Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000162

Physical Location & Seq

Genomic Coordinates Reverse (-)

22073600 .. 22074317

Gene Structure 718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18296

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCATACTCCCTCTCCTTACTGCATTTTTGTTGTAGCTGGGGAATATGGAACAGTTCTTTTCACATCGACGGATCGCAATTTCATCGAGTTTGATGAAGGATGGGAGTTTCTGCAGAAGGGGATCACAAAGTTGAAGAGGATCGTAGAAGGGATGCCAGAAACTCAGTTCAGCTCAGAAGATTATATGAATCTCTACACGACTGTTTACAAATTGTGTACTCAGGATCCCCTTAATGATTACTCTCAACAGCTTTATGACAAATATCGGGAGACATTTGAGGTTTACATTACTTCAACGGTGCTTCCTTCTCTACGAGAGAAGCCTGAAGAGTCGATGCTGCAGGAACTTGTCAAAAGATGGACAAATCATAAAGTTATGGCATGGTGGCTGTCACGCTTCTTTCATTTTCTCGATCGCTACTTCATCACGAGGAGGTCGCTTCCCTCTCTAAATGAAGTTGCCCTTATCTCCTTCCGTGATTTGGTTTATCATGAAGTGAATGCTAATGCCAGAGTTGCTGTGATTGATCTCATCTGCAAAGAACGTGAAGGAGAGCAGATTGATAGAGAGCTAGTGAAGAATGTGGTAGACATGACTTGGAAGCTCACATGCTGGAAAACACTGGCGATTACTATTCTCTTAAAGCGTCGAGTTGGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000228 GO:0000793 GO:0000794 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009524 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010154 GO:0015630 GO:0019899 GO:0022414 GO:0023052 GO:0031461 GO:0031625 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0099402 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Cullin Cullin_Nedd8

Protein Analysis

221

Amino Acids

26.32

Weight (kDa)

6.13

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin	PF00888	35 - 203	1.6e-32	Cullin alpha solenoid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca	FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica	MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica	Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis	pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis	RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata	RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora	Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa	Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha	Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana	Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	591
AclWI	GGATC	5 cut(s)	81, 131, 149, 221, 234
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	484
AgsI	TTSAA	2 cut(s)	136, 297
AluBI	AGCT	5 cut(s)	38, 174, 253, 574, 607
AluI	AGCT	5 cut(s)	38, 174, 253, 574, 607
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	5 cut(s)	81, 131, 149, 221, 234
ApeKI	GCWGC	1 cut(s)	340
BamHI	GGATCC	1 cut(s)	226
BauI	CACGAG	1 cut(s)	430
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	2 cut(s)	96, 354
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	2 cut(s)	575, 664
BfmI	CTRYAG	2 cut(s)	113, 341
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
BmiI	GGNNCC	1 cut(s)	228
BmsI	GCATC	2 cut(s)	144, 327
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse1I	ACTGG	1 cut(s)	630
BseGI	GGATG	2 cut(s)	107, 159
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseMII	CTCAG	3 cut(s)	179, 189, 236
BseNI	ACTGG	1 cut(s)	630
BseRI	GAGGAG	1 cut(s)	448
BseXI	GCAGC	1 cut(s)	327
BseYI	CCCAGC	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	418
BsiEI	CGRYCG	1 cut(s)	418
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmAI	GTCTC	1 cut(s)	266
BsmI	GAATGC	1 cut(s)	508
Bsp143I	GATC	6 cut(s)	73, 123, 141, 226, 415, 529
BspCNI	CTCAG	3 cut(s)	178, 188, 235
BspHI	TCATGA	1 cut(s)	493
BspLI	GGNNCC	1 cut(s)	228
BspMAI	CTGCAG	2 cut(s)	117, 345
BspPI	GGATC	5 cut(s)	81, 131, 149, 221, 234
BsrI	ACTGG	1 cut(s)	630
BssMI	GATC	6 cut(s)	73, 123, 141, 226, 415, 529
BssSI	CACGAG	1 cut(s)	430
Bst2BI	CACGAG	1 cut(s)	430
Bst4CI	ACNGT	3 cut(s)	55, 205, 301
Bst6I	CTCTTC	2 cut(s)	131, 324
BstDEI	CTNAG	3 cut(s)	165, 175, 222
BstF5I	GGATG	2 cut(s)	107, 159
BstKTI	GATC	6 cut(s)	76, 126, 144, 229, 418, 532
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	6 cut(s)	73, 123, 141, 226, 415, 529
BstMCI	CGRYCG	1 cut(s)	418
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstNSI	RCATGY	1 cut(s)	615
BstSFI	CTRYAG	2 cut(s)	113, 341
BstV1I	GCAGC	1 cut(s)	327
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BtsCI	GGATG	2 cut(s)	107, 159
BtsIMutI	CAGTG	1 cut(s)	623
CciI	TCATGA	1 cut(s)	493
CseI	GACGC	1 cut(s)	638
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	4 cut(s)	384, 494, 595, 612
CviJI	RGCY	7 cut(s)	38, 174, 253, 325, 391, 574, 607
CviKI_1	RGCY	7 cut(s)	38, 174, 253, 325, 391, 574, 607
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	3 cut(s)	165, 175, 222
DpnI	GATC	6 cut(s)	75, 125, 143, 228, 417, 531
DpnII	GATC	6 cut(s)	73, 123, 141, 226, 415, 529
Eam1104I	CTCTTC	2 cut(s)	131, 324
EarI	CTCTTC	2 cut(s)	131, 324
Eco57I	CTGAAG	1 cut(s)	348
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	387, 497, 598, 615
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FatI	CATG	4 cut(s)	383, 493, 594, 611
FblI	GTMKAC	1 cut(s)	591
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	2 cut(s)	114, 166
Fsp4HI	GCNGC	1 cut(s)	341
FspBI	CTAG	2 cut(s)	575, 664
GluI	GCNGC	1 cut(s)	341
GsaI	CCCAGC	1 cut(s)	42
HgaI	GACGC	1 cut(s)	638
Hin1II	CATG	4 cut(s)	387, 497, 598, 615
HinfI	GANTC	2 cut(s)	190, 332
Hpy166II	GTNNAC	4 cut(s)	208, 219, 286, 592
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	5 cut(s)	224, 269, 413, 430, 494
Hpy8I	GTNNAC	4 cut(s)	208, 219, 286, 592
Hpy99I	CGWCG	2 cut(s)	73, 654
HpyAV	CCTTC	6 cut(s)	92, 112, 143, 318, 484, 545
HpyCH4III	ACNGT	3 cut(s)	55, 205, 301
HpyCH4IV	ACGT	1 cut(s)	547
HpyCH4V	TGCA	5 cut(s)	4, 24, 115, 343, 540
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	3 cut(s)	165, 175, 222
HpySE526I	ACGT	1 cut(s)	547
Hsp92II	CATG	4 cut(s)	387, 497, 598, 615
Kzo9I	GATC	6 cut(s)	73, 123, 141, 226, 415, 529
LpnPI	CCDG	8 cut(s)	24, 171, 209, 329, 339, 526, 601, 611
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	2 cut(s)	144, 327
MaeI	CTAG	2 cut(s)	575, 664
MaeII	ACGT	1 cut(s)	547
MaeIII	GTNAC	1 cut(s)	393
MalI	GATC	6 cut(s)	75, 125, 143, 228, 417, 531
MboI	GATC	6 cut(s)	73, 123, 141, 226, 415, 529
MboII	GAAGA	4 cut(s)	148, 191, 341, 592
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	2 cut(s)	79, 212
MlyI	GAGTC	1 cut(s)	341
MnlI	CCTC	6 cut(s)	22, 132, 274, 426, 429, 457
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	234, 644
Mva1269I	GAATGC	1 cut(s)	508
MwoI	GCNNNNNNNGC	1 cut(s)	518
NdeII	GATC	6 cut(s)	73, 123, 141, 226, 415, 529
NlaIII	CATG	4 cut(s)	387, 497, 598, 615
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	393
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	615
PagI	TCATGA	1 cut(s)	493
PctI	GAATGC	1 cut(s)	508
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	342
Ple19I	CGATCG	1 cut(s)	418
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	228
PstI	CTGCAG	2 cut(s)	117, 345
PsuI	RGATCY	1 cut(s)	226
PvuI	CGATCG	1 cut(s)	418
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	234, 644
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	6 cut(s)	73, 123, 141, 226, 415, 529
SchI	GAGTC	1 cut(s)	341
SetI	ASST	8 cut(s)	40, 176, 255, 285, 440, 550, 576, 609
SfaNI	GCATC	2 cut(s)	144, 327
SfcI	CTRYAG	2 cut(s)	113, 341
Sse9I	AATT	2 cut(s)	79, 212
SspMI	CTAG	2 cut(s)	575, 664
TaaI	ACNGT	3 cut(s)	55, 205, 301
TaiI	ACGT	1 cut(s)	550
TaqI	TCGA	5 cut(s)	68, 87, 335, 414, 652
TasI	AATT	2 cut(s)	79, 212
TatI	WGTACW	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	2 cut(s)	234, 644
Tru9I	TTAA	2 cut(s)	234, 644
TscAI	CASTG	1 cut(s)	630
TseFI	GTSAC	1 cut(s)	393
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	1 cut(s)	393
TspDTI	ATGAA	7 cut(s)	73, 111, 203, 395, 415, 471, 510
TspGWI	ACGGA	2 cut(s)	86, 467
TspRI	CASTG	1 cut(s)	630
XceI	RCATGY	1 cut(s)	615
XmiI	GTMKAC	1 cut(s)	591
XspI	CTAG	2 cut(s)	575, 664
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.