Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000162

Physical Location & Seq

Genomic Coordinates Forward (+)

7715398 .. 7718388

Gene Structure 2991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G063200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGGTTACCAATTTATCGAGTGGGATCAAGGATGGGACTATATACAGAAGGGGATCACGAAGCTAAAGAGGATTGTACAAGGATTATCAGAACCGCAGTTCAACTCAGAAGAATATATGAGGCTTTACACAACTATCTATAACATGTGTATCCAAAAACATCCCCATAATTATTCTCGGCAGCTTTATGACAAATATCGGGAGACATTTGAGGAATACATTACTTCAACAGTGTTGCCCTCTGTAATAGAGAAACATGGTGAGTGTATGCTGCAGGAGTTTGTCAAATGTTGGGAAAATCATAAGATTATGATTAGGTGGCTGTCACGATTCTTTAGTTTTCTTGATGACTACTACATCGCTCAAAATCACGCATCACATCCTGGGCTGAATGAAGTTGGACTTAACTGCTTCCGTAATATGGTTTATCAGAAGGTAAATGCTAATGTGAGATTTTCTGTACTTGTTCTTATTGGTAAAGAACGTGAAGGAGAACAAATTGATAGAGCACTGTTGAAGAATGTGATAGATATATTTGTTGAAATTGGAATGGGACATATGGATGCTTATGAAAATGACTTTGAAGGATACATGCTAATTGACACTCGTGATTACTATTCTCATAAAGCATCAATATGGATTTGGGAGGACACATATACGAATTACATGTTGAAGGCAGAGGAATGCTTGAGAAGGGAGAGGGATAGAGTTTCTCATTACCTGCATCCAAGCAGTGAGAAGAAGCTGGTAGAGAATGTGAAACATTGGTTGGTGGTGGTAAATGTAACTCAACTGATTGAAAAGAAGCATTCTGAATCTGGATGTAGTGCTTGGCTTACAGTTGATAATGTGGAGGAGCTTTCTAGGAAATTTATTGCTAATGTTATATTGGAACAAGAAGTTCCTGCTCAAGGTTCGACCTTGGTTCAACAGGCTGAAGATGCCGCAATGCAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000228 GO:0000793 GO:0000794 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009524 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010154 GO:0015630 GO:0019899 GO:0022414 GO:0023052 GO:0031461 GO:0031625 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0099402 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Cullin Cullin_Nedd8

Protein Analysis

320

Amino Acids

37.86

Weight (kDa)

5.52

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca	FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica	MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica	Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis	pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis	RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata	RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora	Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa	Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha	Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana	Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	729
AciI	CCGC	2 cut(s)	95, 945
AclWI	GGATC	2 cut(s)	33, 62
AcsI	RAATTY	1 cut(s)	869
AcuI	CTGAAG	1 cut(s)	957
AfaI	GTAC	2 cut(s)	78, 462
AfiI	CCNNNNNNNGG	2 cut(s)	421, 911
AflIII	ACRYGT	2 cut(s)	144, 666
AgsI	TTSAA	8 cut(s)	103, 228, 517, 542, 584, 673, 800, 929
AjnI	CCWGG	1 cut(s)	382
AjuI	GAANNNNNNNTTGG	2 cut(s)	752, 784
AluBI	AGCT	4 cut(s)	64, 184, 745, 859
AluI	AGCT	4 cut(s)	64, 184, 745, 859
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	2 cut(s)	33, 62
ApeKI	GCWGC	2 cut(s)	181, 271
ApoI	RAATTY	1 cut(s)	869
AsuHPI	GGTGA	1 cut(s)	272
BaeI	ACNNNNGTAYC	2 cut(s)	133, 166
BauI	CACGAG	1 cut(s)	606
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	2 cut(s)	193, 258
BccI	CCATC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	384
BciVI	GTATCC	2 cut(s)	161, 581
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	864
BfmI	CTRYAG	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	729
BfuI	GTATCC	2 cut(s)	161, 581
BisI	GCNGC	3 cut(s)	182, 272, 945
BlsI	GCNGC	3 cut(s)	183, 273, 946
Bme1390I	CCNGG	1 cut(s)	384
BmrFI	CCNGG	1 cut(s)	384
BmsI	GCATC	5 cut(s)	383, 553, 638, 733, 931
BpuEI	CTTGAG	2 cut(s)	709, 894
BsaJI	CCNNGG	2 cut(s)	383, 921
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 911
Bse3DI	GCAATG	1 cut(s)	954
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	2 cut(s)	383, 921
BseGI	GGATG	6 cut(s)	38, 160, 379, 568, 724, 827
BseLI	CCNNNNNNNGG	2 cut(s)	421, 911
BseMI	GCAATG	1 cut(s)	954
BseMII	CTCAG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	869
BseXI	GCAGC	2 cut(s)	193, 258
BsiHKAI	GWGCWC	1 cut(s)	511
BslFI	GGGAC	2 cut(s)	50, 567
BslI	CCNNNNNNNGG	2 cut(s)	421, 911
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	2 cut(s)	50, 567
BsmI	GAATGC	2 cut(s)	689, 808
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp1407I	TGTACA	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	25, 54
BspACI	CCGC	2 cut(s)	95, 945
BspCNI	CTCAG	1 cut(s)	119
BspMAI	CTGCAG	1 cut(s)	276
BspMI	ACCTGC	1 cut(s)	729
BspPI	GGATC	2 cut(s)	33, 62
BsrDI	GCAATG	1 cut(s)	954
BsrGI	TGTACA	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	383, 921
BssMI	GATC	2 cut(s)	25, 54
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	1 cut(s)	921
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	3 cut(s)	232, 513, 841
BstAUI	TGTACA	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	106
BstEII	GGTNACC	1 cut(s)	5
BstENI	CCTNNNNNAGG	1 cut(s)	909
BstF5I	GGATG	6 cut(s)	38, 160, 379, 568, 724, 827
BstKTI	GATC	2 cut(s)	28, 57
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	2 cut(s)	25, 54
BstMWI	GCNNNNNNNGC	1 cut(s)	941
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	3 cut(s)	148, 595, 670
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	1 cut(s)	382
BstSFI	CTRYAG	1 cut(s)	272
BstV1I	GCAGC	2 cut(s)	193, 258
BsuI	GTATCC	2 cut(s)	161, 581
BtgZI	GCGATG	1 cut(s)	343
BtsCI	GGATG	6 cut(s)	38, 160, 379, 568, 724, 827
BtsI	GCAGTG	1 cut(s)	739
BtsIMutI	CAGTG	3 cut(s)	237, 509, 739
BveI	ACCTGC	1 cut(s)	729
Csp6I	GTAC	2 cut(s)	77, 461
CviAII	CATG	4 cut(s)	145, 257, 592, 667
CviJI	RGCY	9 cut(s)	64, 124, 184, 322, 388, 745, 835, 859, 935
CviKI_1	RGCY	9 cut(s)	64, 124, 184, 322, 388, 745, 835, 859, 935
CviQI	GTAC	2 cut(s)	77, 461
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	2 cut(s)	27, 56
DpnII	GATC	2 cut(s)	25, 54
Eco130I	CCWWGG	1 cut(s)	921
Eco57I	CTGAAG	1 cut(s)	957
Eco91I	GGTNACC	1 cut(s)	5
EcoNI	CCTNNNNNAGG	1 cut(s)	909
EcoO65I	GGTNACC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	921
ErhI	CCWWGG	1 cut(s)	921
FaeI	CATG	4 cut(s)	148, 260, 595, 670
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FaqI	GGGAC	2 cut(s)	50, 567
FatI	CATG	4 cut(s)	144, 256, 591, 666
FauNDI	CATATG	1 cut(s)	558
Fnu4HI	GCNGC	3 cut(s)	182, 272, 945
FokI	GGATG	6 cut(s)	45, 147, 366, 575, 711, 834
Fsp4HI	GCNGC	3 cut(s)	182, 272, 945
FspBI	CTAG	1 cut(s)	864
GluI	GCNGC	3 cut(s)	182, 272, 945
Hin1II	CATG	4 cut(s)	148, 260, 595, 670
HinfI	GANTC	2 cut(s)	330, 815
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	4 cut(s)	91, 109, 432, 814
Hpy188III	TCNNGA	6 cut(s)	58, 200, 327, 344, 608, 819
HpyAV	CCTTC	6 cut(s)	43, 427, 482, 578, 667, 687
HpyCH4III	ACNGT	3 cut(s)	232, 513, 841
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	3 cut(s)	274, 724, 952
HpyF10VI	GCNNNNNNNGC	1 cut(s)	941
HpyF3I	CTNAG	1 cut(s)	106
HpySE526I	ACGT	1 cut(s)	484
Hsp92II	CATG	4 cut(s)	148, 260, 595, 670
Kzo9I	GATC	2 cut(s)	25, 54
LmnI	GCTCC	1 cut(s)	856
LpnPI	CCDG	9 cut(s)	260, 369, 396, 731, 734, 804, 917, 918, 938
Lsp1109I	GCAGC	2 cut(s)	193, 258
LweI	GCATC	5 cut(s)	383, 553, 638, 733, 931
MaeI	CTAG	1 cut(s)	864
MaeII	ACGT	1 cut(s)	484
MaeIII	GTNAC	3 cut(s)	5, 324, 784
MalI	GATC	2 cut(s)	27, 56
MboI	GATC	2 cut(s)	25, 54
MboII	GAAGA	4 cut(s)	122, 529, 751, 950
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	7 cut(s)	11, 169, 498, 543, 597, 661, 869
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	8 cut(s)	63, 114, 205, 250, 640, 673, 693, 847
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	2 cut(s)	561, 634
MspR9I	CCNGG	1 cut(s)	384
Mva1269I	GAATGC	2 cut(s)	689, 808
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	941
NdeI	CATATG	1 cut(s)	558
NdeII	GATC	2 cut(s)	25, 54
NlaIII	CATG	4 cut(s)	148, 260, 595, 670
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	324
NspI	RCATGY	3 cut(s)	148, 595, 670
PciI	ACATGT	2 cut(s)	144, 666
PctI	GAATGC	2 cut(s)	689, 808
PfeI	GAWTC	2 cut(s)	330, 815
PkrI	GCNGC	3 cut(s)	183, 273, 946
PscI	ACATGT	2 cut(s)	144, 666
Psp6I	CCWGG	1 cut(s)	382
PspEI	GGTNACC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	382
PstI	CTGCAG	1 cut(s)	276
RsaI	GTAC	2 cut(s)	78, 462
RsaNI	GTAC	2 cut(s)	77, 461
RseI	CAYNNNNRTG	2 cut(s)	561, 634
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	3 cut(s)	182, 272, 945
Sau3AI	GATC	2 cut(s)	25, 54
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	5 cut(s)	383, 553, 638, 733, 931
SfcI	CTRYAG	1 cut(s)	272
SmiMI	CAYNNNNRTG	2 cut(s)	561, 634
SmlI	CTYRAG	2 cut(s)	688, 909
SmoI	CTYRAG	2 cut(s)	688, 909
Sse9I	AATT	7 cut(s)	11, 169, 498, 543, 597, 661, 869
SsiI	CCGC	2 cut(s)	95, 945
SspMI	CTAG	1 cut(s)	864
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	1 cut(s)	921
TaaI	ACNGT	3 cut(s)	232, 513, 841
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	2 cut(s)	18, 917
TasI	AATT	7 cut(s)	11, 169, 498, 543, 597, 661, 869
TatI	WGTACW	2 cut(s)	76, 460
TauI	GCSGC	1 cut(s)	947
TfiI	GAWTC	2 cut(s)	330, 815
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	3 cut(s)	237, 516, 739
TseFI	GTSAC	1 cut(s)	324
TseI	GCWGC	2 cut(s)	181, 271
Tsp45I	GTSAC	1 cut(s)	324
TspDTI	ATGAA	2 cut(s)	408, 585
TspGWI	ACGGA	1 cut(s)	404
TspRI	CASTG	3 cut(s)	237, 516, 739
XagI	CCTNNNNNAGG	1 cut(s)	909
XapI	RAATTY	1 cut(s)	869
XceI	RCATGY	3 cut(s)	148, 595, 670
XspI	CTAG	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.