Rorug07G0083100

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
6572385 .. 6572872
488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0083100.1

Sequence Viewer

Length: 429 bp
ATGTCCTCCGATCCTGATTTCCCGCCGGCCCAGTTCGTCACCATCCACGAAGAAGACGACGAAGACTTTGACTGCGAAGACGACATCTTTTCCCAGTACCATTCCACAATCCACGCCGAGCGGAACCGCGATGACATCGTTTCAGAGCCCAATTCCATTTCCAACACCGACGATTTGTCGTCGGACCGCGAGAACCAGGTCAATTTCGTTATGGATCGGTTCCAACAGCGCGTCGAGCAGTCTCAGGTAACAGCCCGTTCCGTTTTGGTCTCCGACGACTCCGATTTTGGGGTTGTGGAGGGGAATTGTGACATGGAGGCTCTGGGCTCGAGCTCCCGGAGGACGTCAGCGACAACATCAACCACTACTTCCGGTCCCGGGTCTGCAGTCGGAAAGATGGGAGAAGATGACATGGTAACGGGACAGTGA

Protein Analysis

142

Amino Acids

15.61

Weight (kDa)

4.05

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 347
AccBSI CCGCTC 1 cut(s) 121
AccII CGCG 3 cut(s) 129, 189, 231
AciI CCGC 4 cut(s) 23, 121, 127, 187
AclWI GGATC 2 cut(s) 5, 222
AcyI GRCGYC 1 cut(s) 344
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 288, 378
AhdI GACNNNNNGTC 1 cut(s) 175
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 1 cut(s) 333
AluI AGCT 1 cut(s) 333
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 2 cut(s) 246, 274
AlwI GGATC 2 cut(s) 5, 222
Ama87I CYCGRG 2 cut(s) 328, 377
AoxI GGCC 1 cut(s) 27
ArsI GACNNNNNNTTYG 4 cut(s) 50, 82, 269, 301
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 3 cut(s) 28, 184, 374
AsuC2I CCSGG 3 cut(s) 337, 378, 379
AsuHPI GGTGA 1 cut(s) 31
AvaI CYCGRG 2 cut(s) 328, 377
AvaII GGWCC 2 cut(s) 184, 374
BanII GRGCYC 3 cut(s) 150, 329, 335
BbsI GAAGAC 3 cut(s) 60, 69, 84
Bbv12I GWGCWC 1 cut(s) 335
BccI CCATC 2 cut(s) 50, 391
BciT130I CCWGG 1 cut(s) 197
BcnI CCSGG 3 cut(s) 337, 378, 379
BcoDI GTCTC 2 cut(s) 246, 274
BfmI CTRYAG 1 cut(s) 384
Bme1390I CCNGG 4 cut(s) 197, 337, 378, 379
Bme18I GGWCC 2 cut(s) 184, 374
BmeRI GACNNNNNGTC 1 cut(s) 175
BmeT110I CYCGRG 2 cut(s) 328, 377
BmgT120I GGNCC 3 cut(s) 28, 184, 374
BmiI GGNNCC 3 cut(s) 125, 221, 376
BmrFI CCNGG 4 cut(s) 197, 337, 378, 379
BmrI ACTGGG 2 cut(s) 25, 88
BmuI ACTGGG 2 cut(s) 25, 88
BpiI GAAGAC 3 cut(s) 60, 69, 84
BpuMI CCSGG 3 cut(s) 337, 378, 379
BsaHI GRCGYC 1 cut(s) 344
BsaI GGTCTC 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 377
BsaWI WCCGGW 1 cut(s) 371
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 378
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 2 cut(s) 31, 94
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 377
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 288, 378
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 2 cut(s) 31, 94
Bsh1236I CGCG 3 cut(s) 129, 189, 231
BshFI GGCC 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 335
BsiHKCI CYCGRG 2 cut(s) 328, 377
BsiSI CCGG 4 cut(s) 26, 337, 372, 378
BslFI GGGAC 1 cut(s) 360
BslI CCNNNNNNNGG 2 cut(s) 288, 378
BsmAI GTCTC 2 cut(s) 246, 274
BsmFI GGGAC 1 cut(s) 360
BsnI GGCC 1 cut(s) 29
Bso31I GGTCTC 1 cut(s) 274
BsoBI CYCGRG 2 cut(s) 328, 377
Bsp1286I GDGCHC 3 cut(s) 150, 329, 335
Bsp143I GATC 2 cut(s) 10, 214
BspACI CCGC 4 cut(s) 23, 121, 127, 187
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 256
BspFNI CGCG 3 cut(s) 129, 189, 231
BspLI GGNNCC 3 cut(s) 125, 221, 376
BspMAI CTGCAG 1 cut(s) 388
BspPI GGATC 2 cut(s) 5, 222
BspTNI GGTCTC 1 cut(s) 274
BsrBI CCGCTC 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 2 cut(s) 31, 94
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 377
BssMI GATC 2 cut(s) 10, 214
BssNI GRCGYC 1 cut(s) 344
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 426
BstACI GRCGYC 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 3 cut(s) 129, 189, 231
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 2 cut(s) 13, 217
BstMAI GTCTC 2 cut(s) 246, 274
BstMBI GATC 2 cut(s) 10, 214
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 4 cut(s) 195, 335, 376, 377
BstSFI CTRYAG 1 cut(s) 384
BstUI CGCG 3 cut(s) 129, 189, 231
BstV2I GAAGAC 3 cut(s) 60, 69, 84
BsuRI GGCC 1 cut(s) 29
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 27
CfoI GCGC 1 cut(s) 231
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 3 cut(s) 28, 184, 374
Cfr9I CCCGGG 1 cut(s) 377
CpoI CGGWCCG 1 cut(s) 184
CseI GACGC 1 cut(s) 220
CsiI ACCWGGT 1 cut(s) 195
Csp6I GTAC 1 cut(s) 97
CspI CGGWCCG 1 cut(s) 184
CviAII CATG 2 cut(s) 313, 412
CviJI RGCY 6 cut(s) 29, 148, 254, 320, 327, 333
CviKI_1 RGCY 6 cut(s) 29, 148, 254, 320, 327, 333
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 12, 216
DpnII GATC 2 cut(s) 10, 214
DriI GACNNNNNGTC 1 cut(s) 175
Eam1105I GACNNNNNGTC 1 cut(s) 175
Ecl136II GAGCTC 1 cut(s) 333
Eco24I GRGCYC 3 cut(s) 150, 329, 335
Eco31I GGTCTC 1 cut(s) 274
Eco47I GGWCC 2 cut(s) 184, 374
Eco53kI GAGCTC 1 cut(s) 333
Eco88I CYCGRG 2 cut(s) 328, 377
EcoICRI GAGCTC 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 195
EcoT38I GRGCYC 3 cut(s) 150, 329, 335
FaeI CATG 2 cut(s) 316, 415
FaiI YATR 3 cut(s) 212, 314, 413
FaqI GGGAC 1 cut(s) 360
FatI CATG 2 cut(s) 312, 411
FauI CCCGC 1 cut(s) 30
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 3 cut(s) 150, 329, 335
GlaI GCGC 1 cut(s) 230
HaeIII GGCC 1 cut(s) 29
HapII CCGG 4 cut(s) 26, 337, 372, 378
HgaI GACGC 1 cut(s) 220
HhaI GCGC 1 cut(s) 231
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 2 cut(s) 316, 415
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HinfI GANTC 1 cut(s) 278
HpaII CCGG 4 cut(s) 26, 337, 372, 378
HphI GGTGA 1 cut(s) 31
Hpy188I TCNGA 6 cut(s) 10, 145, 184, 274, 283, 392
Hpy188III TCNNGA 1 cut(s) 14
Hpy99I CGWCG 5 cut(s) 62, 173, 184, 236, 278
HpyCH4III ACNGT 1 cut(s) 426
HpyCH4IV ACGT 1 cut(s) 344
HpyCH4V TGCA 1 cut(s) 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 344
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 2 cut(s) 316, 415
HspAI GCGC 1 cut(s) 229
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Kzo9I GATC 2 cut(s) 10, 214
LmnI GCTCC 1 cut(s) 338
MabI ACCWGGT 1 cut(s) 195
MaeII ACGT 1 cut(s) 344
MaeIII GTNAC 4 cut(s) 37, 247, 308, 415
MalI GATC 2 cut(s) 12, 216
MbiI CCGCTC 1 cut(s) 121
MboI GATC 2 cut(s) 10, 214
MboII GAAGA 5 cut(s) 62, 65, 74, 89, 416
MhlI GDGCHC 3 cut(s) 150, 329, 335
MluCI AATT 3 cut(s) 151, 202, 304
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 5 cut(s) 162, 186, 247, 297, 370
MnlI CCTC 4 cut(s) 16, 292, 310, 333
MroNI GCCGGC 1 cut(s) 25
MspI CCGG 4 cut(s) 26, 337, 372, 378
MspR9I CCNGG 4 cut(s) 197, 337, 378, 379
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 3 cut(s) 129, 189, 231
MwoI GCNNNNNNNGC 1 cut(s) 235
NaeI GCCGGC 1 cut(s) 27
NciI CCSGG 3 cut(s) 337, 378, 379
NdeII GATC 2 cut(s) 10, 214
NgoMIV GCCGGC 1 cut(s) 25
NlaIII CATG 2 cut(s) 316, 415
NlaIV GGNNCC 3 cut(s) 125, 221, 376
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 37, 308
PaeR7I CTCGAG 1 cut(s) 328
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PdiI GCCGGC 1 cut(s) 27
PfoI TCCNGGA 1 cut(s) 335
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 3 cut(s) 125, 221, 376
PspPI GGNCC 3 cut(s) 28, 184, 374
PspXI VCTCGAGB 1 cut(s) 328
PstI CTGCAG 1 cut(s) 388
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
Rsr2I CGGWCCG 1 cut(s) 184
RsrII CGGWCCG 1 cut(s) 184
SacI GAGCTC 1 cut(s) 335
Sau3AI GATC 2 cut(s) 10, 214
Sau96I GGNCC 3 cut(s) 28, 184, 374
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 4 cut(s) 197, 337, 378, 379
SduI GDGCHC 3 cut(s) 150, 329, 335
SetI ASST 4 cut(s) 201, 249, 335, 347
SexAI ACCWGGT 1 cut(s) 195
SfcI CTRYAG 1 cut(s) 384
Sfr274I CTCGAG 1 cut(s) 328
SinI GGWCC 2 cut(s) 184, 374
SlaI CTCGAG 1 cut(s) 328
SmaI CCCGGG 1 cut(s) 379
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
Sse9I AATT 3 cut(s) 151, 202, 304
SsiI CCGC 4 cut(s) 23, 121, 127, 187
SstI GAGCTC 1 cut(s) 335
StyD4I CCNGG 4 cut(s) 195, 335, 376, 377
TaaI ACNGT 1 cut(s) 426
TaiI ACGT 1 cut(s) 347
TaqI TCGA 2 cut(s) 234, 329
TasI AATT 3 cut(s) 151, 202, 304
TseFI GTSAC 2 cut(s) 37, 308
Tsp45I GTSAC 2 cut(s) 37, 308
TspGWI ACGGA 1 cut(s) 250
TspMI CCCGGG 1 cut(s) 377
VpaK11BI GGWCC 2 cut(s) 184, 374
XhoI CTCGAG 1 cut(s) 328
XmaI CCCGGG 1 cut(s) 377
ZraI GACGTC 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.