StyD4I CCNGG 3 cut(s) 148, 322, 375
TaaI ACNGT 4 cut(s) 175, 259, 345, 472
TaqI TCGA 2 cut(s) 136, 340
TasI AATT 1 cut(s) 413
TatI WGTACW 1 cut(s) 170
TfiI GAWTC 1 cut(s) 372
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 2 cut(s) 122, 290
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 3 cut(s) 84, 197, 284
TspRI CASTG 1 cut(s) 180
Van91I CCANNNNNTGG 2 cut(s) 92, 431
VpaK11BI GGWCC 2 cut(s) 83, 296
XapI RAATTY 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.