Rorug05G0180100

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
17225512 .. 17225999
488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0180100.1

Sequence Viewer

Length: 300 bp
ATGACTGAGAACTTTCTTTTTGACTTTGTACACAGTGGTTACATGTCACCGGAGTATGCTATGGGAGGAATTTTTTCCATAAAATCCGATGTGTATAGTTTTGGAGTACTAATGCTTGAGATCATAAGTGGTCGGAGAAACACGAGCTTCTACGATGATGATCGTGTGGTCAATACAGTGGGATATGCATGGGAGTTATGGAAAGACGGTGCAGGTACTCTGGATCTGCCACTGCCCATGAGATTTGAAACTGCTTTTGAGATCAAAAGCGCTTCTAGAAATGTTTCGGCTGTTTGGTAA

Protein Analysis

99

Amino Acids

11.27

Weight (kDa)

4.61

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 13 - 59 3.9e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 203
AclWI GGATC 1 cut(s) 231
AcsI RAATTY 1 cut(s) 69
AfaI GTAC 3 cut(s) 30, 108, 217
AfeI AGCGCT 1 cut(s) 271
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 1 cut(s) 248
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
AlwI GGATC 1 cut(s) 231
Aor51HI AGCGCT 1 cut(s) 271
ApoI RAATTY 1 cut(s) 69
Asp700I GAANNNNTTC 2 cut(s) 73, 283
AspLEI GCGC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 39
BauI CACGAG 1 cut(s) 142
BfaI CTAG 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 203
BmcAI AGTACT 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 137
BsaBI GATNNNNATC 1 cut(s) 159
BsaWI WCCGGW 1 cut(s) 49
Bse8I GATNNNNATC 1 cut(s) 159
BseJI GATNNNNATC 1 cut(s) 159
BsgI GTGCAG 1 cut(s) 231
BsiSI CCGG 1 cut(s) 50
Bsp1407I TGTACA 1 cut(s) 28
Bsp143I GATC 4 cut(s) 120, 160, 223, 261
BspMI ACCTGC 1 cut(s) 203
BspPI GGATC 1 cut(s) 231
BsrGI TGTACA 1 cut(s) 28
BssMI GATC 4 cut(s) 120, 160, 223, 261
BssSI CACGAG 1 cut(s) 142
Bst2BI CACGAG 1 cut(s) 142
Bst4CI ACNGT 3 cut(s) 35, 178, 209
BstAUI TGTACA 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 6
BstH2I RGCGCY 1 cut(s) 273
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 4 cut(s) 123, 163, 226, 264
BstMBI GATC 4 cut(s) 120, 160, 223, 261
BstNSI RCATGY 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BtsI GCAGTG 1 cut(s) 230
BtsIMutI CAGTG 3 cut(s) 40, 183, 230
BveI ACCTGC 1 cut(s) 203
CfoI GCGC 1 cut(s) 272
Csp6I GTAC 3 cut(s) 29, 107, 216
CviAII CATG 3 cut(s) 43, 189, 238
CviJI RGCY 2 cut(s) 147, 290
CviKI_1 RGCY 2 cut(s) 147, 290
CviQI GTAC 3 cut(s) 29, 107, 216
DdeI CTNAG 1 cut(s) 6
DpnI GATC 4 cut(s) 122, 162, 225, 263
DpnII GATC 4 cut(s) 120, 160, 223, 261
Eco47III AGCGCT 1 cut(s) 271
EcoT22I ATGCAT 1 cut(s) 190
FaeI CATG 3 cut(s) 46, 192, 241
FatI CATG 3 cut(s) 42, 188, 237
FspBI CTAG 1 cut(s) 276
GlaI GCGC 1 cut(s) 271
HaeII RGCGCY 1 cut(s) 273
HapII CCGG 1 cut(s) 50
HhaI GCGC 1 cut(s) 272
Hin1II CATG 3 cut(s) 46, 192, 241
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HpaII CCGG 1 cut(s) 50
HphI GGTGA 1 cut(s) 39
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 88, 135
Hpy188III TCNNGA 2 cut(s) 221, 276
Hpy8I GTNNAC 1 cut(s) 31
HpyCH4III ACNGT 3 cut(s) 35, 178, 209
HpyCH4V TGCA 2 cut(s) 188, 212
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 3 cut(s) 46, 192, 241
HspAI GCGC 1 cut(s) 270
Kzo9I GATC 4 cut(s) 120, 160, 223, 261
LpnPI CCDG 3 cut(s) 63, 198, 206
MaeI CTAG 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 38, 45
MalI GATC 4 cut(s) 122, 162, 225, 263
MboI GATC 4 cut(s) 120, 160, 223, 261
MflI RGATCY 1 cut(s) 223
MluCI AATT 1 cut(s) 69
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 1 cut(s) 59
Mph1103I ATGCAT 1 cut(s) 190
MroXI GAANNNNTTC 2 cut(s) 73, 283
MspI CCGG 1 cut(s) 50
NdeII GATC 4 cut(s) 120, 160, 223, 261
NlaIII CATG 3 cut(s) 46, 192, 241
NmuCI GTSAC 1 cut(s) 45
NsiI ATGCAT 1 cut(s) 190
NspI RCATGY 1 cut(s) 46
PciI ACATGT 1 cut(s) 42
PdmI GAANNNNTTC 2 cut(s) 73, 283
PscI ACATGT 1 cut(s) 42
PsuI RGATCY 1 cut(s) 223
RsaI GTAC 3 cut(s) 30, 108, 217
RsaNI GTAC 3 cut(s) 29, 107, 216
Sau3AI GATC 4 cut(s) 120, 160, 223, 261
ScaI AGTACT 1 cut(s) 108
SetI ASST 2 cut(s) 149, 217
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 1 cut(s) 69
SspMI CTAG 1 cut(s) 276
TaaI ACNGT 3 cut(s) 35, 178, 209
TasI AATT 1 cut(s) 69
TatI WGTACW 2 cut(s) 28, 106
TscAI CASTG 3 cut(s) 40, 183, 237
TseFI GTSAC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 45
TspRI CASTG 3 cut(s) 40, 183, 237
XapI RAATTY 1 cut(s) 69
XbaI TCTAGA 1 cut(s) 275
XceI RCATGY 1 cut(s) 46
XmnI GAANNNNTTC 2 cut(s) 73, 283
XspI CTAG 1 cut(s) 276
ZrmI AGTACT 1 cut(s) 108
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.