Rmu_co8492929.1_g000001

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8492929.1
Physical Location & Seq
Forward (+)
121 .. 2325
2205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8492929.1_g000001.1.cds

Sequence Viewer

Length: 1269 bp
atgctgacatttctccctccccaggcagataaaaaggatgtggttggtctgcaggagcaggttttcgttagaaaagtgattgagcttcatgacaagtacctagcatatgtcaatgattgtttccaaaaccatacccttttccacaaggctctcaaggaggcctttgagatcttctgcaacaagggtgttgctggaagctctagtgcagaactacttgctactttctgtgataacattcttaagaaaggtggtagtgagaaattgagtgacgaagccattgaggacacactcgagaaggtagtaaagctgctggcttatattagtgacaaagacctttttgctgaattctacaggaaaaagcttgctcgacgtcttctttttgacaaaagtgctaatgatgaccatgagagatgtatattgacaaaattgaagcaacaatgtggtggtcagttcacctcaaagatggaggggatggttacagatttgacgttagcaaaggagaaccagaccaactttgaggaatacctcaaaaataattcgcaggcaaatcctgggattgatttaacggttactgtgttgactactggcttctggccaagctacaagtcttttgacctcaaccttccagctgagctggttaagtgtgttgaggttttcaaggaattctatcaaacgaagacaaaacatagaaagcttacgtggatgtattcactgggtacttgtaacatcagtgggaaatttgaaccaaaaaccatagagcttatcgtcacgacatatcaggctgcagctctgctactattcaatacctcagatcgattgagttactcggagatcatgactcaattaaatttgactgatgatgatgttgttagactgctccactccttgtcatgtgccaagtacaagatccttaacaaggagccaaacacaaaaaccatctcgcctactgatttctttgaatttaactcgaagtttactgacaaaatgaggaggatcaagattcctcttccacctgtggatgagaagaaaaaggtaatcgaagatgtagacaaggacagacggtatgccattgatgcttctattgtgcgtatcatgaagagccgtaaagttttgggacatcagcagttggtaatggagtgtgtggagcagcttggtcgcatgttcaagccggatttcaaagcaataaaaaagaggattgaagatttaatcacaagagactacttggaaagggataaagagaaccccaatttgtttaggtacttggcctga

Protein Analysis

422

Amino Acids

48.79

Weight (kDa)

8.61

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 373
Acc36I ACCTGC 1 cut(s) 49
AccI GTMKAC 1 cut(s) 1047
AclWI GGATC 2 cut(s) 901, 1001
AcoI YGGCCR 1 cut(s) 593
AcsI RAATTY 5 cut(s) 344, 662, 737, 847, 959
AcyI GRCGYC 1 cut(s) 370
AfaI GTAC 4 cut(s) 98, 718, 902, 1259
AfiI CCNNNNNNNGG 2 cut(s) 22, 916
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 8 cut(s) 430, 658, 743, 802, 959, 1165, 1177, 1199
AjnI CCWGG 2 cut(s) 21, 550
Alw26I GTCTC 1 cut(s) 1209
AlwI GGATC 2 cut(s) 901, 1001
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 3 cut(s) 159, 593, 1263
ApeKI GCWGC 4 cut(s) 307, 782, 785, 1147
ApoI RAATTY 5 cut(s) 344, 662, 737, 847, 959
AsuHPI GGTGA 1 cut(s) 445
AvaI CYCGRG 1 cut(s) 290
BalI TGGCCA 1 cut(s) 595
BbsI GAAGAC 2 cut(s) 365, 683
BbvI GCAGC 4 cut(s) 294, 769, 797, 1159
BccI CCATC 3 cut(s) 457, 466, 944
BceAI ACGGC 1 cut(s) 1086
BcgI CGANNNNNNTGC 2 cut(s) 1136, 1170
BciT130I CCWGG 2 cut(s) 23, 552
BcoDI GTCTC 1 cut(s) 1209
BfaI CTAG 2 cut(s) 101, 201
BfmI CTRYAG 3 cut(s) 50, 349, 783
BfrI CTTAAG 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 49
BglII AGATCT 1 cut(s) 168
BisI GCNGC 4 cut(s) 308, 783, 786, 1148
BlpI GCTNAGC 1 cut(s) 630
BlsI GCNGC 4 cut(s) 309, 784, 787, 1149
Bme1390I CCNGG 2 cut(s) 23, 552
BmeT110I CYCGRG 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 921
BmrFI CCNGG 2 cut(s) 23, 552
BmrI ACTGGG 1 cut(s) 722
BmsI GCATC 1 cut(s) 1063
BmuI ACTGGG 1 cut(s) 722
BpiI GAAGAC 2 cut(s) 365, 683
Bpu1102I GCTNAGC 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 137
Bsa29I ATCGAT 1 cut(s) 814
BsaAI YACGTR 1 cut(s) 699
BsaHI GRCGYC 1 cut(s) 370
BsaJI CCNNGG 2 cut(s) 21, 551
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 916
Bse1I ACTGG 2 cut(s) 589, 717
BseBI CCWGG 2 cut(s) 23, 552
BseCI ATCGAT 1 cut(s) 814
BseDI CCNNGG 2 cut(s) 21, 551
BseGI GGATG 4 cut(s) 43, 477, 708, 1024
BseLI CCNNNNNNNGG 2 cut(s) 22, 916
BseMII CTCAG 2 cut(s) 621, 822
BseNI ACTGG 2 cut(s) 589, 717
BseRI GAGGAG 1 cut(s) 1003
BseXI GCAGC 4 cut(s) 294, 769, 797, 1159
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 3 cut(s) 161, 595, 1265
BshVI ATCGAT 1 cut(s) 814
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 1169
BslFI GGGAC 1 cut(s) 1128
BslI CCNNNNNNNGG 2 cut(s) 22, 916
BsmAI GTCTC 1 cut(s) 1209
BsmFI GGGAC 1 cut(s) 1128
BsnI GGCC 3 cut(s) 161, 595, 1265
BsoBI CYCGRG 1 cut(s) 290
Bsp143I GATC 5 cut(s) 168, 811, 831, 906, 993
Bsp1720I GCTNAGC 1 cut(s) 630
BspANI GGCC 3 cut(s) 161, 595, 1265
BspCNI CTCAG 2 cut(s) 622, 821
BspDI ATCGAT 1 cut(s) 814
BspHI TCATGA 3 cut(s) 88, 834, 1092
BspLI GGNNCC 1 cut(s) 921
BspMAI CTGCAG 2 cut(s) 54, 787
BspMI ACCTGC 1 cut(s) 49
BspPI GGATC 2 cut(s) 901, 1001
BspQI GCTCTTC 1 cut(s) 1091
BspTI CTTAAG 1 cut(s) 239
BsrI ACTGG 2 cut(s) 589, 717
BssECI CCNNGG 2 cut(s) 21, 551
BssMI GATC 5 cut(s) 168, 811, 831, 906, 993
BssNI GRCGYC 1 cut(s) 370
Bst2UI CCWGG 2 cut(s) 23, 552
Bst4CI ACNGT 3 cut(s) 568, 574, 1062
Bst6I CTCTTC 2 cut(s) 1011, 1091
BstACI GRCGYC 1 cut(s) 370
BstAFI CTTAAG 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 699
BstC8I GCNNGC 3 cut(s) 312, 363, 543
BstDEI CTNAG 2 cut(s) 630, 808
BstENI CCTNNNNNAGG 1 cut(s) 914
BstF5I GGATG 4 cut(s) 43, 477, 708, 1024
BstKTI GATC 5 cut(s) 171, 814, 834, 909, 996
BstMAI GTCTC 1 cut(s) 1209
BstMBI GATC 5 cut(s) 168, 811, 831, 906, 993
BstMWI GCNNNNNNNGC 1 cut(s) 1073
BstNI CCWGG 2 cut(s) 23, 552
BstNSI RCATGY 1 cut(s) 1162
BstSCI CCNGG 2 cut(s) 21, 550
BstSFI CTRYAG 3 cut(s) 50, 349, 783
BstV1I GCAGC 4 cut(s) 294, 769, 797, 1159
BstV2I GAAGAC 2 cut(s) 365, 683
BstX2I RGATCY 2 cut(s) 168, 906
BstYI RGATCY 2 cut(s) 168, 906
Bsu15I ATCGAT 1 cut(s) 814
BsuRI GGCC 3 cut(s) 161, 595, 1265
BsuTUI ATCGAT 1 cut(s) 814
BtsCI GGATG 4 cut(s) 43, 477, 708, 1024
BtsIMutI CAGTG 2 cut(s) 710, 736
BveI ACCTGC 1 cut(s) 49
Cac8I GCNNGC 3 cut(s) 312, 363, 543
CciI TCATGA 3 cut(s) 88, 834, 1092
ClaI ATCGAT 1 cut(s) 814
Csp6I GTAC 4 cut(s) 97, 717, 901, 1258
CviAII CATG 6 cut(s) 89, 404, 835, 891, 1093, 1159
CviQI GTAC 4 cut(s) 97, 717, 901, 1258
DdeI CTNAG 2 cut(s) 630, 808
DpnI GATC 5 cut(s) 170, 813, 833, 908, 995
DpnII GATC 5 cut(s) 168, 811, 831, 906, 993
EaeI YGGCCR 1 cut(s) 593
Eam1104I CTCTTC 2 cut(s) 1011, 1091
EarI CTCTTC 2 cut(s) 1011, 1091
Eco147I AGGCCT 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 290
EcoNI CCTNNNNNAGG 1 cut(s) 914
EcoRI GAATTC 2 cut(s) 344, 662
EcoRII CCWGG 2 cut(s) 21, 550
FaeI CATG 6 cut(s) 92, 407, 838, 894, 1096, 1162
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FaqI GGGAC 1 cut(s) 1128
FatI CATG 6 cut(s) 88, 403, 834, 890, 1092, 1158
FauNDI CATATG 1 cut(s) 106
FblI GTMKAC 1 cut(s) 1047
Fnu4HI GCNGC 4 cut(s) 308, 783, 786, 1148
FokI GGATG 4 cut(s) 50, 484, 715, 1031
Fsp4HI GCNGC 4 cut(s) 308, 783, 786, 1148
FspBI CTAG 2 cut(s) 101, 201
GluI GCNGC 4 cut(s) 308, 783, 786, 1148
HaeIII GGCC 3 cut(s) 161, 595, 1265
HapII CCGG 1 cut(s) 1169
Hin1I GRCGYC 1 cut(s) 370
Hin1II CATG 6 cut(s) 92, 407, 838, 894, 1096, 1162
HincII GTYRAC 1 cut(s) 579
HindII GTYRAC 1 cut(s) 579
HindIII AAGCTT 2 cut(s) 359, 692
HinfI GANTC 2 cut(s) 838, 1000
HpaII CCGG 1 cut(s) 1169
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 4 cut(s) 453, 579, 975, 1048
Hpy188I TCNGA 2 cut(s) 811, 829
Hpy188III TCNNGA 6 cut(s) 89, 292, 769, 835, 997, 1093
Hpy8I GTNNAC 4 cut(s) 453, 579, 975, 1048
Hpy99I CGWCG 1 cut(s) 372
HpyAV CCTTC 2 cut(s) 289, 632
HpyCH4III ACNGT 3 cut(s) 568, 574, 1062
HpyCH4IV ACGT 3 cut(s) 370, 488, 698
HpyCH4V TGCA 4 cut(s) 52, 177, 206, 785
HpyF10VI GCNNNNNNNGC 1 cut(s) 1073
HpyF3I CTNAG 2 cut(s) 630, 808
HpySE526I ACGT 3 cut(s) 370, 488, 698
Hsp92I GRCGYC 1 cut(s) 370
Hsp92II CATG 6 cut(s) 92, 407, 838, 894, 1096, 1162
Kzo9I GATC 5 cut(s) 168, 811, 831, 906, 993
LguI GCTCTTC 1 cut(s) 1091
LmnI GCTCC 4 cut(s) 55, 882, 919, 1144
Lsp1109I GCAGC 4 cut(s) 294, 769, 797, 1159
LweI GCATC 1 cut(s) 1063
MaeI CTAG 2 cut(s) 101, 201
MaeII ACGT 3 cut(s) 370, 488, 698
MaeIII GTNAC 7 cut(s) 266, 323, 475, 568, 722, 766, 821
MalI GATC 5 cut(s) 170, 813, 833, 908, 995
MboI GATC 5 cut(s) 168, 811, 831, 906, 993
MboII GAAGA 8 cut(s) 163, 365, 688, 998, 1036, 1052, 1108, 1211
MflI RGATCY 2 cut(s) 168, 906
MlsI TGGCCA 1 cut(s) 595
MluNI TGGCCA 1 cut(s) 595
MlyI GAGTC 1 cut(s) 832
Mox20I TGGCCA 1 cut(s) 595
MscI TGGCCA 1 cut(s) 595
MseI TTAA 7 cut(s) 240, 563, 639, 845, 912, 963, 1205
Msp20I TGGCCA 1 cut(s) 595
MspA1I CMGCKG 1 cut(s) 629
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 1 cut(s) 1169
MspR9I CCNGG 2 cut(s) 23, 552
MvaI CCWGG 2 cut(s) 23, 552
MwoI GCNNNNNNNGC 1 cut(s) 1073
NdeI CATATG 1 cut(s) 106
NdeII GATC 5 cut(s) 168, 811, 831, 906, 993
NlaIII CATG 6 cut(s) 92, 407, 838, 894, 1096, 1162
NlaIV GGNNCC 1 cut(s) 921
NmuCI GTSAC 3 cut(s) 266, 323, 766
NspI RCATGY 1 cut(s) 1162
PaeR7I CTCGAG 1 cut(s) 290
PagI TCATGA 3 cut(s) 88, 834, 1092
PceI AGGCCT 1 cut(s) 161
PciSI GCTCTTC 1 cut(s) 1091
PfeI GAWTC 1 cut(s) 1000
PkrI GCNGC 4 cut(s) 309, 784, 787, 1149
PleI GAGTC 1 cut(s) 832
PpsI GAGTC 1 cut(s) 832
Ppu21I YACGTR 1 cut(s) 699
Psp6I CCWGG 2 cut(s) 21, 550
PspGI CCWGG 2 cut(s) 21, 550
PspN4I GGNNCC 1 cut(s) 921
PstI CTGCAG 2 cut(s) 54, 787
PsuI RGATCY 2 cut(s) 168, 906
PvuII CAGCTG 1 cut(s) 629
RsaI GTAC 4 cut(s) 98, 718, 902, 1259
RsaNI GTAC 4 cut(s) 97, 717, 901, 1258
SapI GCTCTTC 1 cut(s) 1091
SaqAI TTAA 7 cut(s) 240, 563, 639, 845, 912, 963, 1205
SatI GCNGC 4 cut(s) 308, 783, 786, 1148
Sau3AI GATC 5 cut(s) 168, 811, 831, 906, 993
SchI GAGTC 1 cut(s) 832
ScrFI CCNGG 2 cut(s) 23, 552
SfaNI GCATC 1 cut(s) 1063
SfcI CTRYAG 3 cut(s) 50, 349, 783
Sfr274I CTCGAG 1 cut(s) 290
SlaI CTCGAG 1 cut(s) 290
SmlI CTYRAG 3 cut(s) 152, 239, 290
SmoI CTYRAG 3 cut(s) 152, 239, 290
SseBI AGGCCT 1 cut(s) 161
SspMI CTAG 2 cut(s) 101, 201
StuI AGGCCT 1 cut(s) 161
StyD4I CCNGG 2 cut(s) 21, 550
TaaI ACNGT 3 cut(s) 568, 574, 1062
TaiI ACGT 3 cut(s) 373, 491, 701
TaqI TCGA 5 cut(s) 291, 367, 814, 968, 1038
TatI WGTACW 1 cut(s) 900
TfiI GAWTC 1 cut(s) 1000
Tru1I TTAA 7 cut(s) 240, 563, 639, 845, 912, 963, 1205
Tru9I TTAA 7 cut(s) 240, 563, 639, 845, 912, 963, 1205
TscAI CASTG 2 cut(s) 717, 736
TseFI GTSAC 3 cut(s) 266, 323, 766
TseI GCWGC 4 cut(s) 307, 782, 785, 1147
Tsp45I GTSAC 3 cut(s) 266, 323, 766
TspDTI ATGAA 2 cut(s) 77, 1109
TspRI CASTG 2 cut(s) 717, 736
Vha464I CTTAAG 1 cut(s) 239
XagI CCTNNNNNAGG 1 cut(s) 914
XapI RAATTY 5 cut(s) 344, 662, 737, 847, 959
XceI RCATGY 1 cut(s) 1162
XhoI CTCGAG 1 cut(s) 290
XmiI GTMKAC 1 cut(s) 1047
XspI CTAG 2 cut(s) 101, 201
ZraI GACGTC 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.